Wall clock time and date at job start Wed Apr 1 2020 00:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47407 * 2 1 4 4 C 1.50703 * 109.47538 * 120.00347 * 2 1 3 5 5 H 1.08003 * 119.99432 * 25.53328 * 4 2 1 6 6 C 1.37872 * 120.00236 * 205.53536 * 4 2 1 7 7 N 1.31517 * 120.00178 * 353.30037 * 6 4 2 8 8 Si 1.86803 * 119.99896 * 173.29422 * 6 4 2 9 9 H 1.48494 * 109.46851 * 60.00279 * 8 6 4 10 10 H 1.48503 * 109.47062 * 299.99959 * 8 6 4 11 11 H 1.48506 * 109.46875 * 180.02562 * 8 6 4 12 12 N 1.46506 * 109.47383 * 240.00150 * 2 1 3 13 13 C 1.34771 * 119.99578 * 84.99376 * 12 2 1 14 14 O 1.21283 * 120.00740 * 0.02562 * 13 12 2 15 15 C 1.50707 * 120.00117 * 180.02562 * 13 12 2 16 16 C 1.52995 * 109.47288 * 180.02562 * 15 13 12 17 17 H 1.09002 * 110.64299 * 54.30286 * 16 15 13 18 18 C 1.54323 * 110.72012 * 291.15784 * 16 15 13 19 19 N 1.47023 * 107.27137 * 219.44743 * 18 16 15 20 20 C 1.34779 * 125.65112 * 178.97556 * 19 18 16 21 21 O 1.21513 * 119.99653 * 359.97438 * 20 19 18 22 22 O 1.34634 * 120.00146 * 179.97438 * 20 19 18 23 23 C 1.45200 * 116.99947 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.47404 * 59.99652 * 23 22 20 25 25 C 1.52996 * 109.47317 * 179.97438 * 23 22 20 26 26 C 1.53003 * 109.46842 * 299.99846 * 23 22 20 27 27 C 1.47426 * 108.70232 * 358.94103 * 19 18 16 28 28 C 1.55121 * 104.94398 * 24.00461 * 27 19 18 29 29 H 1.08997 * 110.93459 * 81.21451 * 28 27 19 30 30 C 1.53003 * 111.16098 * 205.13327 * 28 27 19 31 31 H 1.08998 * 109.47130 * 55.76689 * 1 2 3 32 32 H 1.08997 * 109.47216 * 175.76900 * 1 2 3 33 33 H 1.09002 * 109.47033 * 295.76453 * 1 2 3 34 34 H 0.97001 * 119.99741 * 354.59531 * 7 6 4 35 35 H 0.96991 * 120.00178 * 265.00716 * 12 2 1 36 36 H 1.08998 * 109.46822 * 300.00680 * 15 13 12 37 37 H 1.09007 * 109.46483 * 60.00083 * 15 13 12 38 38 H 1.09000 * 109.88128 * 338.86134 * 18 16 15 39 39 H 1.08991 * 109.88208 * 100.02906 * 18 16 15 40 40 H 1.08998 * 109.47268 * 60.00409 * 24 23 22 41 41 H 1.08997 * 109.47072 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.47441 * 300.00095 * 24 23 22 43 43 H 1.09008 * 109.47297 * 59.99315 * 25 23 22 44 44 H 1.08997 * 109.47298 * 179.97438 * 25 23 22 45 45 H 1.08999 * 109.46983 * 300.00190 * 25 23 22 46 46 H 1.08997 * 109.47549 * 59.99930 * 26 23 22 47 47 H 1.08997 * 109.47194 * 180.02562 * 26 23 22 48 48 H 1.09008 * 109.46683 * 300.00019 * 26 23 22 49 49 H 1.08998 * 110.36565 * 142.97038 * 27 19 18 50 50 H 1.09006 * 110.36589 * 265.28957 * 27 19 18 51 51 H 1.09002 * 109.46872 * 172.16878 * 30 28 27 52 52 H 1.08998 * 109.46723 * 292.16514 * 30 28 27 53 53 H 1.08992 * 109.47259 * 52.17140 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 1.4167 -1.4549 1.7133 6 6 3.2780 -0.4102 1.7396 7 7 4.0807 0.3969 1.0807 8 14 3.8254 -1.1494 3.3654 9 1 3.8288 -2.6306 3.2595 10 1 2.8886 -0.7320 4.4394 11 1 5.1939 -0.6728 3.6901 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8589 1.1587 -2.4115 15 6 2.6488 -0.7286 -3.5878 16 6 2.7009 0.2547 -4.7588 17 1 3.2890 1.1341 -4.4963 18 6 1.2772 0.6603 -5.1948 19 7 1.2736 0.7297 -6.6634 20 6 0.2095 1.0332 -7.4329 21 8 -0.8630 1.2784 -6.9171 22 8 0.3349 1.0647 -8.7731 23 6 -0.8525 1.3996 -9.5386 24 6 -1.3411 2.7932 -9.1385 25 6 -0.5176 1.3862 -11.0314 26 6 -1.9501 0.3728 -9.2524 27 6 2.6270 0.4131 -7.1549 28 6 3.2750 -0.4313 -6.0265 29 1 2.9557 -1.4717 -6.0863 30 6 4.8009 -0.3251 -6.0641 31 1 -0.3633 0.5781 -0.8496 32 1 -0.3633 -1.0248 -0.0758 33 1 -0.3633 0.4467 0.9255 34 1 3.8296 0.7185 0.2007 35 1 2.2490 -1.6317 -1.1527 36 1 3.6480 -1.1211 -3.3987 37 1 1.9759 -1.5505 -3.8326 38 1 0.5591 -0.0870 -4.8573 39 1 1.0251 1.6349 -4.7771 40 1 -0.5592 3.5247 -9.3424 41 1 -2.2328 3.0443 -9.7129 42 1 -1.5797 2.8032 -8.0749 43 1 -0.1693 0.3935 -11.3167 44 1 -1.4092 1.6372 -11.6060 45 1 0.2642 2.1179 -11.2349 46 1 -2.1887 0.3827 -8.1889 47 1 -2.8414 0.6239 -9.8273 48 1 -1.6020 -0.6201 -9.5374 49 1 2.5700 -0.1647 -8.0774 50 1 3.1965 1.3288 -7.3144 51 1 5.2207 -0.8111 -5.1833 52 1 5.1770 -0.8140 -6.9627 53 1 5.0919 0.7252 -6.0729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931155353.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:53 Heat of formation + Delta-G solvation = -162.982491 kcal Electronic energy + Delta-G solvation = -31025.642354 eV Core-core repulsion = 26895.612644 eV Total energy + Delta-G solvation = -4130.029710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.99016 -40.89233 -39.66857 -37.79793 -36.82693 -35.29750 -34.21104 -34.01442 -32.55998 -31.23014 -28.40355 -28.32167 -28.19694 -27.38468 -26.74871 -24.46117 -23.01910 -22.34855 -21.24867 -20.85930 -20.50228 -19.28782 -18.94563 -17.91716 -17.64445 -17.47139 -16.89563 -16.29138 -16.16560 -15.88203 -15.61795 -15.43551 -15.32078 -15.06408 -14.74607 -14.60919 -14.23864 -14.05655 -13.77197 -13.71367 -13.43475 -13.32857 -13.13080 -13.08981 -12.94030 -12.91291 -12.89325 -12.77415 -12.70169 -12.59971 -12.46201 -12.28949 -12.07334 -11.88696 -11.85690 -11.78077 -11.56882 -11.43346 -11.15732 -10.97566 -10.70547 -10.48152 -9.87526 -9.63907 -8.68760 -6.50343 0.97695 1.57325 1.62648 1.65996 1.83567 1.90086 2.52300 2.59177 2.84235 3.23848 3.39545 3.49787 3.71063 3.73124 3.77235 3.92099 3.99359 4.15098 4.30291 4.36647 4.45006 4.46138 4.52053 4.56400 4.58202 4.60126 4.66172 4.70842 4.72483 4.73109 4.74243 4.80995 4.81681 4.85994 4.88023 5.02556 5.05866 5.11627 5.16742 5.20097 5.24910 5.27842 5.31104 5.31859 5.40662 5.49042 5.76127 6.01945 6.14315 6.35580 6.46280 7.03762 7.17920 7.38497 7.59494 8.67253 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002309 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.965396 B =12121.481527 C =13041.657227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.239 3.761 3 H 0.003 0.997 4 C -0.614 4.614 5 H 0.061 0.939 6 C -0.018 4.018 7 N -0.920 5.920 8 Si 1.118 2.882 9 H -0.262 1.262 10 H -0.274 1.274 11 H -0.289 1.289 12 N -0.706 5.706 13 C 0.486 3.514 14 O -0.603 6.603 15 C -0.120 4.120 16 C -0.070 4.070 17 H 0.078 0.922 18 C 0.144 3.856 19 N -0.606 5.606 20 C 0.659 3.341 21 O -0.598 6.598 22 O -0.360 6.360 23 C 0.122 3.878 24 C -0.181 4.181 25 C -0.132 4.132 26 C -0.179 4.179 27 C 0.106 3.894 28 C -0.086 4.086 29 H 0.105 0.895 30 C -0.138 4.138 31 H 0.026 0.974 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.260 0.740 35 H 0.398 0.602 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.076 0.924 51 H 0.065 0.935 52 H 0.082 0.918 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -5.205 -25.161 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.137 3.863 3 H 0.021 0.979 4 C -0.652 4.652 5 H 0.079 0.921 6 C -0.220 4.220 7 N -0.555 5.555 8 Si 0.939 3.061 9 H -0.186 1.186 10 H -0.199 1.199 11 H -0.215 1.215 12 N -0.356 5.356 13 C 0.274 3.726 14 O -0.486 6.486 15 C -0.160 4.160 16 C -0.089 4.089 17 H 0.096 0.904 18 C 0.022 3.978 19 N -0.347 5.347 20 C 0.415 3.585 21 O -0.490 6.490 22 O -0.275 6.275 23 C 0.086 3.914 24 C -0.238 4.238 25 C -0.189 4.189 26 C -0.236 4.236 27 C -0.015 4.015 28 C -0.105 4.105 29 H 0.123 0.877 30 C -0.196 4.196 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.233 0.767 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.101 0.899 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.786 -4.251 -24.060 24.498 hybrid contribution -1.523 0.291 -0.578 1.654 sum -3.309 -3.960 -24.638 25.173 Atomic orbital electron populations 1.21883 0.96833 1.00623 0.99572 1.18605 0.91248 0.92615 0.83802 0.97926 1.22356 1.04496 1.26468 1.11892 0.92080 1.27438 0.93540 0.94435 1.06573 1.70870 1.39105 1.31235 1.14292 0.82925 0.75703 0.76351 0.71088 1.18632 1.19927 1.21478 1.47219 1.64684 1.14046 1.09611 1.21565 0.77499 0.87400 0.86171 1.90614 1.53532 1.18283 1.86193 1.21736 1.04867 0.98922 0.90513 1.21950 0.93808 0.98665 0.94496 0.90383 1.21789 0.98519 1.00747 0.76731 1.47304 1.09790 1.70964 1.06628 1.17698 0.82768 0.76687 0.81346 1.90904 1.27251 1.55979 1.74865 1.86304 1.41988 1.83355 1.15826 1.22483 0.82055 0.95119 0.91752 1.22480 1.02763 0.95437 1.03136 1.21865 1.04103 1.03923 0.88972 1.22467 0.99046 0.98737 1.03378 1.22679 0.80287 1.00044 0.98500 1.22483 0.97092 0.99921 0.91021 0.87654 1.21708 0.91804 1.02596 1.03483 0.95504 0.92405 0.92826 0.92972 0.76695 0.86331 0.86673 0.92533 0.93927 0.92004 0.88767 0.92833 0.90829 0.87809 0.91136 0.92711 0.88865 0.91605 0.88271 0.90594 0.91586 0.89938 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 9.46 71.98 0.68 -5.19 16 2 C 0.24 12.17 2.05 44.24 0.09 12.26 16 3 H 0.00 0.16 6.58 -2.38 -0.02 0.15 16 4 C -0.61 -32.38 8.50 25.60 0.22 -32.16 16 5 H 0.06 3.11 7.82 -2.91 -0.02 3.08 16 6 C -0.02 -0.98 5.45 84.65 0.46 -0.52 16 7 N -0.92 -54.62 13.56 21.45 0.29 -54.33 16 8 Si 1.12 47.06 29.91 68.60 2.05 49.11 16 9 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 12 N -0.71 -30.40 5.01 -446.07 -2.24 -32.63 16 13 C 0.49 19.69 7.60 87.66 0.67 20.36 16 14 O -0.60 -29.72 14.65 -3.04 -0.04 -29.76 16 15 C -0.12 -3.24 5.09 29.85 0.15 -3.09 16 16 C -0.07 -1.81 1.99 -9.61 -0.02 -1.83 16 17 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 18 C 0.14 4.54 5.58 86.73 0.48 5.02 16 19 N -0.61 -16.82 3.33 -941.67 -3.13 -19.95 16 20 C 0.66 20.18 7.93 129.79 1.03 21.21 16 21 O -0.60 -22.04 12.21 19.80 0.24 -21.80 16 22 O -0.36 -8.92 9.42 -55.44 -0.52 -9.44 16 23 C 0.12 2.39 1.13 -10.80 -0.01 2.38 16 24 C -0.18 -3.73 8.37 71.98 0.60 -3.12 16 25 C -0.13 -1.52 8.85 71.98 0.64 -0.88 16 26 C -0.18 -3.50 8.37 71.98 0.60 -2.90 16 27 C 0.11 2.03 6.41 86.93 0.56 2.59 16 28 C -0.09 -1.48 3.10 -9.32 -0.03 -1.51 16 29 H 0.11 1.51 8.05 -2.39 -0.02 1.49 16 30 C -0.14 -1.91 9.31 71.98 0.67 -1.24 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.26 16.05 6.93 -92.71 -0.64 15.41 16 35 H 0.40 15.20 8.59 -92.72 -0.80 14.40 16 36 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.12 2.52 8.01 -2.38 -0.02 2.50 16 38 H 0.06 1.87 7.73 -2.39 -0.02 1.85 16 39 H 0.04 1.66 7.78 -2.39 -0.02 1.64 16 40 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.51 5.88 -2.38 -0.01 1.50 16 43 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.05 1.47 5.88 -2.39 -0.01 1.46 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.10 1.54 8.04 -2.39 -0.02 1.52 16 50 H 0.08 1.39 7.99 -2.38 -0.02 1.37 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 52 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 Total: -1.00 -75.26 419.63 3.65 -71.61 By element: Atomic # 1 Polarization: 35.63 SS G_CDS: 0.21 Total: 35.84 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.79 Total: 11.37 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -5.08 Total: -106.92 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -0.32 Total: -61.00 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.05 Total: 49.11 kcal Total: -75.26 3.65 -71.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931155353.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.376 kcal (2) G-P(sol) polarization free energy of solvation -75.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds