Wall clock time and date at job start Wed Apr 1 2020 00:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47566 * 2 1 4 4 O 1.42902 * 109.48156 * 239.96569 * 2 1 3 5 5 C 1.42905 * 114.15476 * 178.89222 * 4 2 1 6 6 C 1.53096 * 109.41089 * 61.05613 * 5 4 2 7 7 C 1.53176 * 109.21490 * 302.48993 * 6 5 4 8 8 C 1.53085 * 109.47896 * 120.01863 * 2 1 3 9 9 H 1.09000 * 109.52718 * 297.49830 * 8 2 1 10 10 C 1.50701 * 109.57543 * 57.65822 * 8 2 1 11 11 O 1.21283 * 119.99763 * 11.18078 * 10 8 2 12 12 N 1.34776 * 120.00283 * 191.17790 * 10 8 2 13 13 C 1.46927 * 120.63024 * 182.38146 * 12 10 8 14 14 C 1.52757 * 109.00570 * 233.58438 * 13 12 10 15 15 C 1.53048 * 109.38574 * 305.58599 * 14 13 12 16 16 N 1.46502 * 109.46091 * 181.26015 * 15 14 13 17 17 C 1.36938 * 120.00107 * 299.93635 * 16 15 14 18 18 H 1.08003 * 119.99731 * 323.44494 * 17 16 15 19 19 C 1.38811 * 120.00137 * 143.44689 * 17 16 15 20 20 N 1.31625 * 119.99738 * 338.30257 * 19 17 16 21 21 Si 1.86798 * 120.00204 * 158.30206 * 19 17 16 22 22 H 1.48500 * 109.47113 * 89.99874 * 21 19 17 23 23 H 1.48497 * 109.47110 * 209.99853 * 21 19 17 24 24 H 1.48505 * 109.46984 * 329.99904 * 21 19 17 25 25 C 1.46492 * 119.99512 * 119.93357 * 16 15 14 26 26 C 1.53002 * 109.47356 * 84.40472 * 25 16 15 27 27 O 1.42903 * 109.47251 * 64.99310 * 26 25 16 28 28 C 1.53047 * 109.53281 * 61.24142 * 15 14 13 29 29 C 1.46919 * 120.62767 * 2.65991 * 12 10 8 30 30 H 1.08997 * 109.47300 * 299.97959 * 1 2 3 31 31 H 1.09003 * 109.47227 * 59.98291 * 1 2 3 32 32 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.42546 * 301.10792 * 5 4 2 34 34 H 1.08996 * 109.53965 * 181.07332 * 5 4 2 35 35 H 1.09003 * 109.51787 * 182.55147 * 6 5 4 36 36 H 1.08998 * 109.52294 * 62.43257 * 6 5 4 37 37 H 1.08994 * 109.54030 * 176.81690 * 7 6 5 38 38 H 1.09002 * 109.54565 * 297.08442 * 7 6 5 39 39 H 1.09000 * 109.58539 * 353.41671 * 13 12 10 40 40 H 1.08998 * 109.58674 * 113.84818 * 13 12 10 41 41 H 1.08997 * 109.56484 * 185.55545 * 14 13 12 42 42 H 1.08998 * 109.39175 * 65.51561 * 14 13 12 43 43 H 1.08996 * 109.45927 * 301.22238 * 15 14 13 44 44 H 0.96995 * 119.99782 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.47388 * 204.40150 * 25 16 15 46 46 H 1.09001 * 109.47654 * 324.40145 * 25 16 15 47 47 H 1.08996 * 109.47351 * 184.99463 * 26 25 16 48 48 H 1.09003 * 109.46806 * 305.00066 * 26 25 16 49 49 H 0.96694 * 114.00090 * 180.02562 * 27 26 25 50 50 H 1.08997 * 109.49368 * 178.68533 * 28 15 14 51 51 H 1.08998 * 109.52180 * 58.60613 * 28 15 14 52 52 H 1.08998 * 109.59081 * 246.15382 * 29 12 10 53 53 H 1.08999 * 109.59433 * 6.58370 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0066 -0.6743 -1.1663 5 6 3.4307 -0.7108 -1.2798 6 6 4.0176 -1.4600 -0.0806 7 6 3.5711 -0.7706 1.2123 8 6 2.0405 -0.7220 1.2496 9 1 1.7148 -0.1840 2.1399 10 6 1.4927 -2.1256 1.2810 11 8 0.9367 -2.5815 0.3043 12 7 1.6208 -2.8743 2.3943 13 6 1.1384 -4.2619 2.4229 14 6 0.1973 -4.4369 3.6133 15 6 0.9089 -3.9920 4.8932 16 7 0.0184 -4.1875 6.0399 17 6 -1.1864 -3.5384 6.0897 18 1 -1.2739 -2.5324 5.7068 19 6 -2.2950 -4.1735 6.6323 20 7 -2.3312 -5.4873 6.7040 21 14 -3.7354 -3.1638 7.2607 22 1 -4.7076 -2.9491 6.1588 23 1 -4.4003 -3.8888 8.3731 24 1 -3.2435 -1.8506 7.7496 25 6 0.4168 -5.0773 7.1333 26 6 1.2995 -4.3098 8.1197 27 8 0.5341 -3.2724 8.7362 28 6 1.2815 -2.5117 4.7833 29 6 2.2399 -2.3165 3.6043 30 1 -0.3634 0.5135 0.8901 31 1 -0.3634 0.5141 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 3.8191 0.3075 -1.2978 34 1 3.7100 -1.2229 -2.2005 35 1 5.1059 -1.4497 -0.1419 36 1 3.6623 -2.4905 -0.0855 37 1 3.9391 -1.3323 2.0708 38 1 3.9689 0.2438 1.2408 39 1 0.6022 -4.4814 1.4996 40 1 1.9847 -4.9409 2.5268 41 1 -0.0884 -5.4851 3.7016 42 1 -0.6942 -3.8283 3.4624 43 1 1.8132 -4.5848 5.0307 44 1 -3.1058 -5.9311 7.0835 45 1 -0.4724 -5.4408 7.6484 46 1 0.9737 -5.9227 6.7292 47 1 1.6683 -4.9929 8.8848 48 1 2.1432 -3.8711 7.5869 49 1 1.0314 -2.7434 9.3749 50 1 1.7673 -2.1896 5.7043 51 1 0.3803 -1.9203 4.6214 52 1 3.1779 -2.8337 3.8065 53 1 2.4303 -1.2530 3.4605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098354349.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:24 Heat of formation + Delta-G solvation = -130.378551 kcal Electronic energy + Delta-G solvation = -32654.398427 eV Core-core repulsion = 28525.782530 eV Total energy + Delta-G solvation = -4128.615897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.85274 -39.88515 -38.66418 -37.55991 -36.21850 -34.86557 -33.65250 -33.60903 -32.09161 -31.82276 -29.48012 -28.81810 -26.68175 -25.64806 -24.66155 -24.22650 -23.10678 -22.65718 -21.92658 -21.10121 -19.67482 -18.33143 -18.15945 -17.79302 -17.36680 -16.91805 -16.72163 -16.43414 -16.19890 -15.98765 -15.64305 -15.49425 -15.14483 -15.03097 -14.82317 -14.48222 -14.25491 -13.96208 -13.88283 -13.64495 -13.53317 -13.21134 -13.14502 -13.04381 -12.97810 -12.87442 -12.72563 -12.62478 -12.52237 -12.35418 -12.08076 -11.95022 -11.81195 -11.63686 -11.57068 -11.45558 -11.29704 -11.10896 -10.61315 -10.51294 -10.36887 -10.22274 -9.51488 -8.44637 -7.74570 -5.28456 1.42779 1.46135 1.54889 1.76050 2.09940 2.56661 2.94961 3.36394 3.48382 3.57766 3.74387 3.78624 3.85896 3.93542 4.04439 4.07447 4.17320 4.26926 4.33091 4.41542 4.44318 4.45819 4.47085 4.59967 4.62017 4.68276 4.72841 4.75852 4.79422 4.80677 4.85412 4.86018 4.91057 4.95675 4.96766 5.08041 5.11811 5.14624 5.18052 5.24135 5.29988 5.39861 5.50579 5.61887 5.71529 5.76651 5.85149 6.47093 6.55518 6.56570 7.24095 7.30936 7.34314 7.99779 8.47644 9.23565 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.003281 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.447333 B = 8532.508487 C = 9198.747258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.108 3.892 3 H 0.091 0.909 4 O -0.393 6.393 5 C 0.054 3.946 6 C -0.155 4.155 7 C -0.110 4.110 8 C -0.140 4.140 9 H 0.119 0.881 10 C 0.517 3.483 11 O -0.567 6.567 12 N -0.609 5.609 13 C 0.125 3.875 14 C -0.120 4.120 15 C 0.174 3.826 16 N -0.584 5.584 17 C -0.218 4.218 18 H 0.044 0.956 19 C -0.036 4.036 20 N -0.922 5.922 21 Si 0.941 3.059 22 H -0.293 1.293 23 H -0.296 1.296 24 H -0.276 1.276 25 C 0.139 3.861 26 C 0.070 3.930 27 O -0.576 6.576 28 C -0.128 4.128 29 C 0.114 3.886 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.039 0.961 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.029 0.971 43 H 0.066 0.934 44 H 0.244 0.756 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.375 0.625 50 H 0.076 0.924 51 H 0.038 0.962 52 H 0.091 0.909 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.989 11.444 -7.541 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.109 0.891 4 O -0.312 6.312 5 C -0.023 4.023 6 C -0.193 4.193 7 C -0.147 4.147 8 C -0.162 4.162 9 H 0.137 0.863 10 C 0.306 3.694 11 O -0.446 6.446 12 N -0.342 5.342 13 C 0.001 3.999 14 C -0.160 4.160 15 C 0.067 3.933 16 N -0.304 5.304 17 C -0.349 4.349 18 H 0.061 0.939 19 C -0.232 4.232 20 N -0.569 5.569 21 Si 0.771 3.229 22 H -0.221 1.221 23 H -0.223 1.223 24 H -0.201 1.201 25 C 0.012 3.988 26 C -0.010 4.010 27 O -0.381 6.381 28 C -0.168 4.168 29 C -0.008 4.008 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.221 0.779 50 H 0.095 0.905 51 H 0.057 0.943 52 H 0.109 0.891 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.983 10.749 -8.506 22.611 hybrid contribution -1.104 0.016 1.094 1.554 sum 16.879 10.765 -7.412 21.348 Atomic orbital electron populations 1.21949 0.94262 1.02704 1.02591 1.21929 0.94677 0.94810 0.83617 0.89122 1.88036 1.21984 1.78467 1.42748 1.22722 0.80525 1.00463 0.98551 1.22175 1.02304 0.99156 0.95659 1.21704 0.90589 1.03707 0.98715 1.22183 0.99253 0.92705 1.02015 0.86302 1.20953 0.78422 0.88229 0.81795 1.90666 1.44216 1.73863 1.35821 1.48248 1.59922 1.13061 1.12953 1.21344 0.97636 0.82778 0.98113 1.22022 0.98071 1.00021 0.95885 1.20518 0.92158 0.94659 0.85959 1.43903 1.16925 1.52616 1.16924 1.18762 0.86379 0.94273 1.35509 0.93866 1.25526 0.99011 0.95457 1.03211 1.70107 1.29964 1.07918 1.48870 0.85697 0.80499 0.79123 0.77578 1.22059 1.22291 1.20094 1.20945 0.97870 0.90960 0.88991 1.22859 0.93728 0.89454 0.94933 1.86775 1.41817 1.48691 1.60856 1.22186 0.98705 0.97911 0.98021 1.22003 0.95723 1.00603 0.82468 0.90317 0.91697 0.93350 0.91023 0.89156 0.88222 0.94217 0.89548 0.87621 0.91809 0.90128 0.93617 0.95236 0.91539 0.94671 0.92214 0.93796 0.93814 0.93672 0.77875 0.90544 0.94329 0.89123 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.22 71.98 0.66 -3.36 16 2 C 0.11 2.36 2.84 30.62 0.09 2.44 16 3 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 4 O -0.39 -10.37 9.21 -130.64 -1.20 -11.57 16 5 C 0.05 0.97 6.85 72.01 0.49 1.46 16 6 C -0.16 -2.56 5.87 30.69 0.18 -2.38 16 7 C -0.11 -1.52 5.20 30.71 0.16 -1.36 16 8 C -0.14 -2.85 1.73 -11.45 -0.02 -2.87 16 9 H 0.12 2.00 6.94 -2.39 -0.02 1.99 16 10 C 0.52 15.24 5.31 87.66 0.47 15.71 16 11 O -0.57 -21.70 12.64 15.30 0.19 -21.51 16 12 N -0.61 -17.19 2.98 -819.76 -2.44 -19.63 16 13 C 0.12 4.05 6.41 86.22 0.55 4.60 16 14 C -0.12 -4.76 5.29 30.53 0.16 -4.60 16 15 C 0.17 6.46 2.60 45.02 0.12 6.58 16 16 N -0.58 -27.12 2.33 -677.87 -1.58 -28.69 16 17 C -0.22 -11.74 8.03 84.03 0.67 -11.07 16 18 H 0.04 2.40 6.88 -2.91 -0.02 2.38 16 19 C -0.04 -2.06 4.90 84.86 0.42 -1.64 16 20 N -0.92 -54.82 11.50 21.65 0.25 -54.58 16 21 Si 0.94 46.99 29.61 68.60 2.03 49.02 16 22 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.14 6.18 5.56 86.38 0.48 6.67 16 26 C 0.07 2.46 7.39 71.98 0.53 2.99 16 27 O -0.58 -22.18 13.40 -148.98 -2.00 -24.18 16 28 C -0.13 -3.95 5.30 30.67 0.16 -3.78 16 29 C 0.11 2.51 5.16 86.36 0.45 2.96 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.62 5.74 -2.39 -0.01 1.61 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.04 0.92 7.40 -2.39 -0.02 0.91 16 37 H 0.09 1.05 6.39 -2.39 -0.02 1.03 16 38 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.06 2.34 7.00 -2.39 -0.02 2.32 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.03 1.38 7.71 -2.39 -0.02 1.36 16 43 H 0.07 2.21 7.87 -2.39 -0.02 2.19 16 44 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.06 3.23 5.53 -2.39 -0.01 3.22 16 46 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 47 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.37 9.84 9.12 -74.06 -0.68 9.16 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.04 1.42 7.05 -2.39 -0.02 1.40 16 52 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 53 H 0.11 1.75 5.06 -2.39 -0.01 1.73 16 Total: -1.00 -76.42 395.52 1.05 -75.37 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.22 Total: 23.42 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.57 Total: 12.34 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.77 Total: -102.90 kcal Atomic # 8 Polarization: -54.25 SS G_CDS: -3.01 Total: -57.26 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -76.42 1.05 -75.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098354349.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.007 kcal (2) G-P(sol) polarization free energy of solvation -76.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds