Wall clock time and date at job start Tue Mar 31 2020 23:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.89663 * 2 1 4 4 C 1.54376 * 109.82806 * 120.93552 * 2 1 3 5 5 C 1.55314 * 102.25115 * 140.86612 * 4 2 1 6 6 C 1.54941 * 100.94204 * 325.86799 * 5 4 2 7 7 H 1.09001 * 110.39203 * 277.48461 * 6 5 4 8 8 C 1.52993 * 110.31085 * 155.36103 * 6 5 4 9 9 C 1.50698 * 109.47397 * 177.83468 * 8 6 5 10 10 O 1.21286 * 120.00101 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99995 * 179.97438 * 9 8 6 12 12 C 1.46928 * 120.63079 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.77096 * 233.58690 * 12 11 9 14 14 C 1.53042 * 109.31017 * 305.36270 * 13 12 11 15 15 N 1.46504 * 109.45785 * 181.39074 * 14 13 12 16 16 C 1.36937 * 119.99830 * 300.00093 * 15 14 13 17 17 H 1.08007 * 119.99992 * 323.11258 * 16 15 14 18 18 C 1.38808 * 120.00177 * 143.11518 * 16 15 14 19 19 N 1.31617 * 120.00167 * 160.28655 * 18 16 15 20 20 Si 1.86795 * 120.00049 * 340.28523 * 18 16 15 21 21 H 1.48505 * 109.46938 * 95.24370 * 20 18 16 22 22 H 1.48500 * 109.47350 * 215.24496 * 20 18 16 23 23 H 1.48500 * 109.47023 * 335.24955 * 20 18 16 24 24 C 1.46500 * 120.00180 * 119.99862 * 15 14 13 25 25 C 1.53008 * 109.46754 * 86.91410 * 24 15 14 26 26 O 1.42899 * 109.47307 * 63.65862 * 25 24 15 27 27 C 1.53035 * 109.54136 * 61.36827 * 14 13 12 28 28 C 1.46924 * 120.62747 * 179.97438 * 11 9 8 29 29 O 1.43236 * 109.82517 * 239.06695 * 2 1 3 30 30 H 1.08997 * 109.47582 * 179.47759 * 1 2 3 31 31 H 1.09003 * 109.47150 * 299.47855 * 1 2 3 32 32 H 1.09004 * 109.47195 * 59.47322 * 1 2 3 33 33 H 1.08997 * 110.84725 * 259.05596 * 4 2 1 34 34 H 1.09005 * 110.85169 * 22.47651 * 4 2 1 35 35 H 1.09001 * 111.12187 * 207.94435 * 5 4 2 36 36 H 1.09000 * 111.12242 * 83.78676 * 5 4 2 37 37 H 1.08997 * 109.47560 * 57.82837 * 8 6 5 38 38 H 1.09006 * 109.47084 * 297.82793 * 8 6 5 39 39 H 1.09005 * 109.58412 * 113.79951 * 12 11 9 40 40 H 1.08997 * 109.58563 * 353.37301 * 12 11 9 41 41 H 1.09005 * 109.49543 * 185.41630 * 13 12 11 42 42 H 1.08993 * 109.49888 * 65.31353 * 13 12 11 43 43 H 1.09002 * 109.46239 * 301.34537 * 14 13 12 44 44 H 0.96994 * 120.00444 * 180.02562 * 19 18 16 45 45 H 1.08997 * 109.46919 * 206.91227 * 24 15 14 46 46 H 1.09000 * 109.47231 * 326.91646 * 24 15 14 47 47 H 1.08999 * 109.46588 * 183.65334 * 25 24 15 48 48 H 1.08997 * 109.46985 * 303.65559 * 25 24 15 49 49 H 0.96693 * 114.00030 * 180.02562 * 26 25 24 50 50 H 1.09001 * 109.49707 * 58.58487 * 27 14 13 51 51 H 1.08998 * 109.49864 * 178.67805 * 27 14 13 52 52 H 1.08999 * 109.58902 * 6.63254 * 28 11 9 53 53 H 1.09000 * 109.70657 * 246.27037 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0537 -0.7466 1.2457 5 6 3.2729 -1.5223 0.6766 6 6 2.7746 -1.8445 -0.7547 7 1 2.1404 -2.7309 -0.7455 8 6 3.9624 -2.0523 -1.6963 9 6 3.4577 -2.4163 -3.0688 10 8 2.2653 -2.5017 -3.2736 11 7 4.3314 -2.6471 -4.0688 12 6 5.7788 -2.5482 -3.8360 13 6 6.3798 -1.5899 -4.8691 14 6 5.9999 -2.0587 -6.2756 15 7 6.6008 -1.1634 -7.2674 16 6 6.2859 0.1693 -7.2664 17 1 5.2808 0.4865 -7.0307 18 6 7.2586 1.1125 -7.5683 19 7 6.9065 2.3225 -7.9480 20 14 9.0671 0.6644 -7.4359 21 1 9.5719 0.2447 -8.7679 22 1 9.8361 1.8439 -6.9642 23 1 9.2311 -0.4519 -6.4703 24 6 7.5384 -1.6938 -8.2602 25 6 6.7601 -2.2079 -9.4731 26 8 6.0804 -1.1183 -10.0997 27 6 4.4773 -2.0397 -6.4276 28 6 3.8546 -3.0035 -5.4120 29 8 2.0158 -0.6926 -1.1558 30 1 -0.3634 -1.0276 -0.0094 31 1 -0.3633 0.5057 0.8946 32 1 -0.3634 0.5220 -0.8853 33 1 2.3671 -0.0426 2.0165 34 1 1.2998 -1.4324 1.6324 35 1 3.4571 -2.4350 1.2433 36 1 4.1620 -0.8922 0.6505 37 1 4.5917 -2.8566 -1.3154 38 1 4.5445 -1.1326 -1.7555 39 1 6.2341 -3.5328 -3.9425 40 1 5.9621 -2.1651 -2.8322 41 1 7.4653 -1.5814 -4.7693 42 1 5.9908 -0.5853 -4.7031 43 1 6.3678 -3.0728 -6.4321 44 1 7.5861 2.9815 -8.1593 45 1 8.2204 -0.9037 -8.5744 46 1 8.1085 -2.5123 -7.8207 47 1 7.4519 -2.6612 -10.1831 48 1 6.0325 -2.9520 -9.1491 49 1 5.5650 -1.3715 -10.8777 50 1 4.1062 -1.0308 -6.2469 51 1 4.2085 -2.3512 -7.4370 52 1 2.7683 -2.9208 -5.4481 53 1 4.1513 -4.0254 -5.6483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098467399.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:41 Heat of formation + Delta-G solvation = -131.519612 kcal Electronic energy + Delta-G solvation = -31644.840506 eV Core-core repulsion = 27516.175129 eV Total energy + Delta-G solvation = -4128.665377 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.34829 -40.31876 -39.11606 -37.70049 -36.27623 -34.10478 -33.71859 -33.16018 -32.51850 -31.98055 -30.08044 -29.48870 -26.77188 -25.66388 -24.50515 -24.02301 -22.81660 -22.36681 -21.86616 -21.19018 -19.88618 -18.46473 -18.35435 -17.95104 -17.85247 -17.16457 -16.92388 -16.65029 -16.31794 -16.05782 -15.41142 -15.25450 -15.12886 -14.89171 -14.66141 -14.54887 -14.36514 -14.27269 -14.19157 -13.83821 -13.63363 -13.46471 -13.26909 -13.14971 -12.86068 -12.79671 -12.72258 -12.54021 -12.48190 -12.22495 -12.14475 -11.94628 -11.83244 -11.70291 -11.66560 -11.65863 -11.30791 -11.20960 -10.72230 -10.65053 -10.48490 -10.41626 -9.55760 -8.65895 -8.03668 -5.41744 1.33984 1.42624 1.53998 1.71214 2.12053 2.51955 2.88798 3.12251 3.35522 3.56915 3.59609 3.74466 3.85710 3.91225 3.96986 4.14226 4.18104 4.23349 4.25952 4.31030 4.40413 4.42247 4.46481 4.51203 4.54091 4.60365 4.63154 4.66936 4.67307 4.75320 4.79516 4.81823 4.87050 4.90099 4.92251 4.93260 5.06503 5.07819 5.08871 5.13530 5.20890 5.24616 5.36562 5.46701 5.59802 5.67798 6.07573 6.28183 6.30587 6.52152 7.09117 7.19958 7.27649 7.78560 8.14880 9.17785 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002855 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.911856 B = 9804.156469 C =10314.468618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.058 3.942 3 H 0.074 0.926 4 C -0.143 4.143 5 C -0.142 4.142 6 C 0.089 3.911 7 H 0.061 0.939 8 C -0.135 4.135 9 C 0.506 3.494 10 O -0.584 6.584 11 N -0.612 5.612 12 C 0.115 3.885 13 C -0.138 4.138 14 C 0.176 3.824 15 N -0.603 5.603 16 C -0.210 4.210 17 H 0.021 0.979 18 C -0.030 4.030 19 N -0.965 5.965 20 Si 0.951 3.049 21 H -0.287 1.287 22 H -0.320 1.320 23 H -0.240 1.240 24 C 0.118 3.882 25 C 0.061 3.939 26 O -0.579 6.579 27 C -0.126 4.126 28 C 0.123 3.877 29 O -0.401 6.401 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.091 0.909 44 H 0.254 0.746 45 H 0.032 0.968 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.375 0.625 50 H 0.019 0.981 51 H 0.062 0.938 52 H 0.063 0.937 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -16.493 17.646 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 H 0.092 0.908 4 C -0.180 4.180 5 C -0.179 4.179 6 C 0.032 3.968 7 H 0.079 0.921 8 C -0.174 4.174 9 C 0.296 3.704 10 O -0.464 6.464 11 N -0.345 5.345 12 C -0.007 4.007 13 C -0.178 4.178 14 C 0.071 3.929 15 N -0.325 5.325 16 C -0.341 4.341 17 H 0.039 0.961 18 C -0.224 4.224 19 N -0.611 5.611 20 Si 0.781 3.219 21 H -0.215 1.215 22 H -0.250 1.250 23 H -0.164 1.164 24 C -0.007 4.007 25 C -0.019 4.019 26 O -0.384 6.384 27 C -0.166 4.166 28 C 0.000 4.000 29 O -0.322 6.322 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.163 0.837 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.111 0.889 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.222 0.778 50 H 0.038 0.962 51 H 0.081 0.919 52 H 0.081 0.919 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.211 -16.028 17.786 24.044 hybrid contribution 0.097 0.732 -1.242 1.445 sum -2.114 -15.297 16.543 22.631 Atomic orbital electron populations 1.22114 0.94992 1.02143 1.02330 1.22948 0.94716 0.96520 0.85759 0.90799 1.23169 0.97907 0.99944 0.97028 1.23326 0.98745 1.02471 0.93398 1.22808 0.91163 0.89154 0.93719 0.92109 1.22002 0.99289 1.05468 0.90643 1.21252 0.85761 0.75515 0.87853 1.90668 1.17827 1.53524 1.84376 1.48299 1.07805 1.68572 1.09825 1.21990 0.77881 1.00858 0.99980 1.22259 1.00855 0.98829 0.95845 1.20561 0.90915 0.93479 0.87970 1.44184 1.52274 1.04349 1.31713 1.18198 0.92523 0.82128 1.41217 0.96090 1.26009 1.02090 0.94821 0.99488 1.70029 1.34143 1.06834 1.50112 0.85763 0.81564 0.76658 0.77933 1.21512 1.25032 1.16351 1.21592 0.92152 0.97605 0.89360 1.22921 0.95420 0.88544 0.95030 1.86864 1.68311 1.36127 1.47130 1.22159 0.98274 0.97854 0.98298 1.21492 0.98996 0.98516 0.81027 1.88598 1.71253 1.40824 1.31481 0.92827 0.89321 0.93945 0.88127 0.89683 0.87256 0.89208 0.83668 0.87806 0.87938 0.87572 0.90586 0.94839 0.89142 0.93705 0.94971 0.88894 0.92639 0.93075 0.77833 0.96220 0.91948 0.91859 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.44 71.98 0.68 -2.54 16 2 C 0.06 1.25 4.16 31.06 0.13 1.38 16 3 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.14 -1.96 6.55 31.86 0.21 -1.75 16 5 C -0.14 -1.87 6.57 32.05 0.21 -1.66 16 6 C 0.09 1.98 2.92 31.26 0.09 2.07 16 7 H 0.06 1.48 8.00 -2.39 -0.02 1.46 16 8 C -0.13 -2.79 3.79 29.85 0.11 -2.68 16 9 C 0.51 15.45 7.60 87.66 0.67 16.11 16 10 O -0.58 -23.20 14.95 8.29 0.12 -23.07 16 11 N -0.61 -17.12 2.97 -818.81 -2.43 -19.55 16 12 C 0.12 2.49 6.34 86.36 0.55 3.04 16 13 C -0.14 -4.39 5.31 30.67 0.16 -4.23 16 14 C 0.18 6.10 2.59 45.02 0.12 6.22 16 15 N -0.60 -26.62 2.00 -677.87 -1.36 -27.98 16 16 C -0.21 -11.98 8.34 84.03 0.70 -11.28 16 17 H 0.02 1.42 7.03 -2.91 -0.02 1.40 16 18 C -0.03 -1.81 5.34 84.86 0.45 -1.36 16 19 N -0.96 -63.71 13.97 21.65 0.30 -63.41 16 20 Si 0.95 46.78 24.82 68.60 1.70 48.48 16 21 H -0.29 -13.83 6.70 99.48 0.67 -13.16 16 22 H -0.32 -16.34 7.11 99.48 0.71 -15.63 16 23 H -0.24 -10.39 7.11 99.48 0.71 -9.69 16 24 C 0.12 4.60 4.74 86.38 0.41 5.01 16 25 C 0.06 2.06 7.40 71.98 0.53 2.59 16 26 O -0.58 -24.25 13.22 -148.98 -1.97 -26.22 16 27 C -0.13 -4.59 5.30 30.68 0.16 -4.43 16 28 C 0.12 3.68 6.43 86.38 0.56 4.23 16 29 O -0.40 -12.10 10.07 -137.65 -1.39 -13.49 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.03 7.85 -2.38 -0.02 1.01 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.87 16 36 H 0.09 1.05 8.06 -2.39 -0.02 1.03 16 37 H 0.15 1.70 7.94 -2.39 -0.02 1.68 16 38 H 0.10 2.14 7.69 -2.38 -0.02 2.13 16 39 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.11 1.74 5.93 -2.39 -0.01 1.72 16 41 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.03 1.36 7.71 -2.39 -0.02 1.34 16 43 H 0.09 2.46 7.83 -2.39 -0.02 2.45 16 44 H 0.25 16.06 8.31 -92.71 -0.77 15.28 16 45 H 0.03 1.47 3.12 -2.39 -0.01 1.47 16 46 H 0.09 2.83 7.99 -2.39 -0.02 2.81 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.38 11.40 9.12 -74.06 -0.68 10.73 16 50 H 0.02 0.90 7.05 -2.39 -0.02 0.88 16 51 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.06 2.18 7.00 -2.39 -0.02 2.17 16 53 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -88.31 404.07 0.90 -87.41 By element: Atomic # 1 Polarization: 26.91 SS G_CDS: 0.17 Total: 27.09 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.74 Total: 10.73 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -3.49 Total: -110.94 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -3.23 Total: -62.78 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.70 Total: 48.48 kcal Total: -88.31 0.90 -87.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098467399.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.106 kcal (2) G-P(sol) polarization free energy of solvation -88.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds