Wall clock time and date at job start Tue Mar 31 2020 23:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.98573 * 2 1 4 4 O 1.43745 * 109.88048 * 238.92122 * 2 1 3 5 5 C 1.44385 * 106.97376 * 214.05846 * 4 2 1 6 6 C 1.54994 * 103.48704 * 40.05867 * 5 4 2 7 7 C 1.54097 * 109.87947 * 121.08329 * 2 1 3 8 8 C 1.53002 * 110.60107 * 2.72747 * 7 2 1 9 9 C 1.50701 * 110.49196 * 240.13443 * 7 2 1 10 10 O 1.21282 * 119.99700 * 9.34382 * 9 7 2 11 11 N 1.34769 * 120.00179 * 189.35330 * 9 7 2 12 12 C 1.46923 * 120.63213 * 175.17291 * 11 9 7 13 13 C 1.53192 * 108.77577 * 233.62891 * 12 11 9 14 14 C 1.53045 * 109.31255 * 305.35994 * 13 12 11 15 15 N 1.46495 * 109.45854 * 181.38508 * 14 13 12 16 16 C 1.36936 * 120.00527 * 299.97238 * 15 14 13 17 17 H 1.08005 * 119.99775 * 322.73840 * 16 15 14 18 18 C 1.38809 * 120.00357 * 142.73054 * 16 15 14 19 19 N 1.31622 * 120.00143 * 160.04545 * 18 16 15 20 20 Si 1.86803 * 119.99715 * 340.04366 * 18 16 15 21 21 H 1.48509 * 109.46623 * 92.49029 * 20 18 16 22 22 H 1.48503 * 109.47065 * 212.48400 * 20 18 16 23 23 H 1.48496 * 109.47182 * 332.48859 * 20 18 16 24 24 C 1.46503 * 119.99690 * 119.98009 * 15 14 13 25 25 C 1.52994 * 109.47341 * 83.77346 * 24 15 14 26 26 O 1.42900 * 109.47302 * 65.30707 * 25 24 15 27 27 C 1.53046 * 109.52502 * 61.37489 * 14 13 12 28 28 C 1.46926 * 120.63348 * 355.19070 * 11 9 7 29 29 H 1.09001 * 109.47856 * 298.91056 * 1 2 3 30 30 H 1.09004 * 109.47472 * 58.91399 * 1 2 3 31 31 H 1.09004 * 109.47185 * 178.91008 * 1 2 3 32 32 H 1.09000 * 110.61414 * 281.56262 * 5 4 2 33 33 H 1.08994 * 110.75018 * 158.62911 * 5 4 2 34 34 H 1.09000 * 110.90627 * 204.77207 * 6 5 4 35 35 H 1.09000 * 110.93580 * 81.19473 * 6 5 4 36 36 H 1.08997 * 109.47247 * 303.40423 * 8 7 2 37 37 H 1.09005 * 109.46854 * 63.40424 * 8 7 2 38 38 H 1.09001 * 109.46629 * 183.39859 * 8 7 2 39 39 H 1.08994 * 109.59085 * 113.83999 * 12 11 9 40 40 H 1.09003 * 109.70469 * 353.48421 * 12 11 9 41 41 H 1.08997 * 109.50082 * 185.41364 * 13 12 11 42 42 H 1.08998 * 109.52908 * 65.32990 * 13 12 11 43 43 H 1.08991 * 109.46114 * 301.36018 * 14 13 12 44 44 H 0.96998 * 119.99421 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.46929 * 203.76966 * 24 15 14 46 46 H 1.08994 * 109.46781 * 323.76810 * 24 15 14 47 47 H 1.09006 * 109.47199 * 185.30663 * 25 24 15 48 48 H 1.08998 * 109.47413 * 305.30320 * 25 24 15 49 49 H 0.96700 * 113.99912 * 180.02562 * 26 25 24 50 50 H 1.09005 * 109.49846 * 58.57393 * 27 14 13 51 51 H 1.08992 * 109.49680 * 178.67947 * 27 14 13 52 52 H 1.08993 * 109.58893 * 246.16644 * 28 11 9 53 53 H 1.09009 * 109.58325 * 6.43984 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9025 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1577 5 6 3.2380 -1.3640 -0.7648 6 6 2.9196 -1.8913 0.6575 7 6 2.0539 -0.7482 1.2411 8 6 0.8917 -1.3191 2.0561 9 6 2.8944 0.1675 2.0933 10 8 2.9333 1.3552 1.8510 11 7 3.6029 -0.3334 3.1244 12 6 4.5083 0.5266 3.8986 13 6 5.8975 -0.1184 3.9263 14 6 5.7810 -1.5486 4.4586 15 7 7.1122 -2.1573 4.5176 16 6 7.8561 -2.2893 3.3755 17 1 7.3725 -2.5356 2.4416 18 6 9.2314 -2.1065 3.4178 19 7 9.9906 -2.5993 2.4621 20 14 10.0048 -1.1610 4.8311 21 1 10.4008 -2.1095 5.9031 22 1 11.2055 -0.4361 4.3433 23 1 9.0230 -0.1862 5.3704 24 6 7.6477 -2.6249 5.7986 25 6 7.1227 -4.0326 6.0874 26 8 7.6391 -4.9426 5.1141 27 6 4.8858 -2.3696 3.5276 28 6 3.4850 -1.7501 3.4957 29 1 -0.3635 0.4968 0.8996 30 1 -0.3634 0.5306 -0.8801 31 1 -0.3634 -1.0275 -0.0195 32 1 4.0684 -0.6586 -0.7356 33 1 3.4613 -2.1903 -1.4396 34 1 3.8332 -2.0223 1.2373 35 1 2.3543 -2.8221 0.6103 36 1 0.2102 -0.5138 2.3304 37 1 0.3583 -2.0590 1.4592 38 1 1.2786 -1.7912 2.9591 39 1 4.1330 0.6296 4.9167 40 1 4.5710 1.5093 3.4311 41 1 6.5541 0.4594 4.5767 42 1 6.3102 -0.1382 2.9176 43 1 5.3457 -1.5298 5.4576 44 1 10.9516 -2.4718 2.4920 45 1 8.7365 -2.6458 5.7513 46 1 7.3314 -1.9490 6.5930 47 1 7.4439 -4.3433 7.0817 48 1 6.0337 -4.0308 6.0415 49 1 7.3465 -5.8562 5.2357 50 1 5.3075 -2.3678 2.5224 51 1 4.8221 -3.3940 3.8942 52 1 3.0261 -1.8328 4.4808 53 1 2.8699 -2.2703 2.7613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098438879.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:32 Heat of formation + Delta-G solvation = -112.510416 kcal Electronic energy + Delta-G solvation = -33042.237533 eV Core-core repulsion = 28914.396457 eV Total energy + Delta-G solvation = -4127.841076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.30566 -40.09019 -39.02478 -37.75525 -36.40648 -35.25319 -33.84218 -32.90349 -32.32426 -31.64711 -29.62365 -28.62330 -27.14699 -26.22862 -24.79760 -24.23603 -23.51356 -22.96028 -22.03201 -20.89092 -19.84917 -18.40420 -18.26470 -18.01243 -17.57468 -17.12458 -16.93783 -16.55770 -16.27238 -15.97495 -15.81719 -15.42958 -15.23191 -14.98944 -14.87477 -14.68915 -14.51667 -14.24255 -14.18607 -13.78650 -13.73924 -13.52077 -13.25772 -13.20447 -12.97445 -12.84662 -12.63576 -12.47587 -12.32483 -12.19356 -12.17223 -12.05108 -11.89355 -11.82348 -11.76039 -11.62754 -11.34260 -11.17473 -10.80232 -10.65982 -10.59836 -10.45973 -9.66648 -8.65355 -8.06082 -5.42343 1.29560 1.40432 1.48904 1.49766 1.95130 2.48935 2.78883 3.11710 3.30225 3.35577 3.41542 3.63617 3.75056 3.83718 3.94766 4.06084 4.11899 4.18004 4.19083 4.30269 4.40989 4.41872 4.47102 4.51956 4.56806 4.59721 4.63151 4.67027 4.69483 4.74151 4.77192 4.79243 4.81552 4.83625 4.90321 4.91822 5.01316 5.02912 5.10653 5.14072 5.17545 5.18232 5.38298 5.44127 5.55651 5.62927 5.84866 6.06365 6.29716 6.38417 7.07252 7.09592 7.23937 7.77331 8.14871 9.14838 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016063 B = 0.003517 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.760182 B = 7958.973096 C = 8096.577271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.056 0.944 4 O -0.386 6.386 5 C 0.040 3.960 6 C -0.149 4.149 7 C -0.105 4.105 8 C -0.142 4.142 9 C 0.522 3.478 10 O -0.586 6.586 11 N -0.600 5.600 12 C 0.121 3.879 13 C -0.133 4.133 14 C 0.175 3.825 15 N -0.603 5.603 16 C -0.205 4.205 17 H 0.037 0.963 18 C -0.028 4.028 19 N -0.960 5.960 20 Si 0.937 3.063 21 H -0.281 1.281 22 H -0.323 1.323 23 H -0.253 1.253 24 C 0.114 3.886 25 C 0.065 3.935 26 O -0.579 6.579 27 C -0.131 4.131 28 C 0.099 3.901 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.088 0.912 44 H 0.253 0.747 45 H 0.034 0.966 46 H 0.082 0.918 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.377 0.623 50 H 0.037 0.963 51 H 0.079 0.921 52 H 0.101 0.899 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.916 -1.924 6.235 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.074 0.926 4 O -0.305 6.305 5 C -0.036 4.036 6 C -0.186 4.186 7 C -0.108 4.108 8 C -0.199 4.199 9 C 0.311 3.689 10 O -0.467 6.467 11 N -0.331 5.331 12 C -0.002 4.002 13 C -0.173 4.173 14 C 0.070 3.930 15 N -0.325 5.325 16 C -0.336 4.336 17 H 0.054 0.946 18 C -0.222 4.222 19 N -0.607 5.607 20 Si 0.768 3.232 21 H -0.209 1.209 22 H -0.253 1.253 23 H -0.177 1.177 24 C -0.011 4.011 25 C -0.014 4.014 26 O -0.384 6.384 27 C -0.171 4.171 28 C -0.022 4.022 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.133 0.867 34 H 0.103 0.897 35 H 0.139 0.861 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.224 0.776 50 H 0.056 0.944 51 H 0.098 0.902 52 H 0.119 0.881 53 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -21.567 -0.759 5.676 22.315 hybrid contribution 1.708 0.212 0.362 1.759 sum -19.859 -0.547 6.038 20.764 Atomic orbital electron populations 1.21995 0.91013 1.03972 1.02877 1.22812 0.97034 0.95188 0.83010 0.92625 1.88841 1.39791 1.67988 1.33899 1.23607 0.86851 0.96505 0.96685 1.23574 1.00795 0.98532 0.95710 1.22080 0.97318 0.95363 0.96040 1.22225 0.95350 1.02169 1.00130 1.20792 0.79646 0.88260 0.80239 1.90634 1.66443 1.18374 1.71219 1.48124 1.42156 1.11608 1.31193 1.21571 0.88450 0.93633 0.96519 1.22230 0.95673 0.98450 1.00907 1.20571 0.84703 0.89796 0.97974 1.44199 1.16300 1.68316 1.03658 1.18281 0.88751 1.38089 0.88455 0.94583 1.25949 0.97505 1.00082 0.98669 1.69991 1.04354 1.48555 1.37772 0.86001 0.77200 0.79757 0.80210 1.20911 1.25344 1.17708 1.21578 0.97552 0.93739 0.88245 1.22837 0.97623 0.90762 0.90202 1.86841 1.74985 1.21609 1.55012 1.22226 0.94554 1.00036 1.00255 1.22411 0.97310 0.79103 1.03425 0.89885 0.92204 0.89793 0.94714 0.86722 0.89730 0.86149 0.90785 0.88589 0.89810 0.88725 0.91426 0.92073 0.94936 0.89404 0.93778 0.94806 0.89979 0.92918 0.92350 0.77582 0.94426 0.90209 0.88062 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.39 71.98 0.60 -1.88 16 2 C 0.08 1.94 3.65 30.96 0.11 2.05 16 3 H 0.06 1.77 6.49 -2.38 -0.02 1.76 16 4 O -0.39 -10.62 11.19 -148.98 -1.67 -12.28 16 5 C 0.04 1.02 7.72 72.66 0.56 1.58 16 6 C -0.15 -3.17 4.73 31.89 0.15 -3.02 16 7 C -0.10 -2.28 0.62 -51.94 -0.03 -2.31 16 8 C -0.14 -1.89 6.95 71.98 0.50 -1.39 16 9 C 0.52 15.02 6.49 87.66 0.57 15.59 16 10 O -0.59 -21.64 14.74 -3.04 -0.04 -21.68 16 11 N -0.60 -15.48 2.89 -818.92 -2.37 -17.84 16 12 C 0.12 3.38 6.41 86.36 0.55 3.94 16 13 C -0.13 -4.55 5.31 30.67 0.16 -4.39 16 14 C 0.18 5.64 2.59 45.02 0.12 5.75 16 15 N -0.60 -25.22 1.99 -677.90 -1.35 -26.57 16 16 C -0.21 -11.09 8.55 84.03 0.72 -10.37 16 17 H 0.04 2.22 7.03 -2.91 -0.02 2.20 16 18 C -0.03 -1.63 5.31 84.86 0.45 -1.18 16 19 N -0.96 -61.71 13.97 21.65 0.30 -61.40 16 20 Si 0.94 46.84 24.97 68.60 1.71 48.56 16 21 H -0.28 -13.54 6.57 99.48 0.65 -12.89 16 22 H -0.32 -16.96 7.11 99.48 0.71 -16.25 16 23 H -0.25 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.11 4.30 4.57 86.38 0.40 4.70 16 25 C 0.07 2.01 7.38 71.98 0.53 2.54 16 26 O -0.58 -21.74 13.44 -148.98 -2.00 -23.74 16 27 C -0.13 -3.69 5.07 30.67 0.16 -3.53 16 28 C 0.10 1.96 4.10 86.36 0.35 2.31 16 29 H 0.08 1.25 6.76 -2.39 -0.02 1.23 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 31 H 0.08 1.16 6.82 -2.39 -0.02 1.14 16 32 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.08 2.10 4.64 -2.39 -0.01 2.09 16 35 H 0.12 1.82 7.80 -2.39 -0.02 1.81 16 36 H 0.07 0.95 6.52 -2.39 -0.02 0.93 16 37 H 0.10 0.91 6.94 -2.38 -0.02 0.89 16 38 H 0.08 0.90 5.36 -2.39 -0.01 0.89 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.16 7.04 -2.39 -0.02 2.14 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.03 1.38 7.71 -2.39 -0.02 1.37 16 43 H 0.09 2.24 7.87 -2.39 -0.02 2.23 16 44 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.03 1.53 3.30 -2.39 -0.01 1.53 16 46 H 0.08 2.53 8.05 -2.39 -0.02 2.51 16 47 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 48 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 49 H 0.38 9.71 9.12 -74.06 -0.68 9.03 16 50 H 0.04 1.35 5.94 -2.38 -0.01 1.34 16 51 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.11 1.82 3.26 -2.38 -0.01 1.81 16 Total: -1.00 -80.49 384.07 0.69 -79.81 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.20 Total: 24.79 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 5.90 Total: 10.38 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -3.42 Total: -105.82 kcal Atomic # 8 Polarization: -53.99 SS G_CDS: -3.71 Total: -57.71 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.71 Total: 48.56 kcal Total: -80.49 0.69 -79.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098438879.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.704 kcal (2) G-P(sol) polarization free energy of solvation -80.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds