Wall clock time and date at job start Tue Mar 31 2020 23:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46837 * 2 1 4 4 C 1.50702 * 109.47069 * 240.00553 * 2 1 3 5 5 H 1.08001 * 119.99923 * 239.99875 * 4 2 1 6 6 C 1.37877 * 119.99936 * 59.71923 * 4 2 1 7 7 N 1.31509 * 120.00231 * 0.28006 * 6 4 2 8 8 Si 1.86800 * 119.99731 * 180.27729 * 6 4 2 9 9 H 1.48500 * 109.47257 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47067 * 120.00225 * 8 6 4 11 11 H 1.48504 * 109.46765 * 240.00088 * 8 6 4 12 12 N 1.46495 * 109.47236 * 120.00258 * 2 1 3 13 13 C 1.34778 * 120.00085 * 274.99812 * 12 2 1 14 14 O 1.21278 * 119.99889 * 0.02562 * 13 12 2 15 15 C 1.50700 * 120.00235 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.45721 * 59.99842 * 15 13 12 17 17 C 1.53045 * 109.45757 * 300.03113 * 15 13 12 18 18 C 1.53192 * 109.30920 * 178.60344 * 17 15 13 19 19 N 1.46920 * 108.76981 * 54.64852 * 18 17 15 20 20 C 1.34776 * 120.62865 * 126.40365 * 19 18 17 21 21 O 1.21512 * 119.99936 * 185.07132 * 20 19 18 22 22 O 1.34642 * 120.00128 * 5.06993 * 20 19 18 23 23 C 1.45202 * 117.00100 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.46768 * 60.00102 * 23 22 20 25 25 C 1.53001 * 109.46993 * 180.02562 * 23 22 20 26 26 C 1.52998 * 109.47239 * 299.99920 * 23 22 20 27 27 C 1.46922 * 118.74281 * 306.38973 * 19 18 17 28 28 H 1.09007 * 109.58448 * 293.81821 * 27 19 18 29 29 C 1.52995 * 109.58842 * 173.39277 * 27 19 18 30 30 C 1.53037 * 109.46162 * 179.97438 * 15 13 12 31 31 H 1.09006 * 109.47022 * 299.99746 * 1 2 3 32 32 H 1.09000 * 109.47071 * 59.99626 * 1 2 3 33 33 H 1.09003 * 109.46837 * 180.02562 * 1 2 3 34 34 H 0.97001 * 120.00160 * 180.02562 * 7 6 4 35 35 H 0.97000 * 119.99846 * 95.00482 * 12 2 1 36 36 H 1.08997 * 109.49265 * 298.56131 * 17 15 13 37 37 H 1.08998 * 109.49944 * 58.65743 * 17 15 13 38 38 H 1.09005 * 109.59633 * 294.86265 * 18 17 15 39 39 H 1.09000 * 109.69772 * 174.50660 * 18 17 15 40 40 H 1.09003 * 109.47087 * 60.00172 * 24 23 22 41 41 H 1.09002 * 109.46686 * 179.97438 * 24 23 22 42 42 H 1.08992 * 109.47127 * 299.99565 * 24 23 22 43 43 H 1.09000 * 109.47040 * 59.99992 * 25 23 22 44 44 H 1.09002 * 109.47106 * 179.97438 * 25 23 22 45 45 H 1.08998 * 109.46987 * 300.00330 * 25 23 22 46 46 H 1.09005 * 109.47019 * 60.00268 * 26 23 22 47 47 H 1.08998 * 109.47263 * 179.97438 * 26 23 22 48 48 H 1.09000 * 109.47174 * 300.00240 * 26 23 22 49 49 H 1.09002 * 109.47467 * 304.27595 * 29 27 19 50 50 H 1.09000 * 109.47474 * 64.27870 * 29 27 19 51 51 H 1.09001 * 109.47507 * 184.27885 * 29 27 19 52 52 H 1.09004 * 109.49845 * 301.33633 * 30 15 13 53 53 H 1.08997 * 109.50149 * 61.39949 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6945 -0.2425 -2.4828 7 7 0.9384 0.8267 -2.6034 8 14 2.3108 -1.1275 -4.0080 9 1 3.1364 -2.2938 -3.6039 10 1 1.1524 -1.5959 -4.8105 11 1 3.1330 -0.1966 -4.8221 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6501 -0.7286 3.5874 16 1 3.6494 -1.1203 3.3975 17 6 1.7065 -1.8836 3.9308 18 6 2.2396 -2.6246 5.1610 19 7 2.4299 -1.6570 6.2500 20 6 1.8666 -1.8622 7.4571 21 8 1.9539 -1.0119 8.3207 22 8 1.2071 -3.0093 7.7061 23 6 0.6263 -3.1622 9.0280 24 6 -0.3886 -2.0434 9.2716 25 6 -0.0761 -4.5182 9.1227 26 6 1.7319 -3.0865 10.0828 27 6 3.2462 -0.4616 5.9984 28 1 4.2814 -0.7558 5.8254 29 6 3.1710 0.4744 7.2062 30 6 2.7020 0.2550 4.7586 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.7004 1.1556 -3.4843 35 1 2.2491 -1.6318 1.1524 36 1 0.7129 -1.4901 4.1451 37 1 1.6516 -2.5717 3.0872 38 1 3.1927 -3.0953 4.9197 39 1 1.5237 -3.3864 5.4698 40 1 -1.1763 -2.0975 8.5201 41 1 -0.8250 -2.1585 10.2638 42 1 0.1122 -1.0777 9.2043 43 1 0.6472 -5.3150 8.9493 44 1 -0.5118 -4.6332 10.1152 45 1 -0.8637 -4.5726 8.3712 46 1 2.2327 -2.1206 10.0156 47 1 1.2958 -3.2008 11.0752 48 1 2.4549 -3.8835 9.9092 49 1 2.1283 0.7107 7.4185 50 1 3.6165 -0.0140 8.0728 51 1 3.7145 1.3937 6.9880 52 1 3.3558 1.0893 4.5043 53 1 1.6990 0.6286 4.9648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931159299.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:13 Heat of formation + Delta-G solvation = -139.559921 kcal Electronic energy + Delta-G solvation = -31464.974608 eV Core-core repulsion = 27335.960577 eV Total energy + Delta-G solvation = -4129.014031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.12726 -40.93993 -39.41542 -37.52116 -36.69064 -35.25056 -34.49345 -33.76226 -33.31842 -30.76940 -28.64555 -28.31338 -28.23839 -27.34812 -26.27585 -24.18242 -23.59626 -22.56039 -21.58648 -20.88173 -20.24797 -18.86672 -18.50338 -17.57498 -17.52625 -17.22305 -17.09436 -16.51791 -16.06780 -15.94818 -15.57233 -15.47541 -15.07159 -14.85248 -14.67457 -14.48080 -14.37891 -14.18086 -13.64752 -13.58693 -13.48113 -13.17540 -13.09992 -13.01654 -12.98238 -12.85297 -12.80807 -12.74418 -12.70676 -12.59368 -12.39760 -12.27683 -12.10831 -12.07830 -11.99369 -11.74297 -11.64116 -11.27205 -11.08136 -10.69429 -10.55450 -10.26949 -9.73026 -9.65863 -8.16735 -6.34256 1.17220 1.45232 1.46307 1.58285 1.81277 1.85993 2.36005 2.63206 2.85715 3.13922 3.61056 3.73379 3.79450 3.81489 3.86085 3.96073 4.00595 4.15642 4.25036 4.35956 4.53012 4.55507 4.58817 4.65925 4.67817 4.73550 4.77300 4.81230 4.82000 4.87605 4.90062 4.91287 4.92838 4.98655 5.08775 5.11250 5.12990 5.16072 5.29655 5.33083 5.34919 5.40178 5.45081 5.54872 5.63296 5.64819 5.70113 5.92254 6.11093 6.42035 6.74746 7.00292 7.34021 7.36511 7.60480 8.89760 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021173 B = 0.002307 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.152667 B =12133.394627 C =12631.019016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.006 1.006 4 C -0.542 4.542 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.280 1.280 11 H -0.286 1.286 12 N -0.702 5.702 13 C 0.500 3.500 14 O -0.604 6.604 15 C -0.096 4.096 16 H 0.128 0.872 17 C -0.119 4.119 18 C 0.119 3.881 19 N -0.595 5.595 20 C 0.646 3.354 21 O -0.579 6.579 22 O -0.370 6.370 23 C 0.126 3.874 24 C -0.180 4.180 25 C -0.136 4.136 26 C -0.176 4.176 27 C 0.165 3.835 28 H 0.104 0.896 29 C -0.128 4.128 30 C -0.103 4.103 31 H 0.007 0.993 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.406 0.594 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.050 0.950 50 H 0.068 0.932 51 H 0.056 0.944 52 H 0.078 0.922 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -14.265 23.677 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.012 0.988 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.180 1.180 10 H -0.206 1.206 11 H -0.212 1.212 12 N -0.351 5.351 13 C 0.288 3.712 14 O -0.486 6.486 15 C -0.117 4.117 16 H 0.146 0.854 17 C -0.158 4.158 18 C -0.003 4.003 19 N -0.335 5.335 20 C 0.402 3.598 21 O -0.470 6.470 22 O -0.285 6.285 23 C 0.090 3.910 24 C -0.237 4.237 25 C -0.193 4.193 26 C -0.233 4.233 27 C 0.064 3.936 28 H 0.122 0.878 29 C -0.185 4.185 30 C -0.142 4.142 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.096 0.904 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.710 -13.130 23.881 27.387 hybrid contribution -0.128 0.158 -1.183 1.200 sum 2.582 -12.971 22.698 26.270 Atomic orbital electron populations 1.21893 0.98561 0.99437 0.99288 1.18306 0.90926 0.91851 0.82280 0.98759 1.21584 1.32279 1.13554 0.90646 0.90544 1.25834 0.94912 0.95617 1.02471 1.70068 1.37116 1.24140 1.24486 0.85281 0.78041 0.78558 0.78348 1.18041 1.20595 1.21174 1.46255 1.65032 1.14225 1.09589 1.21339 0.77294 0.86949 0.85646 1.90637 1.53160 1.18792 1.86015 1.21342 1.02490 0.96729 0.91140 0.85403 1.21903 0.97876 0.96480 0.99543 1.21856 1.03576 0.90239 0.84587 1.47218 1.52234 1.24817 1.09260 1.18267 0.77436 0.80880 0.83241 1.90955 1.64262 1.44873 1.46877 1.86303 1.66279 1.37820 1.38072 1.22337 0.92980 0.97618 0.78065 1.22464 0.98637 0.99384 1.03195 1.21872 1.00511 0.92824 1.04056 1.22439 0.98583 1.03286 0.99009 1.21337 0.94097 0.83443 0.94718 0.87817 1.22094 1.02286 0.97998 0.96138 1.21742 1.01823 0.97634 0.92996 0.97359 0.91671 0.93914 0.92646 0.75840 0.93091 0.87875 0.87965 0.87990 0.92714 0.89334 0.91921 0.90980 0.88237 0.91614 0.91726 0.89489 0.91882 0.93143 0.91312 0.92510 0.90374 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 2 C 0.27 13.86 2.56 44.25 0.11 13.97 16 3 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 4 C -0.54 -28.12 8.73 25.60 0.22 -27.90 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -52.73 11.31 21.45 0.24 -52.49 16 8 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 9 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 12 N -0.70 -27.82 4.95 -446.10 -2.21 -30.03 16 13 C 0.50 19.16 7.12 87.66 0.62 19.78 16 14 O -0.60 -29.57 15.64 -3.02 -0.05 -29.61 16 15 C -0.10 -2.41 2.49 -11.51 -0.03 -2.44 16 16 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 17 C -0.12 -2.44 5.27 30.67 0.16 -2.28 16 18 C 0.12 1.91 6.43 86.36 0.56 2.47 16 19 N -0.59 -12.39 2.97 -925.25 -2.75 -15.14 16 20 C 0.65 15.30 7.64 129.79 0.99 16.29 16 21 O -0.58 -15.50 7.28 19.80 0.14 -15.35 16 22 O -0.37 -7.72 8.55 -55.52 -0.47 -8.19 16 23 C 0.13 2.11 1.13 -10.79 -0.01 2.10 16 24 C -0.18 -3.22 8.37 71.98 0.60 -2.61 16 25 C -0.14 -1.48 8.85 71.98 0.64 -0.84 16 26 C -0.18 -2.76 8.37 71.98 0.60 -2.15 16 27 C 0.17 3.46 3.49 44.97 0.16 3.62 16 28 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 29 C -0.13 -2.95 7.59 71.98 0.55 -2.40 16 30 C -0.10 -2.70 3.94 30.67 0.12 -2.58 16 31 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.06 3.64 6.06 -2.39 -0.01 3.63 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.41 12.99 7.94 -92.71 -0.74 12.26 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.77 7.53 -2.39 -0.02 1.75 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.10 1.54 6.96 -2.39 -0.02 1.52 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.47 5.88 -2.39 -0.01 1.46 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 1.35 5.88 -2.38 -0.01 1.34 16 47 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.05 1.40 6.74 -2.39 -0.02 1.39 16 50 H 0.07 1.63 6.76 -2.39 -0.02 1.62 16 51 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.08 2.16 8.07 -2.39 -0.02 2.14 16 53 H 0.05 1.48 8.13 -2.39 -0.02 1.46 16 Total: -1.00 -71.47 405.67 3.50 -67.98 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.15 Total: 29.45 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.41 Total: 10.00 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -4.72 Total: -97.67 kcal Atomic # 8 Polarization: -52.78 SS G_CDS: -0.38 Total: -53.16 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.47 3.50 -67.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931159299.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.582 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds