Wall clock time and date at job start Wed Apr 1 2020 00:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.57284 * 2 1 4 4 O 1.43070 * 109.52432 * 239.82840 * 2 1 3 5 5 C 1.43075 * 113.58842 * 182.14279 * 4 2 1 6 6 C 1.53140 * 109.15057 * 57.95755 * 5 4 2 7 7 O 1.43077 * 109.15253 * 304.68165 * 6 5 4 8 8 C 1.43075 * 113.58725 * 57.95560 * 7 6 5 9 9 H 1.09002 * 109.57839 * 182.11535 * 8 7 6 10 10 C 1.50697 * 109.52762 * 61.95071 * 8 7 6 11 11 O 1.21275 * 120.00007 * 351.29213 * 10 8 7 12 12 N 1.34778 * 120.00158 * 171.29957 * 10 8 7 13 13 C 1.46497 * 120.00459 * 185.04905 * 12 10 8 14 14 H 1.09004 * 110.32109 * 36.99809 * 13 12 10 15 15 C 1.52530 * 110.24558 * 275.00048 * 13 12 10 16 16 C 1.46238 * 114.27732 * 151.62258 * 15 13 12 17 17 N 1.50164 * 107.53871 * 58.39764 * 16 15 13 18 18 C 1.36942 * 120.54040 * 109.60662 * 17 16 15 19 19 H 1.07997 * 120.00288 * 156.46708 * 18 17 16 20 20 C 1.38817 * 119.99812 * 336.48047 * 18 17 16 21 21 N 1.31623 * 119.99790 * 344.44907 * 20 18 17 22 22 Si 1.86800 * 119.99936 * 164.44955 * 20 18 17 23 23 H 1.48498 * 109.47184 * 89.99837 * 22 20 18 24 24 H 1.48500 * 109.47002 * 209.99611 * 22 20 18 25 25 H 1.48497 * 109.47170 * 329.99976 * 22 20 18 26 26 C 1.43434 * 118.92827 * 289.59293 * 17 16 15 27 27 C 1.54904 * 116.08058 * 91.56377 * 26 17 16 28 28 C 1.52992 * 109.35908 * 78.84760 * 27 26 17 29 29 C 1.52999 * 109.35987 * 198.57841 * 27 26 17 30 30 C 1.50126 * 110.25394 * 159.01110 * 13 12 10 31 31 H 1.09002 * 109.46956 * 290.65073 * 1 2 3 32 32 H 1.08996 * 109.47035 * 50.65494 * 1 2 3 33 33 H 1.08999 * 109.46622 * 170.65008 * 1 2 3 34 34 H 1.09005 * 109.51943 * 177.85812 * 5 4 2 35 35 H 1.09000 * 109.52744 * 297.98766 * 5 4 2 36 36 H 1.09002 * 109.52717 * 64.59004 * 6 5 4 37 37 H 1.08997 * 109.52308 * 184.78105 * 6 5 4 38 38 H 0.97008 * 119.99908 * 5.03973 * 12 10 8 39 39 H 1.08990 * 108.52727 * 30.37516 * 15 13 12 40 40 H 1.09007 * 108.51950 * 272.85502 * 15 13 12 41 41 H 1.09001 * 109.84822 * 177.90784 * 16 15 13 42 42 H 1.09001 * 109.84445 * 298.82659 * 16 15 13 43 43 H 0.97002 * 119.99312 * 179.97438 * 21 20 18 44 44 H 1.08988 * 108.16349 * 213.28374 * 26 17 16 45 45 H 1.09003 * 108.15400 * 330.06091 * 26 17 16 46 46 H 1.09005 * 109.46857 * 59.99850 * 28 27 26 47 47 H 1.09004 * 109.47687 * 179.97438 * 28 27 26 48 48 H 1.09001 * 109.47341 * 300.00607 * 28 27 26 49 49 H 1.08996 * 109.47410 * 59.99759 * 29 27 26 50 50 H 1.08999 * 109.47074 * 180.02562 * 29 27 26 51 51 H 1.09000 * 109.46523 * 299.99718 * 29 27 26 52 52 H 1.09000 * 109.20825 * 96.31489 * 30 13 12 53 53 H 1.08998 * 109.20637 * 337.00230 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0082 -0.6777 -1.1658 5 6 3.4345 -0.7712 -1.2290 6 6 3.9463 -1.4963 0.0189 7 8 3.4682 -0.8186 1.1848 8 6 2.0419 -0.7251 1.2481 9 1 1.7516 -0.1671 2.1383 10 6 1.4484 -2.1091 1.3054 11 8 2.1554 -3.0796 1.1349 12 7 0.1319 -2.2684 1.5459 13 6 -0.4251 -3.6132 1.7116 14 1 0.2795 -4.2518 2.2445 15 6 -0.7602 -4.2170 0.3516 16 6 -0.6896 -5.6770 0.3080 17 7 -1.6458 -6.2072 1.3373 18 6 -2.7989 -6.8396 0.9556 19 1 -3.2816 -7.5341 1.6271 20 6 -3.3471 -6.5881 -0.2947 21 7 -2.9543 -5.5397 -0.9867 22 14 -4.6424 -7.7376 -0.9949 23 1 -5.9914 -7.2720 -0.5844 24 1 -4.5504 -7.7429 -2.4770 25 1 -4.4152 -9.1118 -0.4798 26 6 -1.3317 -6.0408 2.7269 27 6 -1.8847 -4.7608 3.4016 28 6 -3.3652 -4.9606 3.7315 29 6 -1.1090 -4.4925 4.6928 30 6 -1.7296 -3.5479 2.4517 31 1 -0.3633 0.3624 0.9617 32 1 -0.3633 0.6515 -0.7947 33 1 -0.3632 -1.0140 -0.1670 34 1 3.7238 -1.3298 -2.1193 35 1 3.8637 0.2298 -1.2717 36 1 3.5812 -2.5234 0.0190 37 1 5.0363 -1.4963 0.0189 38 1 -0.4469 -1.4925 1.6095 39 1 -0.0664 -3.8146 -0.3864 40 1 -1.7695 -3.9108 0.0760 41 1 -0.9770 -6.0320 -0.6817 42 1 0.3237 -6.0055 0.5389 43 1 -3.3371 -5.3643 -1.8606 44 1 -1.7181 -6.9042 3.2683 45 1 -0.2467 -6.0348 2.8315 46 1 -3.4753 -5.8067 4.4099 47 1 -3.7562 -4.0609 4.2069 48 1 -3.9188 -5.1567 2.8133 49 1 -0.0531 -4.3547 4.4604 50 1 -1.4970 -3.5923 5.1694 51 1 -1.2248 -5.3397 5.3688 52 1 -2.5497 -3.5476 1.7337 53 1 -1.7649 -2.6282 3.0356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089409024.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:55 Heat of formation + Delta-G solvation = -106.817223 kcal Electronic energy + Delta-G solvation = -33494.974207 eV Core-core repulsion = 29367.380006 eV Total energy + Delta-G solvation = -4127.594201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.10898 -40.57823 -39.11390 -37.24880 -36.24585 -35.95911 -34.47004 -33.06924 -32.03664 -30.01176 -29.21112 -28.03744 -27.99348 -27.29472 -25.17565 -24.29780 -23.85535 -22.68754 -21.49688 -21.39530 -19.43632 -18.60714 -18.29304 -18.02936 -17.76120 -17.28977 -16.89207 -16.56462 -16.33485 -15.97578 -15.68962 -15.49319 -15.23132 -15.11058 -14.86238 -14.54075 -14.19046 -13.89021 -13.82334 -13.47406 -13.37727 -13.23026 -13.19528 -13.04316 -12.98546 -12.89051 -12.67436 -12.62157 -12.50932 -12.37632 -12.26847 -12.11430 -11.89322 -11.60207 -11.52072 -11.45613 -11.36763 -11.12614 -11.00060 -10.74369 -10.47159 -9.92530 -9.79088 -8.60320 -7.76610 -5.19245 1.47494 1.51137 1.54559 1.58155 2.13668 2.56295 2.62330 2.69501 3.36444 3.40919 3.57117 3.66969 3.88694 3.96437 3.98607 4.07020 4.08776 4.16380 4.24097 4.34618 4.41088 4.45741 4.50018 4.54805 4.63782 4.75361 4.79576 4.81580 4.85097 4.90158 4.92302 4.95639 5.02493 5.09842 5.14104 5.21769 5.24369 5.28026 5.34597 5.36007 5.48746 5.54114 5.66980 5.70402 5.74959 5.80078 5.81629 6.06042 6.10336 6.46071 6.58926 7.20531 7.27458 7.93373 8.46072 9.27353 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.003899 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.120600 B = 7180.100288 C = 8151.746906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.064 3.936 3 H 0.107 0.893 4 O -0.400 6.400 5 C 0.027 3.973 6 C 0.000 4.000 7 O -0.364 6.364 8 C 0.042 3.958 9 H 0.170 0.830 10 C 0.491 3.509 11 O -0.572 6.572 12 N -0.704 5.704 13 C 0.162 3.838 14 H 0.063 0.937 15 C -0.106 4.106 16 C 0.173 3.827 17 N -0.595 5.595 18 C -0.244 4.244 19 H 0.063 0.937 20 C -0.042 4.042 21 N -0.919 5.919 22 Si 0.954 3.046 23 H -0.287 1.287 24 H -0.298 1.298 25 H -0.279 1.279 26 C 0.163 3.837 27 C -0.086 4.086 28 C -0.120 4.120 29 C -0.127 4.127 30 C -0.091 4.091 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.411 0.589 39 H 0.010 0.990 40 H 0.076 0.924 41 H 0.064 0.936 42 H -0.003 1.003 43 H 0.245 0.755 44 H 0.029 0.971 45 H 0.024 0.976 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.034 0.966 49 H 0.043 0.957 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.049 0.951 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.956 15.790 6.747 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 H 0.125 0.875 4 O -0.319 6.319 5 C -0.050 4.050 6 C -0.077 4.077 7 O -0.282 6.282 8 C -0.019 4.019 9 H 0.187 0.813 10 C 0.278 3.722 11 O -0.451 6.451 12 N -0.360 5.360 13 C 0.058 3.942 14 H 0.081 0.919 15 C -0.146 4.146 16 C 0.049 3.951 17 N -0.317 5.317 18 C -0.374 4.374 19 H 0.081 0.919 20 C -0.238 4.238 21 N -0.565 5.565 22 Si 0.784 3.216 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.205 1.205 26 C 0.035 3.965 27 C -0.090 4.090 28 C -0.178 4.178 29 C -0.184 4.184 30 C -0.129 4.129 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.142 0.858 38 H 0.251 0.749 39 H 0.029 0.971 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.015 0.985 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.068 0.932 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.409 15.119 6.480 18.474 hybrid contribution -0.891 -0.774 -1.008 1.552 sum 7.518 14.345 5.472 17.095 Atomic orbital electron populations 1.22184 0.91332 1.03546 1.05331 1.22857 0.96932 0.96241 0.83324 0.87530 1.88152 1.22135 1.78950 1.42704 1.23364 0.80760 1.01763 0.99071 1.23692 1.01333 0.97687 0.84946 1.88093 1.18380 1.77414 1.44265 1.23183 0.82959 0.92503 1.03302 0.81317 1.21776 0.82576 0.92402 0.75415 1.90594 1.60978 1.43243 1.50305 1.46501 1.08395 1.09436 1.71621 1.20075 0.95004 0.82944 0.96177 0.91897 1.20998 1.01196 0.97433 0.94989 1.19934 0.88128 0.92795 0.94242 1.44250 1.20733 1.66369 1.00326 1.19318 1.00979 1.16767 1.00380 0.91916 1.25472 1.00433 0.98168 0.99700 1.70095 1.46218 1.26924 1.13310 0.85479 0.79707 0.79452 0.76956 1.21356 1.22500 1.20475 1.20611 0.96022 0.94957 0.84877 1.21847 0.96340 0.95947 0.94844 1.21639 0.95124 1.00754 1.00263 1.21756 0.98953 1.01971 0.95743 1.21629 0.95128 0.98252 0.97912 0.86966 0.89874 0.92834 0.87217 0.90068 0.91564 0.85845 0.74897 0.97128 0.90579 0.91824 0.98455 0.94592 0.95282 0.95780 0.93095 0.92173 0.94678 0.93825 0.91183 0.92300 0.93188 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 7.95 71.99 0.57 -2.38 16 2 C 0.06 1.29 3.15 30.65 0.10 1.39 16 3 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 4 O -0.40 -10.80 10.23 -136.01 -1.39 -12.19 16 5 C 0.03 0.58 7.05 72.03 0.51 1.09 16 6 C 0.00 -0.01 6.60 72.03 0.48 0.47 16 7 O -0.36 -9.46 10.53 -122.95 -1.30 -10.75 16 8 C 0.04 0.95 3.38 29.90 0.10 1.05 16 9 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 10 C 0.49 15.43 6.28 87.66 0.55 15.98 16 11 O -0.57 -23.36 13.51 15.83 0.21 -23.14 16 12 N -0.70 -20.48 3.77 -447.72 -1.69 -22.16 16 13 C 0.16 5.95 2.07 43.91 0.09 6.04 16 14 H 0.06 2.60 5.34 -2.38 -0.01 2.58 16 15 C -0.11 -4.84 4.71 28.36 0.13 -4.71 16 16 C 0.17 8.78 5.24 83.58 0.44 9.22 16 17 N -0.60 -29.38 2.61 -707.84 -1.84 -31.23 16 18 C -0.24 -13.01 8.97 84.03 0.75 -12.25 16 19 H 0.06 3.33 7.86 -2.91 -0.02 3.30 16 20 C -0.04 -2.29 5.02 84.86 0.43 -1.86 16 21 N -0.92 -51.41 9.22 21.65 0.20 -51.21 16 22 Si 0.95 44.60 29.58 68.60 2.03 46.63 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 26 C 0.16 6.79 4.01 87.60 0.35 7.14 16 27 C -0.09 -2.90 0.77 -50.90 -0.04 -2.94 16 28 C -0.12 -4.00 8.29 71.98 0.60 -3.40 16 29 C -0.13 -3.37 8.20 71.98 0.59 -2.78 16 30 C -0.09 -3.08 4.14 30.30 0.13 -2.95 16 31 H 0.11 1.12 7.50 -2.39 -0.02 1.11 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.34 6.12 -2.39 -0.01 1.32 16 34 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 2.22 5.32 -2.39 -0.01 2.21 16 37 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.41 9.01 5.68 -92.70 -0.53 8.48 16 39 H 0.01 0.49 7.90 -2.39 -0.02 0.47 16 40 H 0.08 3.84 5.37 -2.38 -0.01 3.83 16 41 H 0.06 3.63 5.92 -2.39 -0.01 3.62 16 42 H 0.00 -0.13 8.13 -2.39 -0.02 -0.15 16 43 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 44 H 0.03 1.21 7.83 -2.39 -0.02 1.19 16 45 H 0.02 1.00 6.66 -2.39 -0.02 0.99 16 46 H 0.05 1.58 8.13 -2.38 -0.02 1.56 16 47 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.03 1.42 7.45 -2.39 -0.02 1.40 16 49 H 0.04 1.21 7.55 -2.39 -0.02 1.19 16 50 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 52 H 0.05 2.04 6.66 -2.39 -0.02 2.03 16 53 H 0.08 2.04 7.63 -2.39 -0.02 2.02 16 Total: -1.00 -69.67 385.21 2.37 -67.30 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.38 Total: 27.67 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 5.77 Total: 9.09 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -3.33 Total: -104.60 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -2.47 Total: -46.08 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -69.67 2.37 -67.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089409024.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.518 kcal (2) G-P(sol) polarization free energy of solvation -69.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds