Wall clock time and date at job start Tue Mar 31 2020 23:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.98723 * 2 1 4 4 O 1.43743 * 109.87974 * 121.08010 * 2 1 3 5 5 C 1.44379 * 106.97305 * 145.93627 * 4 2 1 6 6 C 1.54995 * 103.49444 * 319.94484 * 5 4 2 7 7 C 1.54097 * 109.87806 * 238.91473 * 2 1 3 8 8 C 1.53004 * 110.59751 * 119.81412 * 7 2 1 9 9 C 1.50693 * 110.49124 * 357.22222 * 7 2 1 10 10 O 1.21281 * 120.00090 * 2.26312 * 9 7 2 11 11 N 1.34777 * 120.00131 * 182.26506 * 9 7 2 12 12 C 1.46923 * 120.63090 * 3.80342 * 11 9 7 13 13 C 1.53627 * 108.54072 * 126.36895 * 12 11 9 14 14 C 1.53037 * 109.24107 * 54.85901 * 13 12 11 15 15 N 1.46503 * 109.44826 * 178.49662 * 14 13 12 16 16 C 1.36937 * 120.00017 * 60.06011 * 15 14 13 17 17 H 1.08001 * 119.99993 * 321.34072 * 16 15 14 18 18 C 1.38817 * 119.99847 * 141.33789 * 16 15 14 19 19 N 1.31618 * 119.99645 * 159.71781 * 18 16 15 20 20 Si 1.86796 * 119.99887 * 339.71763 * 18 16 15 21 21 H 1.48502 * 109.47262 * 90.72500 * 20 18 16 22 22 H 1.48504 * 109.46969 * 210.71957 * 20 18 16 23 23 H 1.48490 * 109.47516 * 330.71772 * 20 18 16 24 24 C 1.46498 * 120.00031 * 240.06231 * 15 14 13 25 25 C 1.52999 * 109.47205 * 85.10813 * 24 15 14 26 26 O 1.42900 * 109.47284 * 65.93020 * 25 24 15 27 27 C 1.53042 * 109.53692 * 298.50663 * 14 13 12 28 28 C 1.46929 * 120.62981 * 184.08778 * 11 9 7 29 29 H 1.08994 * 109.47261 * 303.91322 * 1 2 3 30 30 H 1.09002 * 109.46897 * 63.91762 * 1 2 3 31 31 H 1.09002 * 109.46342 * 183.91294 * 1 2 3 32 32 H 1.09004 * 110.61448 * 78.44721 * 5 4 2 33 33 H 1.08999 * 110.61707 * 201.27849 * 5 4 2 34 34 H 1.08998 * 110.90486 * 155.21688 * 6 5 4 35 35 H 1.08995 * 110.90446 * 278.82494 * 6 5 4 36 36 H 1.08997 * 109.47156 * 180.37279 * 8 7 2 37 37 H 1.09002 * 109.46941 * 300.36579 * 8 7 2 38 38 H 1.08993 * 109.47441 * 60.36956 * 8 7 2 39 39 H 1.08997 * 109.58906 * 246.20149 * 12 11 9 40 40 H 1.09000 * 109.58416 * 6.62962 * 12 11 9 41 41 H 1.09003 * 109.63701 * 294.86876 * 13 12 11 42 42 H 1.09000 * 109.43431 * 174.73010 * 13 12 11 43 43 H 1.08998 * 109.46192 * 58.53084 * 14 13 12 44 44 H 0.97000 * 119.99915 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.47078 * 205.10839 * 24 15 14 46 46 H 1.09003 * 109.46899 * 325.10706 * 24 15 14 47 47 H 1.08997 * 109.47032 * 185.92926 * 25 24 15 48 48 H 1.08998 * 109.47232 * 305.93175 * 25 24 15 49 49 H 0.96698 * 114.00067 * 179.97438 * 26 25 24 50 50 H 1.08996 * 109.49691 * 301.41348 * 27 14 13 51 51 H 1.08999 * 109.49575 * 181.31689 * 27 14 13 52 52 H 1.08996 * 109.58924 * 353.37078 * 28 11 9 53 53 H 1.08993 * 109.58901 * 113.65791 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0189 -0.6978 1.1577 5 6 3.2380 -1.3641 0.7647 6 6 2.9197 -1.8914 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 6 2.9067 0.1797 -2.1088 9 6 0.9075 -1.3105 -2.0411 10 8 -0.2352 -1.1039 -1.6910 11 7 1.1518 -2.0429 -3.1458 12 6 2.5295 -2.3717 -3.5364 13 6 2.6368 -3.8939 -3.7138 14 6 1.5729 -4.3619 -4.7094 15 7 1.6945 -5.8081 -4.9093 16 6 1.5505 -6.6606 -3.8474 17 1 1.9533 -6.3930 -2.8817 18 6 0.8869 -7.8687 -4.0122 19 7 1.0793 -8.8476 -3.1536 20 14 -0.2790 -8.1050 -5.4523 21 1 0.4689 -8.6601 -6.6089 22 1 -1.3604 -9.0460 -5.0644 23 1 -0.8727 -6.7969 -5.8284 24 6 1.9701 -6.3423 -6.2453 25 6 3.4790 -6.3310 -6.4978 26 8 4.1182 -7.2465 -5.6060 27 6 0.1812 -4.0382 -4.1612 28 6 0.0458 -2.5224 -3.9858 29 1 -0.3633 0.5733 0.8528 30 1 -0.3633 0.4518 -0.9230 31 1 -0.3632 -1.0253 0.0701 32 1 4.0686 -0.6587 0.7357 33 1 3.4600 -2.1889 1.4418 34 1 3.8333 -2.0223 -1.2374 35 1 2.3541 -2.8219 -0.6098 36 1 3.2618 -0.3654 -2.9834 37 1 2.3058 1.0303 -2.4303 38 1 3.7599 0.5351 -1.5311 39 1 2.7719 -1.8737 -4.4752 40 1 3.2181 -2.0437 -2.7578 41 1 2.4789 -4.3866 -2.7544 42 1 3.6268 -4.1459 -4.0940 43 1 1.7163 -3.8505 -5.6612 44 1 0.6153 -9.6916 -3.2685 45 1 1.5982 -7.3648 -6.3116 46 1 1.4719 -5.7253 -6.9932 47 1 3.6773 -6.6285 -7.5275 48 1 3.8683 -5.3271 -6.3283 49 1 5.0784 -7.2918 -5.7104 50 1 0.0465 -4.5295 -3.1976 51 1 -0.5765 -4.3928 -4.8599 52 1 -0.9048 -2.2939 -3.5039 53 1 0.0884 -2.0346 -4.9596 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098438878.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:28 Heat of formation + Delta-G solvation = -76.989812 kcal Electronic energy + Delta-G solvation = -33077.106349 eV Core-core repulsion = 28950.805562 eV Total energy + Delta-G solvation = -4126.300787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.37470 -40.04116 -39.02727 -37.82865 -36.46626 -35.05769 -33.83881 -32.68346 -32.00035 -31.74993 -29.66168 -29.12516 -27.03353 -25.72057 -24.63850 -24.48503 -23.19860 -22.98944 -22.23507 -21.24752 -20.05844 -18.38163 -18.27434 -17.81695 -17.17659 -17.11574 -16.85199 -16.65722 -16.35525 -16.17719 -15.66682 -15.42499 -15.14188 -15.11812 -14.71672 -14.54320 -14.46323 -14.40137 -14.14633 -14.07786 -13.57501 -13.46362 -13.28802 -13.23277 -12.97112 -12.85278 -12.76575 -12.49179 -12.40554 -12.16130 -12.09930 -11.93506 -11.85407 -11.77339 -11.59766 -11.55182 -11.28919 -11.16011 -10.69444 -10.65879 -10.46657 -9.72011 -9.52039 -8.63009 -8.07324 -5.44608 1.28894 1.39764 1.48502 1.56968 2.02593 2.48300 2.84957 3.11541 3.31496 3.37756 3.38873 3.74029 3.75786 3.88929 3.94926 4.06606 4.14631 4.21523 4.23674 4.32115 4.43850 4.46039 4.48215 4.55125 4.56564 4.61746 4.64667 4.69227 4.73604 4.78991 4.79679 4.83434 4.85920 4.89859 4.91800 4.98089 5.03932 5.04854 5.13589 5.16607 5.18759 5.27233 5.46117 5.52917 5.58767 5.70915 5.95958 6.06275 6.29555 6.47472 7.09972 7.20985 7.23777 7.76702 8.14682 9.13797 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.003544 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.384833 B = 7899.145606 C = 8127.435458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.089 3.911 3 H 0.097 0.903 4 O -0.401 6.401 5 C 0.045 3.955 6 C -0.143 4.143 7 C -0.105 4.105 8 C -0.142 4.142 9 C 0.511 3.489 10 O -0.563 6.563 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.129 4.129 14 C 0.175 3.825 15 N -0.603 5.603 16 C -0.206 4.206 17 H 0.031 0.969 18 C -0.028 4.028 19 N -0.960 5.960 20 Si 0.938 3.062 21 H -0.278 1.278 22 H -0.322 1.322 23 H -0.254 1.254 24 C 0.113 3.887 25 C 0.066 3.934 26 O -0.580 6.580 27 C -0.132 4.132 28 C 0.122 3.878 29 H 0.023 0.977 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.030 0.970 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.254 0.746 45 H 0.034 0.966 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.377 0.623 50 H 0.028 0.972 51 H 0.058 0.942 52 H 0.069 0.931 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 21.646 -4.730 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.032 3.968 3 H 0.114 0.886 4 O -0.321 6.321 5 C -0.031 4.031 6 C -0.181 4.181 7 C -0.109 4.109 8 C -0.198 4.198 9 C 0.302 3.698 10 O -0.443 6.443 11 N -0.333 5.333 12 C -0.023 4.023 13 C -0.169 4.169 14 C 0.069 3.931 15 N -0.325 5.325 16 C -0.336 4.336 17 H 0.049 0.951 18 C -0.222 4.222 19 N -0.606 5.606 20 Si 0.769 3.231 21 H -0.205 1.205 22 H -0.252 1.252 23 H -0.178 1.178 24 C -0.011 4.011 25 C -0.014 4.014 26 O -0.385 6.385 27 C -0.172 4.172 28 C -0.001 4.001 29 H 0.042 0.958 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.130 0.870 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.102 0.898 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.224 0.776 50 H 0.047 0.953 51 H 0.077 0.923 52 H 0.087 0.913 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.297 21.520 -4.147 23.434 hybrid contribution -0.515 -1.474 -0.441 1.622 sum 7.782 20.046 -4.588 21.987 Atomic orbital electron populations 1.22261 0.93643 1.01395 0.99997 1.22853 0.95343 0.95762 0.82880 0.88553 1.88900 1.41034 1.68270 1.33890 1.23742 0.87652 0.97186 0.94477 1.23371 1.00519 0.96476 0.97735 1.22116 0.94620 0.97684 0.96450 1.22113 0.99456 0.98432 0.99837 1.21007 0.90632 0.78006 0.80186 1.90906 1.25866 1.60446 1.67120 1.48322 1.08399 1.51468 1.25140 1.22507 0.82060 0.94593 1.03150 1.22255 1.00042 0.94921 0.99662 1.20591 0.92172 0.82946 0.97382 1.44208 1.82227 1.01874 1.04214 1.18225 1.26775 0.98019 0.90600 0.95119 1.26003 1.00149 0.96697 0.99336 1.70002 1.45378 1.03992 1.41274 0.85999 0.79232 0.77572 0.80319 1.20514 1.25217 1.17809 1.21596 0.94242 0.98118 0.87191 1.22842 0.94520 0.92450 0.91584 1.86848 1.24443 1.64923 1.62283 1.22216 0.99656 0.94880 1.00495 1.21538 0.90238 0.93132 0.95174 0.95797 0.89817 0.93841 0.88711 0.88589 0.86038 0.93184 0.89386 0.91277 0.88796 0.88088 0.86992 0.95148 0.90504 0.89370 0.93748 0.94784 0.89840 0.92837 0.92467 0.77625 0.95342 0.92312 0.91277 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.37 7.77 71.98 0.56 -2.81 16 2 C 0.09 2.09 3.73 30.97 0.12 2.20 16 3 H 0.10 1.75 7.70 -2.39 -0.02 1.74 16 4 O -0.40 -10.63 11.19 -148.98 -1.67 -12.30 16 5 C 0.05 0.86 7.72 72.66 0.56 1.42 16 6 C -0.14 -2.89 4.86 31.89 0.15 -2.73 16 7 C -0.11 -2.15 0.62 -51.94 -0.03 -2.18 16 8 C -0.14 -1.66 7.95 71.98 0.57 -1.09 16 9 C 0.51 14.16 6.27 87.65 0.55 14.71 16 10 O -0.56 -19.43 9.91 -3.03 -0.03 -19.46 16 11 N -0.60 -15.32 2.97 -818.08 -2.43 -17.74 16 12 C 0.10 1.95 4.48 86.51 0.39 2.34 16 13 C -0.13 -3.76 5.31 30.82 0.16 -3.60 16 14 C 0.17 5.76 2.59 45.02 0.12 5.88 16 15 N -0.60 -25.76 1.97 -677.87 -1.34 -27.10 16 16 C -0.21 -11.36 8.47 84.03 0.71 -10.64 16 17 H 0.03 1.95 7.05 -2.91 -0.02 1.93 16 18 C -0.03 -1.64 5.30 84.86 0.45 -1.19 16 19 N -0.96 -62.55 13.97 21.65 0.30 -62.25 16 20 Si 0.94 47.33 25.13 68.60 1.72 49.05 16 21 H -0.28 -13.38 6.49 99.48 0.65 -12.73 16 22 H -0.32 -17.02 7.11 99.48 0.71 -16.31 16 23 H -0.25 -11.84 7.11 99.48 0.71 -11.14 16 24 C 0.11 4.34 4.64 86.38 0.40 4.74 16 25 C 0.07 2.06 7.38 71.98 0.53 2.59 16 26 O -0.58 -22.22 13.41 -148.98 -2.00 -24.22 16 27 C -0.13 -4.66 5.31 30.67 0.16 -4.50 16 28 C 0.12 3.39 6.44 86.36 0.56 3.95 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 2.44 6.27 -17.51 -0.11 2.33 16 31 H 0.04 1.56 6.41 -7.87 -0.05 1.51 16 32 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.12 1.68 6.35 -2.39 -0.02 1.67 16 35 H 0.05 1.39 7.86 -2.39 -0.02 1.38 16 36 H 0.09 0.83 5.12 -2.39 -0.01 0.82 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 1.37 8.08 -2.39 -0.02 1.35 16 40 H 0.11 1.76 2.64 -2.39 -0.01 1.76 16 41 H 0.03 1.15 7.07 -2.39 -0.02 1.13 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.09 2.30 7.86 -2.39 -0.02 2.28 16 44 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 45 H 0.03 1.56 3.39 -2.38 -0.01 1.55 16 46 H 0.08 2.59 8.02 -2.39 -0.02 2.57 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.38 9.97 9.12 -74.06 -0.68 9.30 16 50 H 0.03 1.25 7.71 -2.39 -0.02 1.23 16 51 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.07 2.18 7.00 -2.39 -0.02 2.16 16 53 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -81.77 385.44 0.58 -81.19 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.05 Total: 23.74 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.96 Total: 9.07 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.46 Total: -107.09 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -3.69 Total: -55.98 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.72 Total: 49.05 kcal Total: -81.77 0.58 -81.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098438878.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.203 kcal (2) G-P(sol) polarization free energy of solvation -81.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds