Wall clock time and date at job start Wed Apr 1 2020 00:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.52701 * 2 1 4 4 O 1.43074 * 109.57784 * 239.83224 * 2 1 3 5 5 C 1.43084 * 113.59127 * 182.11374 * 4 2 1 6 6 C 1.53145 * 109.14651 * 57.95255 * 5 4 2 7 7 O 1.43074 * 109.15423 * 304.68510 * 6 5 4 8 8 C 1.43075 * 113.59130 * 57.95868 * 7 6 5 9 9 H 1.09000 * 109.52422 * 182.14706 * 8 7 6 10 10 C 1.50700 * 109.52700 * 61.94359 * 8 7 6 11 11 O 1.21281 * 119.99768 * 351.98911 * 10 8 7 12 12 N 1.34772 * 119.99930 * 171.98180 * 10 8 7 13 13 C 1.46501 * 119.99876 * 184.73997 * 12 10 8 14 14 C 1.53002 * 109.46908 * 174.76764 * 13 12 10 15 15 H 1.08998 * 109.58517 * 55.02349 * 14 13 12 16 16 C 1.53184 * 109.58806 * 294.73542 * 14 13 12 17 17 C 1.53046 * 109.31411 * 185.57753 * 16 14 13 18 18 C 1.53043 * 109.53745 * 61.36501 * 17 16 14 19 19 C 1.53000 * 109.49583 * 58.58717 * 18 17 16 20 20 C 1.52999 * 109.49844 * 178.65048 * 18 17 16 21 21 C 1.53193 * 109.31275 * 298.63660 * 18 17 16 22 22 N 1.46929 * 108.77376 * 54.63625 * 21 18 17 23 23 C 1.36933 * 120.63051 * 126.39585 * 22 21 18 24 24 H 1.08008 * 119.99686 * 211.35225 * 23 22 21 25 25 C 1.38804 * 120.00191 * 31.34576 * 23 22 21 26 26 N 1.31621 * 120.00225 * 11.46749 * 25 23 22 27 27 Si 1.86806 * 119.99876 * 191.46514 * 25 23 22 28 28 H 1.48495 * 109.47106 * 65.00078 * 27 25 23 29 29 H 1.48507 * 109.46916 * 184.99778 * 27 25 23 30 30 H 1.48498 * 109.47097 * 304.99600 * 27 25 23 31 31 H 1.09005 * 109.47685 * 291.95041 * 1 2 3 32 32 H 1.09010 * 109.47129 * 51.94973 * 1 2 3 33 33 H 1.08998 * 109.47222 * 171.95208 * 1 2 3 34 34 H 1.08998 * 109.52052 * 298.05297 * 5 4 2 35 35 H 1.08996 * 109.57780 * 177.88626 * 5 4 2 36 36 H 1.09003 * 109.51674 * 184.78414 * 6 5 4 37 37 H 1.08995 * 109.52460 * 64.59622 * 6 5 4 38 38 H 0.97001 * 120.00015 * 4.74465 * 12 10 8 39 39 H 1.09001 * 109.47371 * 294.76487 * 13 12 10 40 40 H 1.08997 * 109.47209 * 54.76920 * 13 12 10 41 41 H 1.08996 * 109.50314 * 305.52795 * 16 14 13 42 42 H 1.09004 * 109.49953 * 65.59856 * 16 14 13 43 43 H 1.08997 * 109.45949 * 181.38937 * 17 16 14 44 44 H 1.09005 * 109.45993 * 301.36225 * 17 16 14 45 45 H 1.09006 * 109.47120 * 59.99687 * 19 18 17 46 46 H 1.08992 * 109.47210 * 179.97438 * 19 18 17 47 47 H 1.09005 * 109.47015 * 300.00085 * 19 18 17 48 48 H 1.09003 * 109.46535 * 60.00184 * 20 18 17 49 49 H 1.08995 * 109.46773 * 179.97438 * 20 18 17 50 50 H 1.08999 * 109.46921 * 300.00123 * 20 18 17 51 51 H 1.09004 * 109.58676 * 174.41783 * 21 18 17 52 52 H 1.09000 * 109.58766 * 294.84988 * 21 18 17 53 53 H 0.97001 * 119.99879 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 8 2.0094 -0.6774 -1.1654 5 6 3.4359 -0.7697 -1.2280 6 6 3.9476 -1.4942 0.0205 7 8 3.4681 -0.8168 1.1859 8 6 2.0417 -0.7245 1.2485 9 1 1.7515 -0.1660 2.1384 10 6 1.4494 -2.1091 1.3055 11 8 2.1597 -3.0794 1.1480 12 7 0.1305 -2.2690 1.5317 13 6 -0.4276 -3.6141 1.6906 14 6 -1.9078 -3.5113 2.0640 15 1 -2.4312 -2.9101 1.3206 16 6 -2.0455 -2.8576 3.4426 17 6 -3.5146 -2.8838 3.8708 18 6 -3.9919 -4.3342 3.9741 19 6 -3.1238 -5.0866 4.9846 20 6 -5.4507 -4.3602 4.4346 21 6 -3.8763 -5.0046 2.6015 22 7 -2.4969 -4.8562 2.1174 23 6 -1.7743 -5.9506 1.7234 24 1 -0.7021 -5.9648 1.8528 25 6 -2.4197 -7.0416 1.1579 26 7 -3.6803 -6.9437 0.7924 27 14 -1.4990 -8.6489 0.9156 28 1 -1.1333 -9.2142 2.2391 29 1 -2.3658 -9.6111 0.1887 30 1 -0.2663 -8.3991 0.1261 31 1 -0.3635 0.3841 0.9532 32 1 -0.3634 0.6335 -0.8093 33 1 -0.3633 -1.0175 -0.1439 34 1 3.8642 0.2317 -1.2693 35 1 3.7271 -1.3275 -2.1179 36 1 5.0376 -1.4932 0.0210 37 1 3.5833 -2.5215 0.0205 38 1 -0.4492 -1.4934 1.5893 39 1 -0.3265 -4.1625 0.7541 40 1 0.1104 -4.1399 2.4794 41 1 -1.4455 -3.4076 4.1676 42 1 -1.6992 -1.8253 3.3920 43 1 -3.6189 -2.3972 4.8405 44 1 -4.1175 -2.3551 3.1324 45 1 -3.2041 -4.6075 5.9605 46 1 -3.4643 -6.1194 5.0582 47 1 -2.0848 -5.0688 4.6555 48 1 -6.0688 -3.8250 3.7137 49 1 -5.7902 -5.3934 4.5076 50 1 -5.5323 -3.8808 5.4101 51 1 -4.1204 -6.0632 2.6901 52 1 -4.5623 -4.5264 1.9023 53 1 -4.1314 -7.7063 0.3975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089655104.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:43 Heat of formation + Delta-G solvation = -120.920200 kcal Electronic energy + Delta-G solvation = -32677.743055 eV Core-core repulsion = 28549.537303 eV Total energy + Delta-G solvation = -4128.205752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.06381 -40.38252 -39.40182 -37.34284 -36.46683 -35.57118 -34.48455 -33.12059 -31.70023 -30.04227 -29.31320 -28.02251 -27.88915 -27.27925 -25.17127 -24.30770 -23.87088 -22.95541 -21.71683 -21.23798 -19.43672 -18.61480 -18.24507 -18.01045 -17.67389 -17.30181 -16.89692 -16.48207 -16.25340 -15.88875 -15.72452 -15.66674 -15.30236 -14.95044 -14.86406 -14.62124 -14.53203 -14.30698 -13.89656 -13.74467 -13.39146 -13.23585 -13.14149 -13.00667 -12.96277 -12.89511 -12.77981 -12.64990 -12.55814 -12.47409 -12.24691 -12.11885 -12.02326 -11.87639 -11.54637 -11.51247 -11.26630 -10.97074 -10.89108 -10.81169 -10.50213 -10.10089 -9.87805 -8.56094 -7.84917 -5.33417 1.42130 1.42810 1.48584 1.49030 2.03729 2.49407 2.60541 2.68581 3.29720 3.39603 3.56817 3.75298 3.88804 3.95190 3.97791 4.03966 4.14462 4.16489 4.23397 4.26185 4.34751 4.37028 4.41441 4.49696 4.65194 4.68208 4.76946 4.82068 4.85909 4.88516 4.92176 4.96529 5.03450 5.05551 5.12637 5.14960 5.15997 5.24055 5.27707 5.38095 5.40721 5.52055 5.56596 5.62409 5.67053 5.77591 5.81919 5.89466 6.04535 6.43182 6.50542 7.18777 7.19810 7.89077 8.39264 9.19079 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.003735 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.839752 B = 7494.194172 C = 8912.255983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.064 3.936 3 H 0.110 0.890 4 O -0.400 6.400 5 C 0.028 3.972 6 C -0.002 4.002 7 O -0.365 6.365 8 C 0.043 3.957 9 H 0.172 0.828 10 C 0.489 3.511 11 O -0.577 6.577 12 N -0.704 5.704 13 C 0.146 3.854 14 C 0.166 3.834 15 H 0.029 0.971 16 C -0.124 4.124 17 C -0.092 4.092 18 C -0.092 4.092 19 C -0.118 4.118 20 C -0.128 4.128 21 C 0.198 3.802 22 N -0.596 5.596 23 C -0.249 4.249 24 H 0.058 0.942 25 C -0.039 4.039 26 N -0.928 5.928 27 Si 0.948 3.052 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.415 0.585 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.043 0.957 48 H 0.051 0.949 49 H 0.039 0.961 50 H 0.071 0.929 51 H 0.049 0.951 52 H -0.009 1.009 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.291 19.724 3.741 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.006 3.994 3 H 0.127 0.873 4 O -0.319 6.319 5 C -0.049 4.049 6 C -0.078 4.078 7 O -0.282 6.282 8 C -0.018 4.018 9 H 0.189 0.811 10 C 0.276 3.724 11 O -0.457 6.457 12 N -0.361 5.361 13 C 0.021 3.979 14 C 0.060 3.940 15 H 0.046 0.954 16 C -0.163 4.163 17 C -0.130 4.130 18 C -0.094 4.094 19 C -0.175 4.175 20 C -0.186 4.186 21 C 0.072 3.928 22 N -0.319 5.319 23 C -0.380 4.380 24 H 0.075 0.925 25 C -0.235 4.235 26 N -0.574 5.574 27 Si 0.778 3.222 28 H -0.206 1.206 29 H -0.217 1.217 30 H -0.211 1.211 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.082 0.918 38 H 0.255 0.745 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.090 0.910 51 H 0.068 0.932 52 H 0.009 0.991 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.703 18.909 3.558 20.375 hybrid contribution 0.152 -1.623 -0.675 1.764 sum 6.855 17.287 2.882 18.818 Atomic orbital electron populations 1.22222 0.91113 1.03584 1.05672 1.22885 0.97105 0.96322 0.83101 0.87287 1.88132 1.22098 1.78986 1.42717 1.23363 0.80742 1.01839 0.98938 1.23703 1.01396 0.97608 0.85095 1.88102 1.18395 1.77345 1.44343 1.23208 0.82909 0.92025 1.03648 0.81057 1.21904 0.82392 0.92659 0.75403 1.90609 1.60857 1.43511 1.50722 1.46308 1.08351 1.09584 1.71876 1.21077 0.94162 0.83048 0.99574 1.20692 0.90191 0.87374 0.95793 0.95383 1.22049 0.97427 1.00388 0.96394 1.21420 0.95380 0.94818 1.01377 1.21156 0.95535 0.96424 0.96279 1.21625 0.99601 0.98451 0.97807 1.21708 0.94733 1.00985 1.01190 1.20613 0.83668 0.98543 0.89947 1.44079 1.12543 1.00897 1.74420 1.19204 0.91490 0.94715 1.32547 0.92463 1.25650 0.97189 1.01987 0.98687 1.70108 1.11509 1.30264 1.45545 0.85635 0.77870 0.81002 0.77736 1.20646 1.21714 1.21101 0.86769 0.89556 0.92760 0.89951 0.87044 0.85844 0.91783 0.74450 0.94701 0.93460 0.92624 0.89608 0.90386 0.92429 0.91859 0.95384 0.93781 0.92974 0.94173 0.90962 0.93244 0.99054 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 7.96 71.98 0.57 -1.99 16 2 C 0.06 1.16 3.15 30.64 0.10 1.26 16 3 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 4 O -0.40 -9.97 10.23 -136.01 -1.39 -11.36 16 5 C 0.03 0.56 7.05 72.03 0.51 1.07 16 6 C 0.00 -0.04 6.60 72.03 0.48 0.43 16 7 O -0.36 -9.24 10.53 -122.94 -1.29 -10.54 16 8 C 0.04 0.94 3.39 29.90 0.10 1.04 16 9 H 0.17 2.30 8.14 -2.39 -0.02 2.29 16 10 C 0.49 15.24 6.44 87.66 0.56 15.81 16 11 O -0.58 -23.88 13.76 15.83 0.22 -23.66 16 12 N -0.70 -20.22 4.01 -463.06 -1.86 -22.07 16 13 C 0.15 5.66 3.84 86.38 0.33 5.99 16 14 C 0.17 6.28 2.98 44.97 0.13 6.42 16 15 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 16 C -0.12 -3.60 4.84 30.67 0.15 -3.46 16 17 C -0.09 -2.59 4.71 30.62 0.14 -2.45 16 18 C -0.09 -3.18 0.77 -52.10 -0.04 -3.22 16 19 C -0.12 -4.08 7.98 71.98 0.57 -3.50 16 20 C -0.13 -3.77 8.48 71.98 0.61 -3.16 16 21 C 0.20 9.13 3.94 86.36 0.34 9.47 16 22 N -0.60 -28.45 2.42 -675.22 -1.63 -30.09 16 23 C -0.25 -13.58 8.47 84.03 0.71 -12.87 16 24 H 0.06 3.19 6.34 -2.91 -0.02 3.17 16 25 C -0.04 -2.21 5.03 84.86 0.43 -1.78 16 26 N -0.93 -54.75 11.10 21.65 0.24 -54.51 16 27 Si 0.95 46.70 29.57 68.60 2.03 48.73 16 28 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 29 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 30 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 31 H 0.11 0.88 7.58 -2.38 -0.02 0.86 16 32 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.05 1.18 5.97 -2.39 -0.01 1.17 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 2.11 5.34 -2.39 -0.01 2.09 16 38 H 0.41 8.59 5.08 -92.71 -0.47 8.12 16 39 H 0.03 1.65 7.37 -2.39 -0.02 1.64 16 40 H 0.05 2.03 7.69 -2.39 -0.02 2.01 16 41 H 0.06 1.77 6.34 -2.39 -0.02 1.76 16 42 H 0.09 1.82 7.48 -2.39 -0.02 1.80 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 46 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 47 H 0.04 1.70 5.97 -2.38 -0.01 1.69 16 48 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.05 2.67 6.13 -2.38 -0.01 2.65 16 52 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 53 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -74.62 390.31 2.43 -72.18 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.43 Total: 22.28 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 5.70 Total: 9.05 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -3.25 Total: -106.67 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.47 Total: -45.56 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.62 2.43 -72.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089655104.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.737 kcal (2) G-P(sol) polarization free energy of solvation -74.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds