Wall clock time and date at job start Wed Apr 1 2020 00:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 110.88735 * 2 1 4 4 C 1.54910 * 111.00255 * 236.12163 * 2 1 3 5 5 N 1.47433 * 104.82934 * 204.91397 * 4 2 1 6 6 C 1.34777 * 125.64688 * 204.08751 * 5 4 2 7 7 O 1.21503 * 120.00212 * 180.29855 * 6 5 4 8 8 O 1.34644 * 119.99831 * 0.02854 * 6 5 4 9 9 C 1.45196 * 116.99750 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47572 * 59.99709 * 9 8 6 11 11 C 1.52998 * 109.47070 * 180.02562 * 9 8 6 12 12 C 1.53006 * 109.47014 * 299.99726 * 9 8 6 13 13 C 1.47021 * 108.70381 * 24.35790 * 5 4 2 14 14 C 1.54330 * 107.26554 * 358.58238 * 13 5 4 15 15 H 1.08999 * 110.66768 * 96.52872 * 14 13 5 16 16 C 1.53003 * 110.85207 * 219.67711 * 14 13 5 17 17 C 1.50704 * 109.46932 * 288.69636 * 16 14 13 18 18 O 1.21277 * 119.99857 * 359.97438 * 17 16 14 19 19 N 1.34768 * 120.00145 * 180.02562 * 17 16 14 20 20 C 1.46504 * 120.00108 * 359.97438 * 19 17 16 21 21 C 1.46502 * 120.00460 * 179.97438 * 19 17 16 22 22 C 1.50696 * 109.47190 * 89.99365 * 21 19 17 23 23 H 1.08001 * 120.00171 * 0.02562 * 22 21 19 24 24 C 1.37876 * 120.00034 * 180.02562 * 22 21 19 25 25 N 1.31515 * 120.00204 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99959 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47233 * 89.99563 * 26 24 22 28 28 H 1.48498 * 109.47412 * 209.99709 * 26 24 22 29 29 H 1.48499 * 109.47450 * 329.99948 * 26 24 22 30 30 H 1.09000 * 109.47274 * 182.43053 * 1 2 3 31 31 H 1.09008 * 109.47367 * 302.42061 * 1 2 3 32 32 H 1.08994 * 109.47692 * 62.42863 * 1 2 3 33 33 H 1.08994 * 110.36974 * 86.07509 * 4 2 1 34 34 H 1.09001 * 110.36501 * 323.74843 * 4 2 1 35 35 H 1.09007 * 109.47040 * 60.00098 * 10 9 8 36 36 H 1.08994 * 109.47761 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47416 * 300.00744 * 10 9 8 38 38 H 1.08998 * 109.47592 * 59.99703 * 11 9 8 39 39 H 1.09003 * 109.46949 * 179.97438 * 11 9 8 40 40 H 1.08999 * 109.47084 * 299.99805 * 11 9 8 41 41 H 1.08996 * 109.47190 * 60.00473 * 12 9 8 42 42 H 1.09003 * 109.47272 * 180.02562 * 12 9 8 43 43 H 1.08996 * 109.47211 * 300.00408 * 12 9 8 44 44 H 1.08994 * 109.88347 * 118.12856 * 13 5 4 45 45 H 1.09001 * 109.87706 * 239.29324 * 13 5 4 46 46 H 1.09001 * 109.47167 * 48.68841 * 16 14 13 47 47 H 1.09000 * 109.47364 * 168.69347 * 16 14 13 48 48 H 1.09003 * 109.47197 * 89.99647 * 20 19 17 49 49 H 1.08999 * 109.47694 * 210.00261 * 20 19 17 50 50 H 1.09000 * 109.47158 * 330.00273 * 20 19 17 51 51 H 1.09001 * 109.47417 * 210.00199 * 21 19 17 52 52 H 1.09005 * 109.46411 * 329.99680 * 21 19 17 53 53 H 0.97001 * 119.99839 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0851 -0.8061 -1.2007 5 7 3.4271 -1.2427 -0.7738 6 6 4.4476 -1.5610 -1.5947 7 8 5.5131 -1.9149 -1.1303 8 8 4.2846 -1.4920 -2.9294 9 6 5.4265 -1.8487 -3.7522 10 6 5.8325 -3.2949 -3.4619 11 6 5.0537 -1.7098 -5.2296 12 6 6.5967 -0.9164 -3.4322 13 6 3.4657 -1.2797 0.6954 14 6 2.0862 -0.8084 1.2019 15 1 1.4452 -1.6619 1.4224 16 6 2.2350 0.0867 2.4338 17 6 2.6588 -0.7493 3.6139 18 8 2.8249 -1.9434 3.4827 19 7 2.8521 -0.1701 4.8153 20 6 2.6509 1.2724 4.9741 21 6 3.2636 -0.9828 5.9627 22 6 4.7682 -1.0352 6.0275 23 1 5.3590 -0.5148 5.2881 24 6 5.3907 -1.7475 7.0305 25 7 6.7038 -1.7928 7.0873 26 14 4.3689 -2.6482 8.3088 27 1 4.0936 -4.0297 7.8387 28 1 5.1154 -2.7013 9.5915 29 1 3.0854 -1.9297 8.5125 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3634 0.5510 0.8675 32 1 -0.3634 0.4756 -0.9109 33 1 2.1558 -0.1712 -2.0838 34 1 1.4518 -1.6699 -1.4030 35 1 4.9988 -3.9591 -3.6899 36 1 6.6894 -3.5628 -4.0799 37 1 6.0981 -3.3935 -2.4093 38 1 4.7648 -0.6793 -5.4362 39 1 5.9112 -1.9772 -5.8473 40 1 4.2199 -2.3736 -5.4579 41 1 6.8624 -1.0149 -2.3798 42 1 7.4539 -1.1838 -4.0503 43 1 6.3075 0.1140 -3.6391 44 1 3.6601 -2.2967 1.0357 45 1 4.2424 -0.6089 1.0627 46 1 2.9889 0.8497 2.2397 47 1 1.2807 0.5661 2.6521 48 1 1.6146 1.4664 5.2511 49 1 3.3121 1.6478 5.7550 50 1 2.8761 1.7763 4.0341 51 1 2.8756 -0.5395 6.8798 52 1 2.8692 -1.9930 5.8524 53 1 7.1417 -2.2943 7.7928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930592742.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:37 Heat of formation + Delta-G solvation = -142.884490 kcal Electronic energy + Delta-G solvation = -31148.241590 eV Core-core repulsion = 27019.083395 eV Total energy + Delta-G solvation = -4129.158195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.98916 -40.96086 -39.68040 -37.79127 -36.59748 -35.31050 -34.73105 -34.10584 -32.50845 -30.57787 -28.41338 -28.34196 -28.27963 -27.36100 -27.17770 -24.87814 -23.49636 -22.35436 -21.11421 -20.50222 -19.86470 -19.15795 -18.95165 -17.91977 -17.68698 -17.47180 -17.10630 -16.76364 -16.25478 -15.94044 -15.86381 -15.41954 -15.05145 -14.75227 -14.74224 -14.43229 -14.27845 -13.96822 -13.83935 -13.68244 -13.59985 -13.39545 -13.30923 -13.18457 -13.13099 -12.93779 -12.90124 -12.89377 -12.70238 -12.60740 -12.48188 -12.38871 -12.28034 -12.02762 -11.82102 -11.75825 -11.70374 -11.52079 -11.43630 -11.15799 -10.84933 -10.58011 -9.86669 -9.35180 -8.35454 -6.40776 0.98006 1.30433 1.35399 1.43704 1.66726 1.86110 2.29538 2.38443 2.86027 2.99162 3.37815 3.49984 3.68701 3.72922 3.76622 3.87104 3.91792 4.15401 4.32061 4.34782 4.43538 4.50171 4.52112 4.57186 4.59314 4.65339 4.66858 4.69985 4.72318 4.74445 4.80212 4.81634 4.86159 4.88287 4.91940 4.98071 5.01790 5.05929 5.11091 5.15813 5.21192 5.24559 5.32148 5.37041 5.41369 5.45779 5.55793 5.64103 6.22983 6.36780 6.61212 6.75342 7.19151 7.20726 7.47642 8.81952 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012572 B = 0.002778 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.637303 B =10076.756698 C =11622.858781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.105 0.895 4 C 0.104 3.896 5 N -0.606 5.606 6 C 0.657 3.343 7 O -0.602 6.602 8 O -0.358 6.358 9 C 0.123 3.877 10 C -0.182 4.182 11 C -0.130 4.130 12 C -0.181 4.181 13 C 0.138 3.862 14 C -0.069 4.069 15 H 0.087 0.913 16 C -0.114 4.114 17 C 0.490 3.510 18 O -0.594 6.594 19 N -0.611 5.611 20 C 0.076 3.924 21 C 0.223 3.777 22 C -0.536 4.536 23 H 0.024 0.976 24 C 0.006 3.994 25 N -0.949 5.949 26 Si 0.951 3.049 27 H -0.278 1.278 28 H -0.275 1.275 29 H -0.234 1.234 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.047 0.953 46 H 0.108 0.892 47 H 0.142 0.858 48 H 0.085 0.915 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.051 0.949 52 H 0.018 0.982 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.466 8.637 -23.778 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.123 0.877 4 C -0.017 4.017 5 N -0.346 5.346 6 C 0.413 3.587 7 O -0.494 6.494 8 O -0.273 6.273 9 C 0.086 3.914 10 C -0.239 4.239 11 C -0.187 4.187 12 C -0.238 4.238 13 C 0.016 3.984 14 C -0.089 4.089 15 H 0.106 0.894 16 C -0.154 4.154 17 C 0.280 3.720 18 O -0.475 6.475 19 N -0.342 5.342 20 C -0.066 4.066 21 C 0.100 3.900 22 C -0.574 4.574 23 H 0.042 0.958 24 C -0.191 4.191 25 N -0.589 5.589 26 Si 0.774 3.226 27 H -0.204 1.204 28 H -0.200 1.200 29 H -0.157 1.157 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.160 0.840 48 H 0.103 0.897 49 H 0.079 0.921 50 H 0.110 0.890 51 H 0.069 0.931 52 H 0.036 0.964 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.815 7.849 -23.729 29.054 hybrid contribution 1.103 -1.041 1.168 1.914 sum -13.713 6.808 -22.561 27.265 Atomic orbital electron populations 1.21711 0.91030 1.02800 1.03836 1.22458 0.98050 0.99193 0.90639 0.87657 1.22709 0.80710 0.99296 0.99011 1.47311 1.12574 1.68825 1.05933 1.17760 0.82630 0.76980 0.81364 1.90930 1.27325 1.53701 1.77397 1.86294 1.43919 1.82212 1.14851 1.22475 0.83247 0.94852 0.90776 1.22490 1.03015 0.95148 1.03283 1.21859 1.03932 1.03962 0.88966 1.22478 0.98504 0.99563 1.03236 1.21851 0.99330 1.00423 0.76797 1.22025 0.93666 0.98908 0.94272 0.89421 1.21765 1.05798 0.97890 0.89942 1.21544 0.76944 0.88524 0.85028 1.90652 1.53875 1.18346 1.84635 1.48001 1.66225 1.10245 1.09735 1.21998 1.02491 0.78303 1.03818 1.19300 0.92991 0.91790 0.85872 1.21599 0.92024 1.31923 1.11890 0.95788 1.25933 0.96103 0.96748 1.00356 1.70072 1.10353 1.43403 1.35067 0.85666 0.79958 0.79157 0.77841 1.20388 1.20008 1.15660 0.92580 0.90516 0.90230 0.88402 0.90373 0.91785 0.88804 0.93106 0.90692 0.87870 0.90953 0.93079 0.88875 0.91436 0.94466 0.93478 0.87414 0.84017 0.89704 0.92131 0.88992 0.93131 0.96409 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.29 71.98 0.67 -0.58 16 2 C -0.08 -1.23 3.09 -9.40 -0.03 -1.26 16 3 H 0.11 1.26 8.05 -2.38 -0.02 1.24 16 4 C 0.10 1.90 6.39 86.85 0.56 2.46 16 5 N -0.61 -17.55 3.33 -942.08 -3.13 -20.68 16 6 C 0.66 21.59 7.93 129.79 1.03 22.62 16 7 O -0.60 -24.50 12.21 19.83 0.24 -24.26 16 8 O -0.36 -9.40 9.42 -55.54 -0.52 -9.92 16 9 C 0.12 2.63 1.13 -10.79 -0.01 2.61 16 10 C -0.18 -4.16 8.37 71.98 0.60 -3.56 16 11 C -0.13 -1.64 8.85 71.98 0.64 -1.00 16 12 C -0.18 -3.99 8.37 71.98 0.60 -3.38 16 13 C 0.14 4.59 5.71 86.73 0.50 5.09 16 14 C -0.07 -1.66 1.97 -9.60 -0.02 -1.67 16 15 H 0.09 2.31 7.75 -2.39 -0.02 2.29 16 16 C -0.11 -2.69 3.66 29.85 0.11 -2.58 16 17 C 0.49 18.89 7.50 87.66 0.66 19.55 16 18 O -0.59 -29.26 14.73 -3.02 -0.04 -29.30 16 19 N -0.61 -24.13 2.86 -851.12 -2.43 -26.56 16 20 C 0.08 2.01 10.24 127.77 1.31 3.32 16 21 C 0.22 10.96 4.23 85.63 0.36 11.32 16 22 C -0.54 -32.43 9.94 25.60 0.25 -32.17 16 23 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 24 C 0.01 0.37 5.47 84.65 0.46 0.84 16 25 N -0.95 -62.10 13.96 21.45 0.30 -61.80 16 26 Si 0.95 45.57 27.47 68.60 1.88 47.45 16 27 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 28 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 29 H -0.23 -9.88 6.54 99.48 0.65 -9.23 16 30 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 31 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.10 1.46 8.04 -2.39 -0.02 1.44 16 34 H 0.08 1.33 8.04 -2.39 -0.02 1.31 16 35 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.59 5.87 -2.38 -0.01 1.57 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 1.55 5.89 -2.39 -0.01 1.54 16 42 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.04 1.55 7.90 -2.39 -0.02 1.53 16 45 H 0.05 1.75 7.69 -2.39 -0.02 1.73 16 46 H 0.11 2.27 7.20 -2.39 -0.02 2.25 16 47 H 0.14 2.05 8.11 -2.39 -0.02 2.03 16 48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.06 1.79 8.07 -2.39 -0.02 1.78 16 50 H 0.09 1.84 6.44 -2.39 -0.02 1.83 16 51 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 52 H 0.02 0.94 6.85 -2.38 -0.02 0.92 16 53 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -89.92 415.79 4.79 -85.13 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.81 Total: 18.36 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 7.69 Total: 21.58 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -5.27 Total: -109.04 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -0.33 Total: -63.48 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -89.92 4.79 -85.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930592742.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.756 kcal (2) G-P(sol) polarization free energy of solvation -89.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds