Wall clock time and date at job start Wed Apr 1 2020 00:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.63903 * 2 1 4 4 C 1.54325 * 110.87691 * 236.75791 * 2 1 3 5 5 N 1.47023 * 107.26905 * 219.37236 * 4 2 1 6 6 C 1.34778 * 125.64849 * 178.97876 * 5 4 2 7 7 O 1.21507 * 120.00362 * 179.97438 * 6 5 4 8 8 O 1.34637 * 119.99726 * 359.97438 * 6 5 4 9 9 C 1.45197 * 116.99876 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47626 * 59.99609 * 9 8 6 11 11 C 1.53000 * 109.47070 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.47096 * 299.99543 * 9 8 6 13 13 C 1.47427 * 108.70368 * 358.93967 * 5 4 2 14 14 C 1.54903 * 104.83301 * 24.12760 * 13 5 4 15 15 H 1.08999 * 111.03787 * 81.08272 * 14 13 5 16 16 C 1.53006 * 111.00296 * 204.92057 * 14 13 5 17 17 C 1.50699 * 109.46866 * 287.19459 * 16 14 13 18 18 O 1.21282 * 120.00040 * 359.97438 * 17 16 14 19 19 N 1.34779 * 120.00033 * 180.02562 * 17 16 14 20 20 C 1.46500 * 120.00165 * 179.97438 * 19 17 16 21 21 C 1.52996 * 109.47368 * 179.97438 * 20 19 17 22 22 C 1.50699 * 109.47235 * 180.02562 * 21 20 19 23 23 H 1.08003 * 119.99962 * 359.97438 * 22 21 20 24 24 C 1.37882 * 119.99790 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99980 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99622 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47485 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46928 * 119.99930 * 26 24 22 29 29 H 1.48505 * 109.46854 * 239.99748 * 26 24 22 30 30 H 1.08991 * 109.47231 * 296.85895 * 1 2 3 31 31 H 1.09006 * 109.46707 * 56.85860 * 1 2 3 32 32 H 1.09000 * 109.47026 * 176.85185 * 1 2 3 33 33 H 1.09005 * 109.87662 * 338.78790 * 4 2 1 34 34 H 1.08994 * 109.88786 * 99.95527 * 4 2 1 35 35 H 1.08995 * 109.46940 * 60.00149 * 10 9 8 36 36 H 1.08997 * 109.47350 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46658 * 299.99942 * 10 9 8 38 38 H 1.08999 * 109.47092 * 60.00110 * 11 9 8 39 39 H 1.09005 * 109.47102 * 179.97438 * 11 9 8 40 40 H 1.08995 * 109.47405 * 299.99795 * 11 9 8 41 41 H 1.09000 * 109.47480 * 59.99503 * 12 9 8 42 42 H 1.08994 * 109.47756 * 180.02562 * 12 9 8 43 43 H 1.09006 * 109.46609 * 300.00108 * 12 9 8 44 44 H 1.09000 * 110.36013 * 265.28565 * 13 5 4 45 45 H 1.08997 * 110.36806 * 142.96523 * 13 5 4 46 46 H 1.08993 * 109.46955 * 47.19678 * 16 14 13 47 47 H 1.09000 * 109.47050 * 167.19507 * 16 14 13 48 48 H 0.96996 * 119.99850 * 359.97438 * 19 17 16 49 49 H 1.08996 * 109.47197 * 300.00087 * 20 19 17 50 50 H 1.09004 * 109.46923 * 59.99390 * 20 19 17 51 51 H 1.09004 * 109.47108 * 300.00044 * 21 20 19 52 52 H 1.09000 * 109.46870 * 59.99938 * 21 20 19 53 53 H 0.97002 * 119.99804 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7904 -1.2060 5 7 3.2495 -1.5468 -0.7354 6 6 4.0007 -2.3782 -1.4844 7 8 4.9491 -2.9533 -0.9883 8 8 3.7001 -2.5714 -2.7825 9 6 4.5519 -3.4808 -3.5280 10 6 4.5043 -4.8678 -2.8841 11 6 4.0581 -3.5727 -4.9733 12 6 5.9906 -2.9603 -3.5123 13 6 3.4652 -1.2446 0.6914 14 6 2.0790 -0.7934 1.2151 15 1 1.4465 -1.6526 1.4387 16 6 2.2236 0.1112 2.4406 17 6 2.6403 -0.7162 3.6292 18 8 2.8050 -1.9117 3.5082 19 7 2.8291 -0.1279 4.8270 20 6 3.2337 -0.9323 5.9827 21 6 3.3784 -0.0278 7.2081 22 6 3.7952 -0.8552 8.3967 23 1 3.9418 -1.9198 8.2889 24 6 3.9885 -0.2532 9.6221 25 7 3.8095 1.0430 9.7534 26 14 4.5058 -1.2788 11.0952 27 1 4.6396 -2.7001 10.6865 28 1 5.8093 -0.7859 11.6081 29 1 3.4791 -1.1655 12.1622 30 1 -0.3633 0.4643 0.9167 31 1 -0.3633 0.5619 -0.8606 32 1 -0.3633 -1.0261 -0.0564 33 1 1.3191 -1.4772 -1.5771 34 1 2.3776 -0.1014 -1.9963 35 1 3.4794 -5.2386 -2.8954 36 1 5.1441 -5.5503 -3.4436 37 1 4.8559 -4.8026 -1.8544 38 1 4.0918 -2.5847 -5.4323 39 1 4.6979 -4.2550 -5.5331 40 1 3.0333 -3.9437 -4.9842 41 1 6.3422 -2.8950 -2.4827 42 1 6.6300 -3.6426 -4.0723 43 1 6.0244 -1.9721 -3.9712 44 1 4.1930 -0.4408 0.8030 45 1 3.7992 -2.1363 1.2218 46 1 2.9796 0.8713 2.2440 47 1 1.2691 0.5938 2.6506 48 1 2.6971 0.8282 4.9239 49 1 2.4775 -1.6924 6.1789 50 1 4.1882 -1.4151 5.7730 51 1 4.1349 0.7320 7.0116 52 1 2.4241 0.4552 7.4179 53 1 3.9450 1.4665 10.6155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935339371.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:45 Heat of formation + Delta-G solvation = -162.604912 kcal Electronic energy + Delta-G solvation = -30082.635690 eV Core-core repulsion = 25952.622353 eV Total energy + Delta-G solvation = -4130.013337 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.96333 -40.92692 -39.67494 -37.77032 -36.56817 -35.28744 -34.80138 -34.12437 -32.56930 -31.43497 -28.50384 -28.39944 -28.30496 -27.35921 -26.52307 -24.18775 -22.86483 -22.34591 -21.45624 -20.96119 -20.43841 -18.95219 -18.57099 -18.02674 -17.63689 -17.46010 -16.87796 -16.60533 -16.44803 -16.13976 -15.90665 -15.47189 -15.22219 -14.92047 -14.75923 -14.44731 -14.32929 -14.25763 -14.17860 -13.56166 -13.37823 -13.32822 -13.19878 -13.12160 -12.99962 -12.90516 -12.88595 -12.78070 -12.66746 -12.53069 -12.44933 -12.30062 -12.21877 -11.83703 -11.73776 -11.64758 -11.53870 -11.43337 -11.42103 -11.13769 -10.70995 -10.61274 -9.96591 -9.81912 -8.25240 -6.35139 1.01723 1.39383 1.40729 1.53580 1.68876 1.75238 2.29684 2.47076 2.87260 3.09406 3.40785 3.51754 3.73316 3.74959 3.78122 3.92537 3.95550 4.18832 4.30086 4.37034 4.46994 4.48833 4.53550 4.57289 4.58503 4.63995 4.67315 4.71747 4.73425 4.74538 4.81283 4.84520 4.86340 4.87634 4.93448 5.06023 5.10746 5.15926 5.18365 5.25266 5.31598 5.33069 5.38225 5.43374 5.51928 5.53415 5.59312 5.79489 6.16781 6.38132 6.71252 6.78250 7.20947 7.34081 7.38448 8.86543 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.001901 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.113396 B =14728.970478 C =15946.379646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.085 4.085 3 H 0.115 0.885 4 C 0.105 3.895 5 N -0.607 5.607 6 C 0.657 3.343 7 O -0.599 6.599 8 O -0.361 6.361 9 C 0.122 3.878 10 C -0.181 4.181 11 C -0.132 4.132 12 C -0.179 4.179 13 C 0.129 3.871 14 C -0.074 4.074 15 H 0.076 0.924 16 C -0.118 4.118 17 C 0.498 3.502 18 O -0.592 6.592 19 N -0.719 5.719 20 C 0.140 3.860 21 C 0.023 3.977 22 C -0.548 4.548 23 H 0.055 0.945 24 C 0.008 3.992 25 N -0.924 5.924 26 Si 0.963 3.037 27 H -0.268 1.268 28 H -0.276 1.276 29 H -0.275 1.275 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.049 0.951 46 H 0.125 0.875 47 H 0.136 0.864 48 H 0.413 0.587 49 H 0.042 0.958 50 H 0.039 0.961 51 H 0.009 0.991 52 H 0.011 0.989 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 0.232 -32.314 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.104 4.104 3 H 0.133 0.867 4 C -0.016 4.016 5 N -0.347 5.347 6 C 0.413 3.587 7 O -0.491 6.491 8 O -0.276 6.276 9 C 0.086 3.914 10 C -0.238 4.238 11 C -0.189 4.189 12 C -0.236 4.236 13 C 0.008 3.992 14 C -0.093 4.093 15 H 0.095 0.905 16 C -0.158 4.158 17 C 0.286 3.714 18 O -0.473 6.473 19 N -0.371 5.371 20 C 0.016 3.984 21 C -0.015 4.015 22 C -0.586 4.586 23 H 0.073 0.927 24 C -0.191 4.191 25 N -0.564 5.564 26 Si 0.788 3.212 27 H -0.193 1.193 28 H -0.202 1.202 29 H -0.201 1.201 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.143 0.857 47 H 0.154 0.846 48 H 0.249 0.751 49 H 0.061 0.939 50 H 0.058 0.942 51 H 0.028 0.972 52 H 0.030 0.970 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.492 -0.745 -32.260 32.733 hybrid contribution 0.642 -0.385 1.483 1.661 sum -4.850 -1.130 -30.777 31.177 Atomic orbital electron populations 1.21775 0.92034 1.02324 1.03663 1.22324 0.97582 0.99803 0.90684 0.86651 1.22378 0.86289 0.94911 0.98026 1.47285 1.31291 1.45092 1.11045 1.17770 0.81035 0.78917 0.81011 1.90910 1.31575 1.52711 1.73890 1.86305 1.57260 1.63682 1.20316 1.22459 0.89615 0.87378 0.91919 1.22478 1.02985 0.95986 1.02354 1.21862 1.02909 1.04120 0.89984 1.22463 0.95335 1.02378 1.03439 1.22308 0.98714 1.00477 0.77725 1.22116 0.94615 0.98558 0.94049 0.90529 1.21699 1.06505 0.98116 0.89433 1.21579 0.76241 0.88501 0.85085 1.90689 1.53412 1.17767 1.85469 1.46171 1.69061 1.12729 1.09092 1.21149 0.97802 0.94121 0.85313 1.19135 0.96393 0.94682 0.91269 1.21508 1.46996 0.94932 0.95187 0.92680 1.25840 0.95155 0.96184 1.01898 1.70052 1.49995 1.10694 1.25627 0.85427 0.78080 0.78929 0.78792 1.19271 1.20197 1.20053 0.90851 0.90378 0.93197 0.90826 0.89553 0.92021 0.88888 0.92803 0.90842 0.87915 0.91142 0.92646 0.88981 0.91607 0.90547 0.93250 0.85653 0.84649 0.75132 0.93916 0.94238 0.97222 0.97019 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.17 71.98 0.66 -0.53 16 2 C -0.09 -0.96 3.01 -9.61 -0.03 -0.98 16 3 H 0.12 0.80 8.04 -2.38 -0.02 0.78 16 4 C 0.11 1.59 6.49 86.73 0.56 2.16 16 5 N -0.61 -14.56 3.33 -942.11 -3.13 -17.69 16 6 C 0.66 18.65 7.93 129.79 1.03 19.68 16 7 O -0.60 -20.96 12.14 19.82 0.24 -20.72 16 8 O -0.36 -8.38 9.49 -55.46 -0.53 -8.91 16 9 C 0.12 2.27 1.13 -10.79 -0.01 2.26 16 10 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 11 C -0.13 -1.41 8.85 71.98 0.64 -0.77 16 12 C -0.18 -3.32 8.37 71.98 0.60 -2.72 16 13 C 0.13 3.27 5.89 86.85 0.51 3.78 16 14 C -0.07 -1.39 2.02 -9.40 -0.02 -1.41 16 15 H 0.08 1.82 7.77 -2.39 -0.02 1.80 16 16 C -0.12 -2.02 5.22 29.85 0.16 -1.86 16 17 C 0.50 15.11 7.68 87.66 0.67 15.78 16 18 O -0.59 -23.76 14.95 -3.04 -0.05 -23.81 16 19 N -0.72 -23.43 5.56 -463.06 -2.57 -26.00 16 20 C 0.14 6.04 5.61 86.38 0.48 6.53 16 21 C 0.02 1.14 5.09 29.85 0.15 1.29 16 22 C -0.55 -30.89 9.11 25.60 0.23 -30.66 16 23 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 24 C 0.01 0.46 5.46 84.66 0.46 0.92 16 25 N -0.92 -53.94 13.29 21.45 0.28 -53.66 16 26 Si 0.96 44.00 29.54 68.60 2.03 46.03 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 30 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 31 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.05 0.54 8.07 -2.39 -0.02 0.52 16 33 H 0.07 1.08 7.78 -2.38 -0.02 1.06 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.47 5.88 -2.38 -0.01 1.46 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.05 1.43 5.88 -2.39 -0.01 1.42 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.08 1.77 7.91 -2.39 -0.02 1.75 16 45 H 0.05 1.70 7.39 -2.39 -0.02 1.68 16 46 H 0.13 1.52 7.96 -2.39 -0.02 1.50 16 47 H 0.14 1.47 8.09 -2.39 -0.02 1.46 16 48 H 0.41 10.93 8.47 -92.71 -0.79 10.14 16 49 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 52 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 53 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -77.78 422.21 3.07 -74.71 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.09 Total: 19.57 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.71 Total: 10.48 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -5.42 Total: -97.34 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.33 Total: -53.44 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -77.78 3.07 -74.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339371.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.897 kcal (2) G-P(sol) polarization free energy of solvation -77.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds