Wall clock time and date at job start Tue Mar 31 2020 23:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.58446 * 2 1 4 4 C 1.53194 * 109.58753 * 239.56891 * 2 1 3 5 5 C 1.53041 * 109.31118 * 185.58217 * 4 2 1 6 6 H 1.09001 * 109.45535 * 301.34168 * 5 4 2 7 7 C 1.50699 * 109.45548 * 181.37545 * 5 4 2 8 8 O 1.21283 * 120.00347 * 359.97438 * 7 5 4 9 9 N 1.34780 * 119.99775 * 180.02562 * 7 5 4 10 10 C 1.46501 * 119.99938 * 359.97438 * 9 7 5 11 11 C 1.46504 * 119.99951 * 179.97438 * 9 7 5 12 12 C 1.50708 * 109.46910 * 89.99739 * 11 9 7 13 13 H 1.07997 * 120.00085 * 359.97438 * 12 11 9 14 14 C 1.37871 * 119.99655 * 179.97438 * 12 11 9 15 15 N 1.31510 * 120.00466 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99895 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46810 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47134 * 120.00089 * 16 14 12 19 19 H 1.48493 * 109.47240 * 240.00321 * 16 14 12 20 20 C 1.53034 * 109.54006 * 61.36732 * 5 4 2 21 21 C 1.53632 * 109.24184 * 298.50952 * 20 5 4 22 22 N 1.46923 * 109.58352 * 120.28275 * 2 1 3 23 23 C 1.34785 * 120.63367 * 353.36909 * 22 2 1 24 24 O 1.21508 * 119.99520 * 354.31887 * 23 22 2 25 25 O 1.34635 * 119.99861 * 174.31601 * 23 22 2 26 26 C 1.45208 * 116.99518 * 180.02562 * 25 23 22 27 27 C 1.52996 * 109.47152 * 60.00014 * 26 25 23 28 28 C 1.52996 * 109.46850 * 299.99917 * 26 25 23 29 29 C 1.53002 * 109.46965 * 180.02562 * 26 25 23 30 30 H 1.08997 * 109.47325 * 307.16114 * 1 2 3 31 31 H 1.08999 * 109.46909 * 67.15574 * 1 2 3 32 32 H 1.08998 * 109.47509 * 187.15528 * 1 2 3 33 33 H 1.09002 * 109.49749 * 305.53526 * 4 2 1 34 34 H 1.08999 * 109.49387 * 65.59299 * 4 2 1 35 35 H 1.09001 * 109.46776 * 90.00608 * 10 9 7 36 36 H 1.09000 * 109.47323 * 210.00276 * 10 9 7 37 37 H 1.08990 * 109.47367 * 330.00914 * 10 9 7 38 38 H 1.09002 * 109.46975 * 209.99194 * 11 9 7 39 39 H 1.08995 * 109.47399 * 330.00112 * 11 9 7 40 40 H 0.96995 * 120.00638 * 179.97438 * 15 14 12 41 41 H 1.08994 * 109.49982 * 58.58115 * 20 5 4 42 42 H 1.08998 * 109.49969 * 178.65256 * 20 5 4 43 43 H 1.09000 * 109.73460 * 295.12484 * 21 20 5 44 44 H 1.08998 * 109.66338 * 174.55087 * 21 20 5 45 45 H 1.08998 * 109.47395 * 300.00105 * 27 26 25 46 46 H 1.09000 * 109.47140 * 59.99964 * 27 26 25 47 47 H 1.08998 * 109.47065 * 179.97438 * 27 26 25 48 48 H 1.09006 * 109.47049 * 180.02562 * 28 26 25 49 49 H 1.09003 * 109.47673 * 300.00080 * 28 26 25 50 50 H 1.09008 * 109.47484 * 60.00467 * 28 26 25 51 51 H 1.09000 * 109.46930 * 299.99793 * 29 26 25 52 52 H 1.09003 * 109.47183 * 59.99600 * 29 26 25 53 53 H 1.08998 * 109.47165 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8496 -1.1689 6 1 4.0061 0.1459 -1.0994 7 6 4.0794 -1.5384 -2.4077 8 8 3.3022 -1.8992 -3.2660 9 7 5.4009 -1.7543 -2.5613 10 6 6.3397 -1.3188 -1.5243 11 6 5.8986 -2.4243 -3.7654 12 6 6.1996 -1.3955 -4.8247 13 1 6.0361 -0.3475 -4.6216 14 6 6.6836 -1.7924 -6.0532 15 7 6.8822 -3.0686 -6.3007 16 14 7.0561 -0.5173 -7.3666 17 1 6.7489 0.8377 -6.8422 18 1 8.4927 -0.5911 -7.7348 19 1 6.2231 -0.7847 -8.5665 20 6 3.9569 -1.6657 0.0657 21 6 3.4656 -0.9404 1.3277 22 7 2.0225 -0.6980 1.1954 23 6 1.1673 -1.1034 2.1551 24 8 -0.0081 -0.8030 2.0877 25 8 1.6156 -1.8411 3.1883 26 6 0.6383 -2.2428 4.1844 27 6 -0.4510 -3.0862 3.5190 28 6 0.0078 -0.9977 4.8112 29 6 1.3288 -3.0672 5.2728 30 1 -0.3634 0.6207 0.8190 31 1 -0.3633 0.3990 -0.9471 32 1 -0.3634 -1.0196 0.1280 33 1 1.6029 -1.7270 -1.2891 34 1 1.7655 -0.1699 -2.1366 35 1 6.4782 -2.1212 -0.7996 36 1 7.2980 -1.0730 -1.9818 37 1 5.9413 -0.4386 -1.0200 38 1 6.8080 -2.9751 -3.5250 39 1 5.1418 -3.1160 -4.1353 40 1 7.2224 -3.3479 -7.1651 41 1 3.4982 -2.6529 0.0088 42 1 5.0411 -1.7701 0.1058 43 1 3.9877 0.0107 1.4324 44 1 3.6531 -1.5610 2.2039 45 1 -0.9428 -2.4986 2.7438 46 1 -0.0018 -3.9732 3.0724 47 1 -1.1843 -3.3881 4.2668 48 1 -0.7255 -1.2992 5.5593 49 1 0.7839 -0.3968 5.2853 50 1 -0.4841 -0.4100 4.0360 51 1 1.7783 -3.9542 4.8265 52 1 2.1047 -2.4659 5.7467 53 1 0.5952 -3.3691 6.0203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930593149.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:58 Heat of formation + Delta-G solvation = -126.013253 kcal Electronic energy + Delta-G solvation = -31760.492765 eV Core-core repulsion = 27632.066162 eV Total energy + Delta-G solvation = -4128.426603 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.14194 -41.06130 -39.38055 -37.47665 -36.66407 -35.25595 -34.87544 -33.75602 -33.31598 -29.84980 -28.74155 -28.31068 -28.23590 -27.33834 -26.44114 -24.72113 -24.00869 -22.87376 -21.54067 -20.30435 -19.90117 -18.70097 -18.53510 -17.79924 -17.61467 -17.21019 -17.13355 -16.44331 -16.33230 -15.97514 -15.57791 -15.44729 -15.06709 -14.87581 -14.64702 -14.54529 -14.43549 -14.06377 -13.59544 -13.55395 -13.45151 -13.43217 -13.20483 -13.16998 -13.04348 -12.95155 -12.80446 -12.74115 -12.70933 -12.63298 -12.40693 -12.33855 -12.21969 -12.05602 -11.99811 -11.77960 -11.66624 -11.54200 -11.27302 -10.65600 -10.58298 -10.28855 -9.65896 -9.39494 -8.22705 -6.37607 1.17481 1.36061 1.38630 1.50282 1.82065 1.86429 2.31406 2.46219 2.85525 3.06858 3.53478 3.66985 3.75328 3.81684 3.86303 3.95253 4.00978 4.11034 4.21572 4.32217 4.41506 4.52054 4.56377 4.60921 4.65676 4.67229 4.71065 4.74021 4.81610 4.82330 4.86770 4.87710 4.91705 4.93243 5.01310 5.03432 5.09704 5.15173 5.19399 5.24304 5.30436 5.33299 5.34392 5.39948 5.55503 5.56810 5.63394 5.85148 6.06061 6.43064 6.70495 6.81157 7.28503 7.37030 7.50200 8.84487 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024322 B = 0.002403 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.932669 B =11648.796975 C =12103.646422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.167 3.833 3 H 0.104 0.896 4 C -0.103 4.103 5 C -0.093 4.093 6 H 0.126 0.874 7 C 0.498 3.502 8 O -0.602 6.602 9 N -0.608 5.608 10 C 0.073 3.927 11 C 0.258 3.742 12 C -0.539 4.539 13 H 0.055 0.945 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.968 3.032 17 H -0.265 1.265 18 H -0.269 1.269 19 H -0.284 1.284 20 C -0.130 4.130 21 C 0.119 3.881 22 N -0.595 5.595 23 C 0.647 3.353 24 O -0.579 6.579 25 O -0.369 6.369 26 C 0.126 3.874 27 C -0.180 4.180 28 C -0.176 4.176 29 C -0.136 4.136 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.024 0.976 39 H -0.007 1.007 40 H 0.267 0.733 41 H 0.049 0.951 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.072 0.928 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 6.048 27.314 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.066 3.934 3 H 0.122 0.878 4 C -0.142 4.142 5 C -0.114 4.114 6 H 0.143 0.857 7 C 0.287 3.713 8 O -0.483 6.483 9 N -0.338 5.338 10 C -0.068 4.068 11 C 0.136 3.864 12 C -0.578 4.578 13 H 0.073 0.927 14 C -0.194 4.194 15 N -0.570 5.570 16 Si 0.793 3.207 17 H -0.189 1.189 18 H -0.194 1.194 19 H -0.210 1.210 20 C -0.168 4.168 21 C -0.002 4.002 22 N -0.336 5.336 23 C 0.402 3.598 24 O -0.470 6.470 25 O -0.284 6.284 26 C 0.090 3.910 27 C -0.237 4.237 28 C -0.233 4.233 29 C -0.193 4.193 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.042 0.958 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.105 0.895 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.091 0.909 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.632 5.779 26.813 28.755 hybrid contribution 0.078 -0.139 -1.583 1.591 sum -8.554 5.641 25.230 27.231 Atomic orbital electron populations 1.22083 0.92756 1.02541 1.01273 1.21284 0.95630 0.95480 0.81011 0.87838 1.21743 0.93661 1.00954 0.97859 1.21299 0.96873 1.01360 0.91852 0.85653 1.21371 0.81976 0.79381 0.88569 1.90635 1.57010 1.54139 1.46529 1.48155 1.06638 1.57823 1.21227 1.22148 0.93531 1.00965 0.90186 1.18749 0.92931 0.92206 0.82500 1.21730 1.43184 0.93724 0.99118 0.92721 1.25886 0.95271 0.97559 1.00674 1.70057 1.46293 1.16451 1.24197 0.85356 0.78123 0.78988 0.78270 1.18917 1.19382 1.20977 1.22257 1.04059 0.98177 0.92354 1.21995 0.78155 1.02247 0.97849 1.47249 1.07722 1.59505 1.19112 1.18243 0.83867 0.77561 0.80093 1.90937 1.16721 1.61169 1.78154 1.86302 1.43196 1.65467 1.33477 1.22335 0.87432 0.95196 0.86029 1.22469 0.99087 0.99681 1.02480 1.22436 1.01764 0.97303 1.01792 1.21872 1.01857 0.99365 0.96165 0.90654 0.92597 0.93686 0.93614 0.90777 0.90530 0.91641 0.88171 0.95781 0.98887 0.92449 0.93202 0.86857 0.87704 0.87720 0.91887 0.92826 0.89326 0.89511 0.91793 0.91735 0.91708 0.90867 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 7.61 71.98 0.55 -2.53 16 2 C 0.17 3.63 3.49 44.98 0.16 3.79 16 3 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.10 -2.85 3.94 30.67 0.12 -2.73 16 5 C -0.09 -2.46 1.68 -11.52 -0.02 -2.48 16 6 H 0.13 2.58 7.40 -2.39 -0.02 2.56 16 7 C 0.50 20.35 7.07 87.66 0.62 20.97 16 8 O -0.60 -31.67 15.56 -3.04 -0.05 -31.72 16 9 N -0.61 -25.01 2.86 -851.12 -2.43 -27.45 16 10 C 0.07 1.97 8.80 127.77 1.12 3.10 16 11 C 0.26 13.92 5.16 85.63 0.44 14.36 16 12 C -0.54 -31.02 9.39 25.60 0.24 -30.78 16 13 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.64 13.29 21.44 0.28 -56.35 16 16 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 C -0.13 -2.65 5.02 30.82 0.15 -2.49 16 21 C 0.12 1.84 6.48 86.51 0.56 2.40 16 22 N -0.60 -12.44 2.97 -924.37 -2.74 -15.18 16 23 C 0.65 15.27 7.53 129.79 0.98 16.25 16 24 O -0.58 -15.43 7.45 19.82 0.15 -15.29 16 25 O -0.37 -7.68 8.53 -55.45 -0.47 -8.15 16 26 C 0.13 2.10 1.13 -10.80 -0.01 2.09 16 27 C -0.18 -3.24 8.37 71.98 0.60 -2.63 16 28 C -0.18 -2.72 8.37 71.98 0.60 -2.11 16 29 C -0.14 -1.46 8.85 71.98 0.64 -0.83 16 30 H 0.07 1.83 6.66 -2.39 -0.02 1.82 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.26 6.83 -2.39 -0.02 1.25 16 33 H 0.04 1.51 8.13 -2.39 -0.02 1.49 16 34 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 35 H 0.08 1.64 6.92 -2.39 -0.02 1.62 16 36 H 0.06 1.89 8.07 -2.39 -0.02 1.87 16 37 H 0.10 1.88 6.02 -2.39 -0.01 1.87 16 38 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 39 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 40 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.11 1.87 4.49 -2.39 -0.01 1.86 16 43 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.10 1.47 6.92 -2.39 -0.02 1.45 16 45 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 48 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.06 1.34 5.88 -2.38 -0.01 1.33 16 51 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -79.14 402.33 4.87 -74.28 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.88 Total: 15.77 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 7.22 Total: 17.11 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -4.89 Total: -98.98 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.37 Total: -55.15 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -79.14 4.87 -74.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930593149.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.736 kcal (2) G-P(sol) polarization free energy of solvation -79.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds