Wall clock time and date at job start Tue Mar 31 2020 23:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.58594 * 2 1 4 4 C 1.53188 * 109.58540 * 239.71247 * 2 1 3 5 5 C 1.53349 * 109.14864 * 185.56886 * 4 2 1 6 6 H 1.09009 * 109.42117 * 301.24575 * 5 4 2 7 7 C 1.50702 * 109.41918 * 181.32957 * 5 4 2 8 8 O 1.21286 * 119.99933 * 359.86493 * 7 5 4 9 9 N 1.34774 * 120.00323 * 179.86934 * 7 5 4 10 10 C 1.46499 * 120.00585 * 179.97438 * 9 7 5 11 11 C 1.52998 * 109.47498 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.47099 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99521 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99638 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00343 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99650 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46820 * 60.00308 * 16 14 12 18 18 H 1.48500 * 109.46987 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47380 * 300.00395 * 16 14 12 20 20 C 1.53032 * 109.61007 * 61.28567 * 5 4 2 21 21 C 1.53190 * 109.31830 * 298.62857 * 20 5 4 22 22 N 1.46928 * 108.77331 * 54.63099 * 21 20 5 23 23 C 1.34778 * 120.63274 * 126.41328 * 22 21 20 24 24 O 1.21503 * 120.00474 * 185.06873 * 23 22 21 25 25 O 1.34639 * 119.99264 * 5.07359 * 23 22 21 26 26 C 1.45208 * 116.99476 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.46874 * 60.00145 * 26 25 23 28 28 C 1.52998 * 109.46957 * 179.97438 * 26 25 23 29 29 C 1.52998 * 109.47146 * 300.00120 * 26 25 23 30 30 H 1.09002 * 109.46674 * 303.87305 * 1 2 3 31 31 H 1.09001 * 109.46590 * 63.86871 * 1 2 3 32 32 H 1.08998 * 109.47224 * 183.86990 * 1 2 3 33 33 H 1.09003 * 109.49962 * 305.38946 * 4 2 1 34 34 H 1.09004 * 109.49956 * 65.48379 * 4 2 1 35 35 H 0.97003 * 119.99856 * 0.02562 * 9 7 5 36 36 H 1.09005 * 109.46867 * 300.00675 * 10 9 7 37 37 H 1.09010 * 109.46574 * 60.00020 * 10 9 7 38 38 H 1.08995 * 109.46998 * 300.00218 * 11 10 9 39 39 H 1.09005 * 109.46867 * 60.00210 * 11 10 9 40 40 H 0.96999 * 119.99515 * 179.97438 * 15 14 12 41 41 H 1.09003 * 109.49766 * 178.67268 * 20 5 4 42 42 H 1.09004 * 109.49723 * 58.58315 * 20 5 4 43 43 H 1.09001 * 109.58257 * 294.85004 * 21 20 5 44 44 H 1.08994 * 109.70523 * 174.48707 * 21 20 5 45 45 H 1.09001 * 109.47461 * 59.99795 * 27 26 25 46 46 H 1.09006 * 109.47133 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47111 * 299.99722 * 27 26 25 48 48 H 1.09007 * 109.46767 * 60.00030 * 28 26 25 49 49 H 1.08995 * 109.47275 * 179.97438 * 28 26 25 50 50 H 1.08996 * 109.47164 * 300.00591 * 28 26 25 51 51 H 1.08996 * 109.47322 * 59.99982 * 29 26 25 52 52 H 1.09001 * 109.46631 * 180.02562 * 29 26 25 53 53 H 1.08999 * 109.46832 * 299.99907 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5706 -0.8445 -1.1672 6 1 4.0070 0.1518 -1.0963 7 6 4.0854 -1.5309 -2.4061 8 8 3.3099 -1.8933 -3.2654 9 7 5.4076 -1.7423 -2.5594 10 6 5.9082 -2.4100 -3.7634 11 6 7.4319 -2.5246 -3.6871 12 6 7.9468 -3.2110 -4.9261 13 1 7.2561 -3.5336 -5.6911 14 6 9.2994 -3.4270 -5.0828 15 7 10.1404 -3.0346 -4.1509 16 14 9.9375 -4.2784 -6.6182 17 1 9.5594 -3.4869 -7.8164 18 1 11.4165 -4.3895 -6.5441 19 1 9.3438 -5.6361 -6.7143 20 6 3.9601 -1.6608 0.0672 21 6 3.4654 -0.9426 1.3265 22 7 2.0225 -0.6980 1.1954 23 6 1.1670 -1.1060 2.1537 24 8 -0.0307 -0.9809 1.9922 25 8 1.6398 -1.6520 3.2899 26 6 0.6607 -2.0681 4.2783 27 6 -0.2630 -3.1240 3.6679 28 6 1.3807 -2.6608 5.4912 29 6 -0.1671 -0.8584 4.7168 30 1 -0.3633 0.5728 0.8533 31 1 -0.3632 0.4526 -0.9227 32 1 -0.3633 -1.0253 0.0694 33 1 1.6049 -1.7247 -1.2920 34 1 1.7638 -0.1656 -2.1372 35 1 6.0279 -1.4529 -1.8720 36 1 5.4722 -3.4066 -3.8340 37 1 5.6307 -1.8290 -4.6430 38 1 7.8681 -1.5282 -3.6163 39 1 7.7090 -3.1059 -2.8076 40 1 11.0919 -3.1870 -4.2610 41 1 5.0446 -1.7626 0.1087 42 1 3.5036 -2.6490 0.0088 43 1 3.9886 0.0075 1.4346 44 1 3.6525 -1.5645 2.2018 45 1 0.3267 -3.9858 3.3555 46 1 -0.9977 -3.4367 4.4100 47 1 -0.7760 -2.7022 2.8037 48 1 2.0392 -1.9088 5.9261 49 1 0.6459 -2.9727 6.2333 50 1 1.9702 -3.5226 5.1784 51 1 -0.6800 -0.4366 3.8526 52 1 -0.9017 -1.1708 5.4591 53 1 0.4911 -0.1062 5.1516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935339222.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:02 Heat of formation + Delta-G solvation = -146.784585 kcal Electronic energy + Delta-G solvation = -30801.746826 eV Core-core repulsion = 26672.419510 eV Total energy + Delta-G solvation = -4129.327316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14190 -41.02415 -39.44019 -37.51756 -36.59583 -35.26362 -34.86924 -33.95742 -33.33562 -31.42946 -28.70435 -28.32052 -28.25278 -27.22721 -25.78305 -24.12480 -23.45391 -22.75358 -21.75016 -20.97890 -20.25017 -18.58623 -18.54730 -17.93615 -17.58141 -17.25094 -16.77405 -16.51502 -16.47351 -16.36191 -15.61306 -15.53119 -15.19252 -15.02270 -14.82389 -14.67719 -14.45847 -14.27859 -13.95010 -13.60685 -13.50861 -13.22824 -13.19296 -13.10643 -13.00351 -12.92358 -12.83461 -12.72843 -12.62988 -12.54900 -12.40835 -12.22311 -12.08771 -12.00578 -11.77945 -11.73874 -11.58390 -11.46570 -11.28038 -10.77092 -10.59648 -10.28664 -9.99756 -9.68115 -8.23951 -6.34034 1.16444 1.41739 1.43481 1.51520 1.66517 1.81684 2.26178 2.45698 2.84070 3.10674 3.54897 3.68059 3.72417 3.80279 3.85052 3.94124 3.99722 4.11850 4.23538 4.33611 4.43468 4.48844 4.52972 4.54927 4.62793 4.65247 4.66548 4.72881 4.80519 4.81001 4.86300 4.87196 4.89620 4.91947 4.96394 5.07463 5.11324 5.14879 5.27118 5.31692 5.32300 5.34502 5.39433 5.50810 5.54026 5.59635 5.64752 5.79501 6.17123 6.40449 6.65871 6.78838 7.31332 7.35047 7.35600 8.87359 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.001998 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.131058 B =14008.248998 C =14811.150574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.163 3.837 3 H 0.104 0.896 4 C -0.103 4.103 5 C -0.097 4.097 6 H 0.132 0.868 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.715 5.715 10 C 0.140 3.860 11 C 0.024 3.976 12 C -0.549 4.549 13 H 0.056 0.944 14 C 0.008 3.992 15 N -0.924 5.924 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.270 1.270 20 C -0.122 4.122 21 C 0.118 3.882 22 N -0.595 5.595 23 C 0.646 3.354 24 O -0.578 6.578 25 O -0.370 6.370 26 C 0.126 3.874 27 C -0.179 4.179 28 C -0.136 4.136 29 C -0.176 4.176 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.412 0.588 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.099 0.901 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.086 0.914 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.714 7.189 22.014 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.062 3.938 3 H 0.122 0.878 4 C -0.142 4.142 5 C -0.118 4.118 6 H 0.150 0.850 7 C 0.296 3.704 8 O -0.473 6.473 9 N -0.366 5.366 10 C 0.016 3.984 11 C -0.013 4.013 12 C -0.587 4.587 13 H 0.074 0.926 14 C -0.191 4.191 15 N -0.563 5.563 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.195 1.195 20 C -0.161 4.161 21 C -0.004 4.004 22 N -0.335 5.335 23 C 0.401 3.599 24 O -0.470 6.470 25 O -0.285 6.285 26 C 0.090 3.910 27 C -0.236 4.236 28 C -0.193 4.193 29 C -0.233 4.233 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.248 0.752 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.117 0.883 50 H 0.084 0.916 51 H 0.083 0.917 52 H 0.105 0.895 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.443 6.935 21.480 29.148 hybrid contribution 0.757 -0.632 -0.861 1.309 sum -17.686 6.303 20.619 27.887 Atomic orbital electron populations 1.22097 0.92700 1.02654 1.01133 1.21359 0.95695 0.95518 0.81215 0.87837 1.21820 0.93208 1.01271 0.97930 1.21417 0.97246 1.01720 0.91394 0.85013 1.21307 0.81809 0.78622 0.88650 1.90662 1.57094 1.53588 1.45989 1.46147 1.07690 1.59822 1.22892 1.21195 0.95511 0.95305 0.86399 1.19117 0.89251 0.96408 0.96549 1.21443 0.92757 1.39115 1.05387 0.92557 1.25838 0.97196 0.96247 0.99802 1.70038 1.03217 1.47736 1.35355 0.85540 0.77143 0.79152 0.79466 1.19424 1.20519 1.19505 1.21925 1.03047 0.98454 0.92650 1.21850 0.78345 1.02261 0.97953 1.47223 1.07621 1.59693 1.19013 1.18280 0.84176 0.76911 0.80486 1.90956 1.14982 1.60853 1.80172 1.86307 1.41802 1.73792 1.26626 1.22331 0.87555 0.94737 0.86366 1.22462 1.00167 0.98133 1.02873 1.21874 1.01581 1.01376 0.94484 1.22437 1.00654 0.97392 1.02832 0.91552 0.92338 0.93111 0.93256 0.89812 0.75194 0.94029 0.93760 0.97096 0.97176 0.92522 0.87915 0.92779 0.88026 0.88188 0.92678 0.89382 0.91840 0.91049 0.88257 0.91617 0.91664 0.89513 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 7.59 71.98 0.55 -2.09 16 2 C 0.16 2.94 3.48 44.97 0.16 3.10 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.10 -2.24 3.97 30.77 0.12 -2.12 16 5 C -0.10 -1.97 2.49 -11.41 -0.03 -2.00 16 6 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 7 C 0.51 15.91 7.15 87.66 0.63 16.54 16 8 O -0.59 -24.04 15.98 -3.05 -0.05 -24.09 16 9 N -0.71 -23.18 5.44 -463.04 -2.52 -25.70 16 10 C 0.14 5.90 5.61 86.38 0.48 6.38 16 11 C 0.02 1.19 5.09 29.85 0.15 1.34 16 12 C -0.55 -30.37 9.11 25.60 0.23 -30.14 16 13 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 14 C 0.01 0.45 5.46 84.65 0.46 0.92 16 15 N -0.92 -53.34 13.29 21.45 0.28 -53.06 16 16 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 C -0.12 -2.10 5.27 30.67 0.16 -1.94 16 21 C 0.12 1.65 6.43 86.36 0.56 2.21 16 22 N -0.59 -11.08 2.97 -925.23 -2.75 -13.83 16 23 C 0.65 14.23 7.64 129.79 0.99 15.22 16 24 O -0.58 -14.56 7.28 19.83 0.14 -14.41 16 25 O -0.37 -7.30 8.55 -55.48 -0.47 -7.78 16 26 C 0.13 2.00 1.13 -10.80 -0.01 1.99 16 27 C -0.18 -3.01 8.37 71.98 0.60 -2.41 16 28 C -0.14 -1.41 8.85 71.98 0.64 -0.77 16 29 C -0.18 -2.61 8.37 71.98 0.60 -2.01 16 30 H 0.07 1.45 6.76 -2.39 -0.02 1.43 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.28 6.73 -2.39 -0.02 1.27 16 33 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.08 1.88 8.08 -2.38 -0.02 1.86 16 35 H 0.41 10.92 7.87 -92.71 -0.73 10.19 16 36 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.10 1.47 7.53 -2.39 -0.02 1.45 16 42 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.93 16 44 H 0.10 1.38 6.96 -2.39 -0.02 1.36 16 45 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 47 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 48 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 52 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 53 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -70.93 410.54 3.11 -67.82 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.15 Total: 21.51 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 6.30 Total: 4.22 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -4.99 Total: -92.59 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.38 Total: -46.28 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -70.93 3.11 -67.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339222.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.966 kcal (2) G-P(sol) polarization free energy of solvation -70.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds