Wall clock time and date at job start Wed Apr 1 2020 00:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.57540 * 2 1 4 4 O 1.43065 * 109.52667 * 239.83055 * 2 1 3 5 5 C 1.43075 * 113.59652 * 182.14992 * 4 2 1 6 6 C 1.53145 * 109.15076 * 57.94875 * 5 4 2 7 7 O 1.43079 * 109.15069 * 304.69294 * 6 5 4 8 8 C 1.43068 * 113.59237 * 57.95114 * 7 6 5 9 9 H 1.09002 * 109.52514 * 182.07967 * 8 7 6 10 10 C 1.50703 * 109.52475 * 61.95134 * 8 7 6 11 11 O 1.21280 * 119.99762 * 356.20051 * 10 8 7 12 12 N 1.34774 * 119.99817 * 176.20414 * 10 8 7 13 13 C 1.46498 * 119.99766 * 175.72130 * 12 10 8 14 14 C 1.53005 * 109.47277 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.69937 * 61.53265 * 14 13 12 16 16 C 1.53625 * 109.66628 * 182.12793 * 14 13 12 17 17 C 1.53036 * 109.24187 * 174.55175 * 16 14 13 18 18 C 1.53041 * 109.53496 * 298.50512 * 17 16 14 19 19 C 1.52996 * 109.49893 * 301.41519 * 18 17 16 20 20 C 1.52997 * 109.49714 * 181.31914 * 18 17 16 21 21 C 1.53192 * 109.31207 * 61.36801 * 18 17 16 22 22 N 1.46923 * 109.58360 * 301.17653 * 14 13 12 23 23 C 1.36938 * 120.63457 * 6.62458 * 22 14 13 24 24 H 1.08004 * 120.00067 * 324.37081 * 23 22 14 25 25 C 1.38809 * 119.99976 * 144.63251 * 23 22 14 26 26 N 1.31620 * 120.00467 * 348.98195 * 25 23 22 27 27 Si 1.86804 * 119.99907 * 168.97048 * 25 23 22 28 28 H 1.48501 * 109.46886 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46732 * 120.00250 * 27 25 23 30 30 H 1.48495 * 109.47358 * 240.00478 * 27 25 23 31 31 H 1.08998 * 109.47329 * 291.02581 * 1 2 3 32 32 H 1.09004 * 109.46987 * 51.02100 * 1 2 3 33 33 H 1.08998 * 109.47426 * 171.02129 * 1 2 3 34 34 H 1.09007 * 109.51969 * 298.05261 * 5 4 2 35 35 H 1.08996 * 109.57972 * 177.88545 * 5 4 2 36 36 H 1.09001 * 109.52429 * 184.79001 * 6 5 4 37 37 H 1.09000 * 109.57767 * 64.62723 * 6 5 4 38 38 H 0.96997 * 120.00405 * 355.71826 * 12 10 8 39 39 H 1.09003 * 109.47600 * 59.99788 * 13 12 10 40 40 H 1.09001 * 109.47252 * 299.99658 * 13 12 10 41 41 H 1.08998 * 109.63582 * 54.55246 * 16 14 13 42 42 H 1.09003 * 109.42468 * 294.41670 * 16 14 13 43 43 H 1.09005 * 109.46092 * 178.49174 * 17 16 14 44 44 H 1.08993 * 109.45500 * 58.51970 * 17 16 14 45 45 H 1.08999 * 109.47596 * 179.83637 * 19 18 17 46 46 H 1.09000 * 109.47351 * 299.83805 * 19 18 17 47 47 H 1.08999 * 109.47010 * 59.83775 * 19 18 17 48 48 H 1.08999 * 109.47201 * 300.16148 * 20 18 17 49 49 H 1.08998 * 109.47161 * 60.16401 * 20 18 17 50 50 H 1.09002 * 109.47234 * 180.16299 * 20 18 17 51 51 H 1.09004 * 109.58686 * 185.57385 * 21 18 17 52 52 H 1.09002 * 109.58528 * 65.15323 * 21 18 17 53 53 H 0.96996 * 120.00159 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 8 2.0082 -0.6776 -1.1657 5 6 3.4345 -0.7713 -1.2291 6 6 3.9462 -1.4965 0.0190 7 8 3.4680 -0.8187 1.1848 8 6 2.0418 -0.7251 1.2481 9 1 1.7524 -0.1675 2.1388 10 6 1.4482 -2.1092 1.3054 11 8 2.1683 -3.0816 1.2239 12 7 0.1172 -2.2662 1.4471 13 6 -0.4703 -3.6077 1.4087 14 6 -1.9860 -3.5061 1.5917 15 1 -2.4163 -2.9245 0.7764 16 6 -2.6005 -4.9141 1.6054 17 6 -4.0937 -4.8095 1.9241 18 6 -4.2787 -4.1901 3.3113 19 6 -3.5653 -5.0520 4.3548 20 6 -5.7706 -4.1162 3.6426 21 6 -3.6826 -2.7789 3.3196 22 7 -2.2846 -2.8535 2.8737 23 6 -1.2799 -2.3198 3.6357 24 1 -0.3148 -2.8034 3.6725 25 6 -1.5033 -1.1602 4.3653 26 7 -2.5957 -0.4548 4.1619 27 14 -0.2536 -0.6010 5.6363 28 1 0.8787 -1.5611 5.6728 29 1 0.2524 0.7470 5.2731 30 1 -0.8983 -0.5443 6.9728 31 1 -0.3634 0.3687 0.9592 32 1 -0.3633 0.6465 -0.7989 33 1 -0.3634 -1.0150 -0.1604 34 1 3.8638 0.2298 -1.2704 35 1 3.7247 -1.3293 -2.1193 36 1 5.0363 -1.4965 0.0190 37 1 3.5820 -2.5238 0.0197 38 1 -0.4518 -1.4910 1.5745 39 1 -0.0469 -4.2129 2.2104 40 1 -0.2511 -4.0730 0.4477 41 1 -2.1080 -5.5213 2.3648 42 1 -2.4688 -5.3767 0.6273 43 1 -4.5389 -5.8044 1.9084 44 1 -4.5810 -4.1817 1.1782 45 1 -3.6949 -4.6090 5.3422 46 1 -3.9897 -6.0560 4.3485 47 1 -2.5029 -5.1053 4.1171 48 1 -6.2782 -3.5032 2.8980 49 1 -6.1943 -5.1205 3.6366 50 1 -5.9020 -3.6723 4.6295 51 1 -3.7227 -2.3713 4.3297 52 1 -4.2486 -2.1392 2.6425 53 1 -2.7519 0.3553 4.6720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089655105.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:47 Heat of formation + Delta-G solvation = -114.382904 kcal Electronic energy + Delta-G solvation = -33563.289936 eV Core-core repulsion = 29435.367662 eV Total energy + Delta-G solvation = -4127.922274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.01224 -40.36310 -39.29893 -37.34511 -36.48281 -35.13718 -34.48913 -33.07476 -31.74395 -30.01533 -29.22370 -28.00638 -27.81585 -27.30125 -25.05710 -24.29932 -23.86780 -22.77190 -21.71923 -20.98985 -19.45752 -18.50636 -18.16251 -18.04831 -17.52784 -17.34723 -17.03185 -16.36438 -16.24181 -15.96222 -15.65450 -15.47615 -15.18721 -15.09185 -14.71577 -14.62596 -14.52308 -14.02074 -13.82678 -13.73628 -13.38201 -13.26217 -13.12116 -12.99427 -12.96352 -12.81922 -12.75904 -12.57508 -12.51904 -12.47262 -12.21270 -12.10961 -12.00242 -11.86046 -11.60262 -11.50714 -11.24350 -10.99368 -10.86611 -10.77299 -10.48045 -9.91838 -9.72858 -8.43616 -7.79372 -5.30729 1.37390 1.46619 1.52663 1.59227 2.25947 2.49235 2.62383 2.66505 3.33806 3.38987 3.60535 3.76037 3.87579 3.97349 4.02366 4.05894 4.16975 4.20768 4.23755 4.33552 4.36359 4.41288 4.44580 4.53613 4.64170 4.68797 4.75512 4.81272 4.84935 4.88141 4.94280 4.95477 4.99335 5.07507 5.11407 5.15413 5.18110 5.22153 5.27573 5.41368 5.50645 5.55881 5.61119 5.67364 5.75159 5.80868 5.83315 5.90269 6.00482 6.50598 6.69982 7.23936 7.30604 7.91438 8.47715 9.22839 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004461 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.476141 B = 6275.008270 C = 7273.610103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.075 3.925 3 H 0.099 0.901 4 O -0.388 6.388 5 C 0.027 3.973 6 C -0.001 4.001 7 O -0.370 6.370 8 C 0.037 3.963 9 H 0.134 0.866 10 C 0.489 3.511 11 O -0.583 6.583 12 N -0.685 5.685 13 C 0.138 3.862 14 C 0.162 3.838 15 H 0.033 0.967 16 C -0.125 4.125 17 C -0.090 4.090 18 C -0.092 4.092 19 C -0.117 4.117 20 C -0.129 4.129 21 C 0.200 3.800 22 N -0.593 5.593 23 C -0.231 4.231 24 H 0.051 0.949 25 C -0.020 4.020 26 N -0.915 5.915 27 Si 0.922 3.078 28 H -0.286 1.286 29 H -0.282 1.282 30 H -0.296 1.296 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.417 0.583 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.067 0.933 50 H 0.041 0.959 51 H 0.043 0.957 52 H -0.002 1.002 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -1.871 -9.783 10.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.117 0.883 4 O -0.308 6.308 5 C -0.050 4.050 6 C -0.077 4.077 7 O -0.288 6.288 8 C -0.024 4.024 9 H 0.152 0.848 10 C 0.276 3.724 11 O -0.465 6.465 12 N -0.339 5.339 13 C 0.014 3.986 14 C 0.056 3.944 15 H 0.050 0.950 16 C -0.164 4.164 17 C -0.128 4.128 18 C -0.094 4.094 19 C -0.174 4.174 20 C -0.186 4.186 21 C 0.074 3.926 22 N -0.317 5.317 23 C -0.362 4.362 24 H 0.069 0.931 25 C -0.218 4.218 26 N -0.561 5.561 27 Si 0.753 3.247 28 H -0.212 1.212 29 H -0.208 1.208 30 H -0.224 1.224 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.062 0.938 52 H 0.016 0.984 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.525 -2.382 -9.779 10.377 hybrid contribution 0.503 0.875 1.467 1.780 sum 3.029 -1.508 -8.312 8.974 Atomic orbital electron populations 1.22104 0.91444 1.04175 1.03999 1.22634 0.96588 0.95862 0.83220 0.88344 1.88086 1.22216 1.78709 1.41759 1.23420 0.80618 1.01792 0.99138 1.23735 1.01402 0.97683 0.84884 1.88098 1.18038 1.77693 1.44944 1.22981 0.83186 0.93733 1.02537 0.84838 1.21376 0.83014 0.91840 0.76198 1.90525 1.60562 1.42346 1.53060 1.46524 1.06891 1.10967 1.69515 1.21232 0.93413 0.84095 0.99853 1.20947 0.91362 0.93670 0.88451 0.94985 1.22029 0.96542 0.96344 1.01500 1.21377 0.95464 1.00406 0.95524 1.21156 0.95304 0.97258 0.95654 1.21618 1.00204 0.98356 0.97264 1.21707 0.94603 1.01671 1.00654 1.20534 0.83240 0.91218 0.97573 1.44107 1.03014 1.66400 1.18136 1.19041 0.93585 1.02298 1.21313 0.93145 1.25457 0.98107 0.96378 1.01840 1.70067 1.27323 1.16252 1.42428 0.85909 0.79958 0.78185 0.80675 1.21180 1.20846 1.22360 0.90249 0.89255 0.91426 0.90529 0.85753 0.85701 0.91317 0.74085 0.93996 0.91438 0.92322 0.90506 0.90988 0.92633 0.95201 0.92338 0.93644 0.92958 0.91443 0.93983 0.93817 0.98402 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 7.94 71.98 0.57 -3.81 16 2 C 0.08 2.09 3.15 30.64 0.10 2.18 16 3 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 4 O -0.39 -11.08 10.23 -136.00 -1.39 -12.47 16 5 C 0.03 0.61 7.05 72.03 0.51 1.11 16 6 C 0.00 -0.03 6.59 72.03 0.47 0.45 16 7 O -0.37 -12.45 10.50 -122.89 -1.29 -13.74 16 8 C 0.04 1.25 3.39 29.90 0.10 1.35 16 9 H 0.13 4.40 8.14 -2.39 -0.02 4.38 16 10 C 0.49 19.13 6.52 87.66 0.57 19.70 16 11 O -0.58 -25.78 13.90 15.94 0.22 -25.56 16 12 N -0.68 -26.09 2.28 -463.05 -1.05 -27.14 16 13 C 0.14 5.15 4.46 86.38 0.39 5.53 16 14 C 0.16 5.88 3.05 45.12 0.14 6.01 16 15 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 16 C -0.12 -3.78 5.05 30.82 0.16 -3.62 16 17 C -0.09 -2.59 4.71 30.62 0.14 -2.44 16 18 C -0.09 -3.06 0.77 -52.11 -0.04 -3.10 16 19 C -0.12 -3.94 7.99 71.98 0.58 -3.37 16 20 C -0.13 -3.68 8.48 71.98 0.61 -3.07 16 21 C 0.20 8.53 3.91 86.36 0.34 8.87 16 22 N -0.59 -25.52 2.38 -674.40 -1.61 -27.13 16 23 C -0.23 -11.17 6.67 84.03 0.56 -10.61 16 24 H 0.05 2.61 6.10 -2.91 -0.02 2.59 16 25 C -0.02 -1.02 5.01 84.86 0.43 -0.59 16 26 N -0.92 -47.98 11.37 21.65 0.25 -47.73 16 27 Si 0.92 42.63 29.57 68.60 2.03 44.66 16 28 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 29 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 30 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 31 H 0.08 2.30 7.52 -2.39 -0.02 2.28 16 32 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.07 2.08 5.90 -2.39 -0.01 2.06 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.43 16 35 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.07 2.35 5.48 -2.39 -0.01 2.33 16 38 H 0.42 16.25 4.54 -92.71 -0.42 15.83 16 39 H 0.04 1.75 7.49 -2.39 -0.02 1.73 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 1.88 6.33 -2.39 -0.02 1.87 16 42 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.04 1.70 5.97 -2.39 -0.01 1.69 16 48 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.04 2.18 6.42 -2.39 -0.02 2.17 16 52 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 53 H 0.25 12.93 8.31 -92.71 -0.77 12.16 16 Total: -1.00 -60.75 388.75 3.24 -57.51 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: 0.47 Total: 37.03 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.61 Total: 14.58 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -2.41 Total: -102.00 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -2.46 Total: -51.77 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -60.75 3.24 -57.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089655105.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.876 kcal (2) G-P(sol) polarization free energy of solvation -60.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds