Wall clock time and date at job start Wed Apr 1 2020 00:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.48657 * 2 1 4 4 O 1.42896 * 109.47958 * 239.96917 * 2 1 3 5 5 C 1.42898 * 114.09797 * 178.85887 * 4 2 1 6 6 C 1.53095 * 109.41325 * 61.16028 * 5 4 2 7 7 C 1.53175 * 109.16254 * 302.38976 * 6 5 4 8 8 C 1.53089 * 109.47851 * 120.02871 * 2 1 3 9 9 H 1.09005 * 109.57291 * 57.65204 * 8 2 1 10 10 C 1.50704 * 109.52119 * 297.50021 * 8 2 1 11 11 O 1.21278 * 119.99982 * 351.53950 * 10 8 2 12 12 N 1.34783 * 119.99736 * 171.82218 * 10 8 2 13 13 C 1.46920 * 120.62928 * 356.21623 * 12 10 8 14 14 C 1.52762 * 109.00961 * 233.58539 * 13 12 10 15 15 C 1.53039 * 109.38542 * 305.59140 * 14 13 12 16 16 N 1.46495 * 109.45387 * 181.25209 * 15 14 13 17 17 C 1.36940 * 119.99764 * 299.94162 * 16 15 14 18 18 H 1.07999 * 120.00050 * 325.14718 * 17 16 15 19 19 C 1.38808 * 119.99986 * 145.14987 * 17 16 15 20 20 N 1.31621 * 120.00203 * 337.73760 * 19 17 16 21 21 Si 1.86808 * 119.99976 * 157.73582 * 19 17 16 22 22 H 1.48500 * 109.46765 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46848 * 120.00115 * 21 19 17 24 24 H 1.48503 * 109.47085 * 240.00090 * 21 19 17 25 25 C 1.46496 * 120.00152 * 119.93796 * 16 15 14 26 26 C 1.52995 * 109.47377 * 84.39577 * 25 16 15 27 27 O 1.42903 * 109.47143 * 64.99627 * 26 25 16 28 28 C 1.53045 * 109.53744 * 61.23516 * 15 14 13 29 29 C 1.46927 * 120.62902 * 176.50027 * 12 10 8 30 30 H 1.08994 * 109.47088 * 299.97075 * 1 2 3 31 31 H 1.09005 * 109.47147 * 59.97590 * 1 2 3 32 32 H 1.08998 * 109.47407 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.48172 * 301.17810 * 5 4 2 34 34 H 1.09006 * 109.48712 * 181.14035 * 5 4 2 35 35 H 1.09002 * 109.52283 * 182.48799 * 6 5 4 36 36 H 1.08997 * 109.52495 * 62.29821 * 6 5 4 37 37 H 1.08994 * 109.54771 * 297.11359 * 7 6 5 38 38 H 1.09006 * 109.54620 * 176.84471 * 7 6 5 39 39 H 1.09003 * 109.59129 * 353.42377 * 13 12 10 40 40 H 1.09006 * 109.58781 * 113.84721 * 13 12 10 41 41 H 1.09000 * 109.56462 * 185.55574 * 14 13 12 42 42 H 1.09001 * 109.35674 * 65.50301 * 14 13 12 43 43 H 1.09005 * 109.46041 * 301.21989 * 15 14 13 44 44 H 0.97000 * 119.99693 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.46776 * 204.39601 * 25 16 15 46 46 H 1.08998 * 109.47216 * 324.38952 * 25 16 15 47 47 H 1.08994 * 109.47418 * 184.99762 * 26 25 16 48 48 H 1.09002 * 109.47397 * 305.00206 * 26 25 16 49 49 H 0.96703 * 114.00323 * 180.02562 * 27 26 25 50 50 H 1.08998 * 109.49703 * 178.68248 * 28 15 14 51 51 H 1.09004 * 109.49310 * 58.58925 * 28 15 14 52 52 H 1.08993 * 109.58453 * 246.15263 * 29 12 10 53 53 H 1.08995 * 109.58541 * 6.43918 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 8 2.0065 -0.6742 -1.1663 5 6 3.4306 -0.7093 -1.2790 6 6 4.0175 -1.4601 -0.0808 7 6 3.5711 -0.7709 1.2122 8 6 2.0405 -0.7223 1.2495 9 1 1.6442 -1.7375 1.2720 10 6 1.5901 0.0215 2.4804 11 8 1.0605 1.1072 2.3730 12 7 1.7810 -0.5174 3.7010 13 6 2.3511 -1.8640 3.8439 14 6 1.4198 -2.7091 4.7110 15 6 1.1680 -1.9888 6.0376 16 7 0.2991 -2.8117 6.8824 17 6 -0.9544 -3.1523 6.4487 18 1 -1.5269 -2.4572 5.8525 19 6 -1.4891 -4.3909 6.7753 20 7 -0.6922 -5.3869 7.0999 21 14 -3.3398 -4.6442 6.7544 22 1 -4.0081 -3.3784 6.3587 23 1 -3.6824 -5.7102 5.7790 24 1 -3.7999 -5.0453 8.1081 25 6 0.7711 -3.2704 8.1912 26 6 0.5254 -2.1778 9.2336 27 8 -0.8806 -1.9747 9.3886 28 6 0.4913 -0.6427 5.7686 29 6 1.4173 0.2281 4.9137 30 1 -0.3633 0.5133 0.8902 31 1 -0.3634 0.5142 -0.8898 32 1 -0.3634 -1.0276 -0.0005 33 1 3.8192 0.3089 -1.2957 34 1 3.7100 -1.2204 -2.2004 35 1 5.1058 -1.4498 -0.1420 36 1 3.6612 -2.4902 -0.0863 37 1 3.9689 0.2434 1.2409 38 1 3.9390 -1.3327 2.0708 39 1 2.4512 -2.3246 2.8610 40 1 3.3294 -1.7980 4.3200 41 1 1.8805 -3.6778 4.9048 42 1 0.4733 -2.8536 4.1901 43 1 2.1176 -1.8225 6.5465 44 1 -1.0660 -6.2523 7.3285 45 1 0.2304 -4.1729 8.4765 46 1 1.8378 -3.4878 8.1371 47 1 0.9559 -2.4823 10.1876 48 1 0.9923 -1.2496 8.9041 49 1 -1.1107 -1.2937 10.0355 50 1 0.2911 -0.1406 6.7152 51 1 -0.4465 -0.8066 5.2378 52 1 2.3178 0.4682 5.4788 53 1 0.9036 1.1486 4.6364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098354344.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:11 Heat of formation + Delta-G solvation = -135.111867 kcal Electronic energy + Delta-G solvation = -32337.313564 eV Core-core repulsion = 28208.492415 eV Total energy + Delta-G solvation = -4128.821149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.82361 -40.00765 -38.93013 -37.66699 -36.27088 -34.94085 -33.68108 -33.64128 -32.05042 -31.91856 -29.52738 -28.87911 -26.73001 -25.80999 -24.61821 -24.22665 -23.26252 -22.37965 -21.78260 -21.11656 -20.02995 -18.65675 -18.19092 -17.92962 -17.30522 -17.00276 -16.76121 -16.42237 -16.20584 -16.03646 -15.73781 -15.58024 -15.22890 -14.95900 -14.82413 -14.56770 -14.32358 -14.08862 -14.03006 -13.72426 -13.53969 -13.25484 -13.23985 -13.13009 -13.00738 -12.85367 -12.74563 -12.56801 -12.39101 -12.32871 -12.14804 -11.97999 -11.90498 -11.80544 -11.58988 -11.50297 -11.31252 -11.13222 -10.71017 -10.62921 -10.40310 -10.36186 -9.61688 -8.47418 -7.75176 -5.27016 1.41646 1.46657 1.54027 1.56282 1.98621 2.55957 2.80930 3.35360 3.44900 3.54845 3.61360 3.72922 3.84281 3.89876 4.00719 4.08341 4.15276 4.19800 4.25033 4.36373 4.38253 4.44809 4.46588 4.58157 4.59493 4.61927 4.70190 4.75677 4.77829 4.80768 4.84442 4.88154 4.90414 4.93129 4.94597 5.05602 5.08854 5.10664 5.17011 5.19777 5.27125 5.32538 5.46935 5.61340 5.67605 5.76244 5.86587 6.25539 6.42253 6.54808 7.13356 7.20756 7.29291 7.99873 8.45996 9.22575 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.003189 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.234430 B = 8777.510976 C = 9312.278337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.114 3.886 3 H 0.059 0.941 4 O -0.394 6.394 5 C 0.049 3.951 6 C -0.149 4.149 7 C -0.113 4.113 8 C -0.134 4.134 9 H 0.103 0.897 10 C 0.521 3.479 11 O -0.579 6.579 12 N -0.602 5.602 13 C 0.115 3.885 14 C -0.127 4.127 15 C 0.173 3.827 16 N -0.584 5.584 17 C -0.218 4.218 18 H 0.038 0.962 19 C -0.030 4.030 20 N -0.917 5.917 21 Si 0.936 3.064 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.295 1.295 25 C 0.137 3.863 26 C 0.067 3.933 27 O -0.578 6.578 28 C -0.124 4.124 29 C 0.121 3.879 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.245 0.755 45 H 0.066 0.934 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.040 0.960 49 H 0.374 0.626 50 H 0.064 0.936 51 H 0.030 0.970 52 H 0.090 0.910 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.284 9.511 -9.289 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.056 3.944 3 H 0.077 0.923 4 O -0.313 6.313 5 C -0.027 4.027 6 C -0.186 4.186 7 C -0.150 4.150 8 C -0.155 4.155 9 H 0.121 0.879 10 C 0.311 3.689 11 O -0.459 6.459 12 N -0.334 5.334 13 C -0.008 4.008 14 C -0.167 4.167 15 C 0.067 3.933 16 N -0.304 5.304 17 C -0.349 4.349 18 H 0.055 0.945 19 C -0.226 4.226 20 N -0.563 5.563 21 Si 0.767 3.233 22 H -0.206 1.206 23 H -0.222 1.222 24 H -0.222 1.222 25 C 0.010 3.990 26 C -0.013 4.013 27 O -0.383 6.383 28 C -0.165 4.165 29 C -0.002 4.002 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.220 0.780 50 H 0.083 0.917 51 H 0.049 0.951 52 H 0.108 0.892 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.837 9.349 -9.879 19.402 hybrid contribution -1.469 -0.005 1.028 1.794 sum 12.367 9.345 -8.850 17.849 Atomic orbital electron populations 1.21836 0.93432 1.02380 1.02921 1.21649 0.94986 0.94412 0.83390 0.92283 1.87940 1.22921 1.78135 1.42310 1.22862 0.79725 1.00488 0.99664 1.22189 1.02707 1.00233 0.93471 1.21697 0.90562 1.02415 1.00349 1.21984 0.99819 1.01149 0.92586 0.87898 1.20755 0.77538 0.85680 0.84960 1.90627 1.45100 1.23470 1.86733 1.48203 1.61956 1.17672 1.05551 1.21923 0.96832 0.80511 1.01508 1.22081 0.98730 0.98728 0.97172 1.20511 0.92611 0.89609 0.90609 1.43901 1.13340 1.59050 1.14065 1.18746 0.91736 0.95302 1.29081 0.94459 1.25361 0.99664 0.95099 1.02500 1.70072 1.33782 1.00753 1.51677 0.85697 0.84135 0.76924 0.76507 1.20584 1.22239 1.22222 1.21004 0.96655 0.96911 0.84395 1.22920 0.81271 0.99023 0.98080 1.86771 1.24417 1.61858 1.65229 1.22154 0.98246 0.97173 0.98883 1.21575 0.99206 0.94609 0.84784 0.91409 0.91251 0.92481 0.92567 0.86987 0.87915 0.90688 0.91257 0.89075 0.88398 0.88656 0.91997 0.94702 0.91147 0.94530 0.91630 0.93198 0.93693 0.94184 0.77978 0.91721 0.95101 0.89227 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.94 9.28 71.98 0.67 -3.27 16 2 C 0.11 2.78 2.39 30.63 0.07 2.86 16 3 H 0.06 1.52 7.93 -2.39 -0.02 1.50 16 4 O -0.39 -8.99 10.41 -148.98 -1.55 -10.54 16 5 C 0.05 0.74 6.84 72.01 0.49 1.23 16 6 C -0.15 -1.92 6.14 30.68 0.19 -1.73 16 7 C -0.11 -1.84 4.98 30.71 0.15 -1.68 16 8 C -0.13 -3.06 1.37 -11.45 -0.02 -3.08 16 9 H 0.10 2.41 7.07 -2.38 -0.02 2.39 16 10 C 0.52 14.91 6.55 87.66 0.57 15.48 16 11 O -0.58 -20.12 13.60 -3.02 -0.04 -20.16 16 12 N -0.60 -16.37 2.98 -819.74 -2.44 -18.82 16 13 C 0.11 2.76 5.08 86.22 0.44 3.19 16 14 C -0.13 -4.37 5.29 30.53 0.16 -4.21 16 15 C 0.17 6.31 2.60 45.02 0.12 6.42 16 16 N -0.58 -26.84 2.34 -677.90 -1.59 -28.43 16 17 C -0.22 -11.70 8.05 84.03 0.68 -11.02 16 18 H 0.04 2.13 6.87 -2.91 -0.02 2.11 16 19 C -0.03 -1.69 4.90 84.86 0.42 -1.27 16 20 N -0.92 -52.84 11.41 21.65 0.25 -52.60 16 21 Si 0.94 46.90 29.61 68.60 2.03 48.93 16 22 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 25 C 0.14 6.02 5.57 86.38 0.48 6.50 16 26 C 0.07 2.41 7.39 71.98 0.53 2.94 16 27 O -0.58 -23.19 13.40 -148.98 -2.00 -25.19 16 28 C -0.12 -4.32 5.30 30.67 0.16 -4.16 16 29 C 0.12 3.41 6.44 86.36 0.56 3.97 16 30 H 0.07 2.07 6.05 -2.39 -0.01 2.06 16 31 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.28 6.12 -2.38 -0.01 1.26 16 39 H 0.10 2.02 4.96 -2.39 -0.01 2.01 16 40 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.03 1.44 7.71 -2.39 -0.02 1.42 16 43 H 0.07 2.25 7.87 -2.38 -0.02 2.23 16 44 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.07 3.49 5.42 -2.39 -0.01 3.48 16 46 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 47 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 48 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.37 10.58 9.12 -74.06 -0.68 9.90 16 50 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.03 1.28 7.04 -2.38 -0.02 1.27 16 52 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 53 H 0.07 2.30 7.00 -2.39 -0.02 2.29 16 Total: -1.00 -70.47 398.57 0.56 -69.91 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.22 Total: 24.70 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 5.67 Total: 12.19 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -3.78 Total: -99.84 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -3.59 Total: -55.89 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -70.47 0.56 -69.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098354344.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.205 kcal (2) G-P(sol) polarization free energy of solvation -70.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds