Wall clock time and date at job start Wed Apr 1 2020 00:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50856 * 2 1 4 4 C 1.53302 * 109.51477 * 120.09702 * 2 1 3 5 5 N 1.47153 * 108.39869 * 172.26955 * 4 2 1 6 6 C 1.36936 * 120.98788 * 129.40001 * 5 4 2 7 7 H 1.07997 * 120.00040 * 333.45347 * 6 5 4 8 8 C 1.38810 * 120.00170 * 153.45634 * 6 5 4 9 9 N 1.31625 * 119.99940 * 343.50299 * 8 6 5 10 10 Si 1.86797 * 120.00175 * 163.50046 * 8 6 5 11 11 H 1.48498 * 109.47057 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47248 * 120.00194 * 10 8 6 13 13 H 1.48501 * 109.47224 * 239.99936 * 10 8 6 14 14 C 1.47163 * 118.01480 * 309.45574 * 5 4 2 15 15 C 1.53253 * 108.44172 * 50.41847 * 14 5 4 16 16 C 1.52985 * 109.39915 * 67.86365 * 15 14 5 17 17 C 1.53194 * 109.35116 * 181.12405 * 16 15 14 18 18 N 1.46938 * 108.77246 * 305.42398 * 17 16 15 19 19 C 1.34781 * 120.64080 * 233.65018 * 18 17 16 20 20 O 1.21512 * 119.99546 * 180.02562 * 19 18 17 21 21 O 1.34638 * 119.99888 * 0.02870 * 19 18 17 22 22 C 1.45203 * 116.99760 * 179.97438 * 21 19 18 23 23 C 1.53004 * 109.47172 * 59.99581 * 22 21 19 24 24 C 1.52998 * 109.46983 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.47092 * 299.99909 * 22 21 19 26 26 C 1.46921 * 118.71462 * 53.67386 * 18 17 16 27 27 C 1.53000 * 109.35965 * 187.94784 * 15 14 5 28 28 O 1.42902 * 109.32535 * 307.88341 * 15 14 5 29 29 H 1.09002 * 109.47087 * 299.90186 * 1 2 3 30 30 H 1.08996 * 109.47268 * 59.90121 * 1 2 3 31 31 H 1.09003 * 109.46751 * 179.90620 * 1 2 3 32 32 H 1.09002 * 109.68428 * 292.00420 * 4 2 1 33 33 H 1.09000 * 109.68028 * 52.53072 * 4 2 1 34 34 H 0.97005 * 119.99720 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.64751 * 290.68974 * 14 5 4 36 36 H 1.09003 * 109.70980 * 170.18434 * 14 5 4 37 37 H 1.09006 * 109.48710 * 301.07928 * 16 15 14 38 38 H 1.08993 * 109.49704 * 61.15498 * 16 15 14 39 39 H 1.09005 * 109.58429 * 185.64153 * 17 16 15 40 40 H 1.08999 * 109.59449 * 65.21276 * 17 16 15 41 41 H 1.08997 * 109.47118 * 60.00107 * 23 22 21 42 42 H 1.08999 * 109.46862 * 180.02562 * 23 22 21 43 43 H 1.09007 * 109.47199 * 300.00088 * 23 22 21 44 44 H 1.08992 * 109.47107 * 60.00153 * 24 22 21 45 45 H 1.09002 * 109.46586 * 180.02562 * 24 22 21 46 46 H 1.08997 * 109.47284 * 299.99879 * 24 22 21 47 47 H 1.08998 * 109.47588 * 59.99353 * 25 22 21 48 48 H 1.08999 * 109.47280 * 180.02562 * 25 22 21 49 49 H 1.09006 * 109.46885 * 299.99647 * 25 22 21 50 50 H 1.09001 * 109.58295 * 186.53487 * 26 18 17 51 51 H 1.09006 * 109.70675 * 66.18435 * 26 18 17 52 52 H 1.09002 * 109.49085 * 298.81075 * 27 15 14 53 53 H 1.08996 * 109.49310 * 58.86338 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0421 -0.7246 1.2501 5 7 3.5014 -0.8748 1.1348 6 6 4.3321 -0.4946 2.1549 7 1 4.0231 0.2780 2.8434 8 6 5.5713 -1.1019 2.3039 9 7 5.8236 -2.2408 1.6940 10 14 6.8809 -0.3031 3.3698 11 1 6.3515 0.9620 3.9395 12 1 7.2524 -1.2259 4.4724 13 1 8.0801 -0.0101 2.5444 14 6 4.0413 -1.4448 -0.1099 15 6 3.4306 -0.6883 -1.2945 16 6 3.9556 0.7486 -1.3048 17 6 3.3229 1.5119 -2.4727 18 7 3.5736 0.7680 -3.7149 19 6 4.1473 1.3730 -4.7739 20 8 4.3488 0.7468 -5.7956 21 8 4.4970 2.6710 -4.6997 22 6 5.1106 3.2568 -5.8782 23 6 4.1429 3.1585 -7.0593 24 6 5.4355 4.7270 -5.6066 25 6 6.3993 2.5021 -6.2107 26 6 3.1864 -0.6477 -3.7803 27 6 3.8206 -1.3875 -2.5983 28 8 2.0075 -0.6768 -1.1652 29 1 -0.3633 0.5123 0.8909 30 1 -0.3633 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0017 32 1 1.8023 -0.1393 2.1379 33 1 1.5762 -1.7074 1.3215 34 1 6.6895 -2.6654 1.7985 35 1 3.7783 -2.5007 -0.1738 36 1 5.1258 -1.3353 -0.1242 37 1 3.6944 1.2380 -0.3665 38 1 5.0393 0.7391 -1.4211 39 1 3.7682 2.5042 -2.5448 40 1 2.2487 1.6020 -2.3113 41 1 3.2248 3.6962 -6.8224 42 1 4.6037 3.5978 -7.9440 43 1 3.9110 2.1112 -7.2529 44 1 6.1248 4.7973 -4.7652 45 1 5.8957 5.1668 -6.4915 46 1 4.5172 5.2644 -5.3700 47 1 6.1675 1.4548 -6.4042 48 1 6.8601 2.9421 -7.0951 49 1 7.0887 2.5721 -5.3693 50 1 3.5415 -1.0808 -4.7154 51 1 2.1012 -0.7348 -3.7262 52 1 4.9054 -1.3802 -2.7045 53 1 3.4639 -2.4172 -2.5795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933856220.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:07 Heat of formation + Delta-G solvation = -117.789825 kcal Electronic energy + Delta-G solvation = -32903.926253 eV Core-core repulsion = 28775.856244 eV Total energy + Delta-G solvation = -4128.070009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.02871 -41.02432 -38.73778 -37.22030 -36.24270 -35.18781 -34.18310 -33.17449 -32.14649 -31.34179 -28.53515 -28.33234 -28.26519 -27.42166 -25.35386 -24.60268 -23.50320 -23.02106 -21.74510 -20.62317 -20.06792 -19.01579 -18.76476 -17.68536 -17.33510 -17.12647 -16.57126 -16.32527 -15.98530 -15.86140 -15.54310 -15.43137 -15.40817 -15.12632 -14.83020 -14.59999 -14.41005 -13.77313 -13.70047 -13.42150 -13.28402 -13.17472 -13.07146 -13.01341 -12.86385 -12.84475 -12.83585 -12.78623 -12.63035 -12.43759 -12.35546 -12.30079 -12.24773 -12.17152 -12.04729 -11.69252 -11.56284 -11.35696 -11.04139 -10.91774 -10.70118 -10.39613 -9.73866 -8.67686 -7.88626 -5.35460 1.16033 1.43668 1.46377 1.55927 1.76402 2.47176 2.78859 2.85887 3.24973 3.52461 3.77270 3.78300 3.83308 3.90743 3.97675 3.98259 4.05899 4.20823 4.31264 4.38786 4.39024 4.47108 4.56351 4.57598 4.64400 4.70652 4.75994 4.77312 4.79220 4.81926 4.86227 4.89081 4.90558 4.95185 4.98555 5.04695 5.12920 5.13981 5.16424 5.22313 5.31337 5.34532 5.37933 5.43298 5.47817 5.51768 5.58294 5.63943 6.31182 6.34793 6.51011 7.08713 7.28243 7.78175 8.32289 9.16423 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.003670 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.918244 B = 7628.394611 C = 8750.321737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.073 3.927 3 H 0.060 0.940 4 C 0.113 3.887 5 N -0.609 5.609 6 C -0.257 4.257 7 H 0.072 0.928 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.263 1.263 12 H -0.294 1.294 13 H -0.292 1.292 14 C 0.169 3.831 15 C 0.109 3.891 16 C -0.137 4.137 17 C 0.130 3.870 18 N -0.591 5.591 19 C 0.650 3.350 20 O -0.593 6.593 21 O -0.368 6.368 22 C 0.122 3.878 23 C -0.177 4.177 24 C -0.135 4.135 25 C -0.180 4.180 26 C 0.144 3.856 27 C -0.112 4.112 28 O -0.376 6.376 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.011 0.989 34 H 0.249 0.751 35 H -0.008 1.008 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.093 0.907 49 H 0.054 0.946 50 H 0.092 0.908 51 H 0.087 0.913 52 H 0.069 0.931 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 12.772 -14.531 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.015 3.985 3 H 0.078 0.922 4 C -0.013 4.013 5 N -0.333 5.333 6 C -0.387 4.387 7 H 0.089 0.911 8 C -0.244 4.244 9 N -0.582 5.582 10 Si 0.791 3.209 11 H -0.188 1.188 12 H -0.221 1.221 13 H -0.219 1.219 14 C 0.043 3.957 15 C 0.068 3.932 16 C -0.176 4.176 17 C 0.008 3.992 18 N -0.331 5.331 19 C 0.406 3.594 20 O -0.484 6.484 21 O -0.283 6.283 22 C 0.086 3.914 23 C -0.234 4.234 24 C -0.192 4.192 25 C -0.237 4.237 26 C 0.023 3.977 27 C -0.150 4.150 28 O -0.296 6.296 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.029 0.971 34 H 0.058 0.942 35 H 0.010 0.990 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.105 0.895 52 H 0.087 0.913 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.899 12.495 -14.973 20.375 hybrid contribution 1.318 -0.443 1.212 1.844 sum -4.582 12.051 -13.762 18.858 Atomic orbital electron populations 1.21678 0.91080 1.02751 1.03322 1.22609 0.95707 0.95119 0.85107 0.92184 1.21808 0.84335 0.97480 0.97644 1.44323 1.01000 1.73923 1.14047 1.19531 0.97756 1.13876 1.07549 0.91074 1.25743 1.01739 0.95915 1.00954 1.70191 1.22631 1.16937 1.48397 0.85275 0.79290 0.78316 0.78024 1.18751 1.22131 1.21878 1.21134 0.97964 0.92497 0.84136 1.21865 0.81520 0.94746 0.95064 1.22183 1.00060 0.96395 0.98916 1.21628 1.01253 0.94878 0.81490 1.47090 1.61619 1.11954 1.12386 1.18073 0.77024 0.81121 0.83210 1.90850 1.60651 1.66285 1.30654 1.86316 1.74281 1.23623 1.44037 1.22434 0.92427 0.94218 0.82313 1.22449 0.99368 1.03644 0.97910 1.21878 1.03018 0.90283 1.04037 1.22476 0.96311 1.02044 1.02914 1.21485 1.00211 0.77392 0.98611 1.21816 1.00714 1.00073 0.92433 1.87786 1.20264 1.77860 1.43699 0.89624 0.90911 0.92530 0.91555 0.97112 0.94197 0.98978 0.92201 0.90343 0.92794 0.88639 0.90029 0.91862 0.88966 0.91977 0.91696 0.87782 0.91025 0.92033 0.88840 0.92646 0.88936 0.89506 0.91284 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.57 71.98 0.69 -2.46 16 2 C 0.07 2.37 3.01 30.69 0.09 2.46 16 3 H 0.06 1.90 6.29 -2.38 -0.02 1.89 16 4 C 0.11 4.56 6.02 86.36 0.52 5.08 16 5 N -0.61 -29.91 2.56 -697.58 -1.78 -31.69 16 6 C -0.26 -13.75 9.65 84.03 0.81 -12.94 16 7 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 8 C -0.05 -2.64 4.95 84.86 0.42 -2.22 16 9 N -0.94 -54.96 11.14 21.65 0.24 -54.72 16 10 Si 0.96 44.26 29.58 68.60 2.03 46.29 16 11 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 14 C 0.17 8.08 4.09 86.34 0.35 8.43 16 15 C 0.11 4.02 0.68 -10.71 -0.01 4.01 16 16 C -0.14 -4.70 4.33 30.65 0.13 -4.57 16 17 C 0.13 3.62 6.21 86.36 0.54 4.15 16 18 N -0.59 -17.33 2.97 -949.21 -2.82 -20.15 16 19 C 0.65 19.81 7.74 129.79 1.00 20.81 16 20 O -0.59 -19.81 11.29 19.80 0.22 -19.58 16 21 O -0.37 -9.92 8.53 -55.48 -0.47 -10.39 16 22 C 0.12 2.57 1.13 -10.79 -0.01 2.56 16 23 C -0.18 -3.44 8.37 71.98 0.60 -2.84 16 24 C -0.14 -1.96 8.85 71.98 0.64 -1.33 16 25 C -0.18 -3.88 8.37 71.98 0.60 -3.28 16 26 C 0.14 4.12 6.20 86.36 0.54 4.65 16 27 C -0.11 -3.64 5.10 30.66 0.16 -3.49 16 28 O -0.38 -13.07 8.65 -148.98 -1.29 -14.36 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.54 7.96 -2.39 -0.02 2.52 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16 37 H 0.08 2.89 6.16 -2.38 -0.01 2.87 16 38 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 39 H 0.10 2.47 6.93 -2.38 -0.02 2.46 16 40 H 0.08 2.13 7.83 -2.39 -0.02 2.11 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.57 5.88 -2.38 -0.01 1.56 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 1.68 5.88 -2.39 -0.01 1.67 16 48 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 50 H 0.09 2.63 7.00 -2.39 -0.02 2.61 16 51 H 0.09 2.34 7.83 -2.38 -0.02 2.32 16 52 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 53 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -66.00 396.55 4.08 -61.92 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.87 Total: 23.65 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 7.07 Total: 19.04 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -4.36 Total: -106.57 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.54 Total: -44.34 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -66.00 4.08 -61.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933856220.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.867 kcal (2) G-P(sol) polarization free energy of solvation -66.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds