Wall clock time and date at job start Tue Mar 31 2020 23:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.55458 * 2 1 4 4 C 1.54996 * 110.61864 * 236.95354 * 2 1 3 5 5 C 1.54811 * 102.09048 * 204.47804 * 4 2 1 6 6 C 1.54098 * 104.19137 * 20.87577 * 5 4 2 7 7 H 1.09002 * 109.87824 * 242.60987 * 6 5 4 8 8 C 1.52997 * 109.88077 * 121.45714 * 6 5 4 9 9 C 1.50697 * 109.47499 * 175.71878 * 8 6 5 10 10 O 1.21283 * 119.99735 * 359.97438 * 9 8 6 11 11 N 1.34773 * 120.00034 * 180.02562 * 9 8 6 12 12 C 1.46927 * 120.63110 * 359.71214 * 11 9 8 13 13 C 1.53622 * 108.54079 * 126.37772 * 12 11 9 14 14 C 1.53035 * 109.24573 * 54.85180 * 13 12 11 15 15 N 1.46505 * 109.45981 * 178.49135 * 14 13 12 16 16 C 1.36930 * 120.00075 * 60.06939 * 15 14 13 17 17 H 1.08001 * 120.00308 * 326.29622 * 16 15 14 18 18 C 1.38812 * 120.00198 * 146.28921 * 16 15 14 19 19 N 1.31621 * 120.00228 * 337.24051 * 18 16 15 20 20 Si 1.86796 * 120.00103 * 157.23747 * 18 16 15 21 21 H 1.48499 * 109.47183 * 60.00154 * 20 18 16 22 22 H 1.48503 * 109.47213 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47340 * 300.00192 * 20 18 16 24 24 C 1.46497 * 120.00010 * 240.07243 * 15 14 13 25 25 C 1.52999 * 109.47526 * 84.41105 * 24 15 14 26 26 O 1.42905 * 109.46814 * 65.00025 * 25 24 15 27 27 C 1.53033 * 109.54187 * 298.51267 * 14 13 12 28 28 C 1.46931 * 120.62934 * 180.02562 * 11 9 8 29 29 O 1.43742 * 107.29153 * 2.03381 * 6 5 4 30 30 H 1.09004 * 109.47255 * 298.57395 * 1 2 3 31 31 H 1.08997 * 109.47419 * 58.57027 * 1 2 3 32 32 H 1.08994 * 109.47232 * 178.57662 * 1 2 3 33 33 H 1.08999 * 110.90060 * 322.66779 * 4 2 1 34 34 H 1.08989 * 110.91211 * 86.27864 * 4 2 1 35 35 H 1.09003 * 110.48681 * 262.20210 * 5 4 2 36 36 H 1.09002 * 110.60608 * 139.61314 * 5 4 2 37 37 H 1.09003 * 109.46746 * 295.71977 * 8 6 5 38 38 H 1.09002 * 109.46931 * 55.71195 * 8 6 5 39 39 H 1.09004 * 109.58693 * 246.20332 * 12 11 9 40 40 H 1.08990 * 109.58509 * 6.63120 * 12 11 9 41 41 H 1.09001 * 109.63171 * 294.85776 * 13 12 11 42 42 H 1.09008 * 109.43104 * 174.72723 * 13 12 11 43 43 H 1.08998 * 109.44997 * 58.53071 * 14 13 12 44 44 H 0.96998 * 120.00130 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.47247 * 204.41351 * 24 15 14 46 46 H 1.09008 * 109.47331 * 324.41178 * 24 15 14 47 47 H 1.08997 * 109.47186 * 184.99724 * 25 24 15 48 48 H 1.08998 * 109.47213 * 305.00494 * 25 24 15 49 49 H 0.96700 * 113.99948 * 180.02562 * 26 25 24 50 50 H 1.09004 * 109.49604 * 301.41276 * 27 14 13 51 51 H 1.09003 * 109.50151 * 181.31700 * 27 14 13 52 52 H 1.09001 * 109.58515 * 353.35853 * 28 11 9 53 53 H 1.08993 * 109.58779 * 113.65027 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0758 -0.7911 -1.2160 5 6 3.4794 -1.2178 -0.7217 6 6 3.3839 -1.1242 0.8135 7 1 4.0854 -0.3764 1.1836 8 6 3.6935 -2.4862 1.4380 9 6 3.7009 -2.3603 2.9397 10 8 3.4808 -1.2867 3.4593 11 7 3.9532 -3.4404 3.7053 12 6 4.2166 -4.7486 3.0905 13 6 5.5466 -5.2872 3.6391 14 6 5.4887 -5.3118 5.1681 15 7 6.7415 -5.8585 5.6953 16 6 7.9296 -5.2358 5.4203 17 1 8.0729 -4.7407 4.4712 18 6 8.9501 -5.2408 6.3613 19 7 8.6703 -5.4225 7.6346 20 14 10.7204 -4.9896 5.8208 21 1 10.8522 -3.6684 5.1558 22 1 11.6119 -5.0381 7.0075 23 1 11.1046 -6.0631 4.8694 24 6 6.7232 -7.0715 6.5166 25 6 6.7241 -8.3026 5.6083 26 8 7.9531 -8.3571 4.8811 27 6 5.2914 -3.8890 5.6959 28 6 3.9633 -3.3334 5.1706 29 8 2.0384 -0.7336 1.1348 30 1 -0.3634 0.4915 0.9025 31 1 -0.3634 0.5359 -0.8768 32 1 -0.3633 -1.0273 -0.0255 33 1 1.4549 -1.6626 -1.4233 34 1 2.1509 -0.1507 -2.0947 35 1 4.2406 -0.5348 -1.0989 36 1 3.6998 -2.2402 -1.0286 37 1 2.9315 -3.2053 1.1374 38 1 4.6706 -2.8285 1.0972 39 1 3.4098 -5.4382 3.3390 40 1 4.2844 -4.6369 2.0085 41 1 6.3639 -4.6422 3.3163 42 1 5.7106 -6.2978 3.2648 43 1 4.6559 -5.9372 5.4898 44 1 9.3833 -5.4264 8.2921 45 1 7.6059 -7.0908 7.1558 46 1 5.8261 -7.0775 7.1358 47 1 6.6210 -9.2020 6.2153 48 1 5.8906 -8.2387 4.9088 49 1 8.0232 -9.1139 4.2833 50 1 6.1111 -3.2571 5.3537 51 1 5.2736 -3.9042 6.7856 52 1 3.8641 -2.2876 5.4614 53 1 3.1349 -3.9081 5.5847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098467401.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:50 Heat of formation + Delta-G solvation = -135.304083 kcal Electronic energy + Delta-G solvation = -31454.654571 eV Core-core repulsion = 27325.825087 eV Total energy + Delta-G solvation = -4128.829484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.35124 -40.26004 -38.95904 -37.59409 -36.19162 -34.09273 -33.61012 -33.11813 -32.20229 -31.79945 -30.05930 -29.30238 -26.65516 -25.61170 -24.63840 -23.86980 -22.45969 -22.16614 -21.89900 -21.34851 -19.97229 -18.47781 -18.16095 -17.89213 -17.39836 -16.99291 -16.77435 -16.68775 -16.05166 -16.01388 -15.59282 -15.56943 -15.02325 -14.78591 -14.71244 -14.48649 -14.32450 -14.03679 -13.90972 -13.64634 -13.33634 -13.25426 -13.10345 -12.99891 -12.85962 -12.79361 -12.72068 -12.51255 -12.46754 -12.37678 -12.14204 -11.96218 -11.82124 -11.71121 -11.62116 -11.51512 -11.45380 -11.11206 -10.71304 -10.58513 -10.55254 -10.35137 -9.56490 -8.47833 -7.73669 -5.24941 1.44451 1.48446 1.54191 1.72182 2.09750 2.57810 2.90789 3.36782 3.52925 3.58927 3.66799 3.82000 3.86264 3.98546 4.02469 4.05756 4.19560 4.25543 4.28505 4.34836 4.41321 4.47139 4.56098 4.59091 4.60572 4.61977 4.67046 4.74812 4.78928 4.83949 4.86118 4.91061 4.95588 4.96936 4.97131 5.10161 5.12382 5.14642 5.17699 5.24828 5.26668 5.29981 5.49348 5.61481 5.69955 5.76988 5.88241 6.13475 6.52832 6.54766 7.24296 7.27075 7.30745 8.00966 8.47027 9.24521 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017179 B = 0.002589 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.532037 B =10814.191534 C =11089.254623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 H 0.062 0.938 4 C -0.141 4.141 5 C -0.147 4.147 6 C 0.087 3.913 7 H 0.045 0.955 8 C -0.131 4.131 9 C 0.506 3.494 10 O -0.586 6.586 11 N -0.610 5.610 12 C 0.114 3.886 13 C -0.128 4.128 14 C 0.172 3.828 15 N -0.584 5.584 16 C -0.217 4.217 17 H 0.047 0.953 18 C -0.041 4.041 19 N -0.924 5.924 20 Si 0.942 3.058 21 H -0.283 1.283 22 H -0.299 1.299 23 H -0.283 1.283 24 C 0.133 3.867 25 C 0.071 3.929 26 O -0.576 6.576 27 C -0.120 4.120 28 C 0.123 3.877 29 O -0.390 6.390 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.244 0.756 45 H 0.066 0.934 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.374 0.626 50 H 0.031 0.969 51 H 0.046 0.954 52 H 0.063 0.937 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 0.395 -19.500 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.004 4.004 3 H 0.080 0.920 4 C -0.178 4.178 5 C -0.184 4.184 6 C 0.029 3.971 7 H 0.064 0.936 8 C -0.170 4.170 9 C 0.296 3.704 10 O -0.466 6.466 11 N -0.343 5.343 12 C -0.008 4.008 13 C -0.168 4.168 14 C 0.066 3.934 15 N -0.304 5.304 16 C -0.348 4.348 17 H 0.064 0.936 18 C -0.236 4.236 19 N -0.570 5.570 20 Si 0.773 3.227 21 H -0.210 1.210 22 H -0.226 1.226 23 H -0.210 1.210 24 C 0.007 3.993 25 C -0.009 4.009 26 O -0.381 6.381 27 C -0.160 4.160 28 C -0.001 4.001 29 O -0.310 6.310 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.221 0.779 50 H 0.050 0.950 51 H 0.065 0.935 52 H 0.082 0.918 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.683 1.448 -18.539 24.326 hybrid contribution 1.521 -0.086 0.349 1.563 sum -14.162 1.363 -18.190 23.093 Atomic orbital electron populations 1.21759 0.92408 1.02978 1.02737 1.23375 0.96025 0.95416 0.85539 0.92047 1.23156 0.95665 1.01070 0.97929 1.23021 0.98571 1.04629 0.92191 1.22484 0.84714 0.94508 0.95407 0.93649 1.22018 1.06159 0.99348 0.89517 1.21298 0.75207 0.82882 0.91054 1.90669 1.51040 1.28842 1.76036 1.48286 1.69405 1.10127 1.06506 1.22070 0.96915 0.82753 0.99039 1.22260 0.96645 1.01121 0.96770 1.20528 0.88222 0.91768 0.92909 1.43941 1.01741 1.25238 1.59440 1.18796 0.91132 1.28690 0.96180 0.93551 1.25470 1.01454 1.01990 0.94689 1.70088 1.31341 1.55378 1.00223 0.85724 0.82616 0.77651 0.76720 1.20980 1.22563 1.20998 1.21026 1.00896 0.84497 0.92877 1.22848 0.85594 0.98046 0.94418 1.86784 1.39311 1.51447 1.60564 1.22123 0.95598 0.98939 0.99388 1.21466 0.97302 1.01245 0.80053 1.89007 1.27891 1.73808 1.40271 0.93314 0.88946 0.91857 0.89533 0.88431 0.89646 0.88031 0.85848 0.85380 0.89184 0.87027 0.94056 0.90467 0.91544 0.94660 0.91574 0.93871 0.93891 0.93728 0.77927 0.95016 0.93498 0.91837 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.66 71.98 0.70 -1.44 16 2 C 0.05 0.98 3.98 31.28 0.12 1.11 16 3 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 4 C -0.14 -1.69 6.59 31.90 0.21 -1.48 16 5 C -0.15 -1.95 6.64 31.58 0.21 -1.75 16 6 C 0.09 1.95 2.93 30.96 0.09 2.04 16 7 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 8 C -0.13 -2.70 3.54 29.85 0.11 -2.59 16 9 C 0.51 15.74 7.59 87.66 0.67 16.40 16 10 O -0.59 -23.84 14.91 8.66 0.13 -23.71 16 11 N -0.61 -17.88 2.97 -817.99 -2.43 -20.31 16 12 C 0.11 2.55 6.37 86.51 0.55 3.10 16 13 C -0.13 -3.94 5.32 30.82 0.16 -3.78 16 14 C 0.17 6.45 2.59 45.01 0.12 6.57 16 15 N -0.58 -27.25 2.35 -677.90 -1.59 -28.84 16 16 C -0.22 -11.70 8.06 84.03 0.68 -11.02 16 17 H 0.05 2.56 6.87 -2.91 -0.02 2.54 16 18 C -0.04 -2.31 4.90 84.86 0.42 -1.89 16 19 N -0.92 -55.09 11.36 21.65 0.25 -54.84 16 20 Si 0.94 47.06 29.61 68.60 2.03 49.09 16 21 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 23 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 24 C 0.13 6.01 5.57 86.38 0.48 6.49 16 25 C 0.07 2.52 7.39 71.98 0.53 3.05 16 26 O -0.58 -22.50 13.40 -148.98 -2.00 -24.49 16 27 C -0.12 -4.81 5.31 30.68 0.16 -4.64 16 28 C 0.12 4.09 6.43 86.38 0.56 4.65 16 29 O -0.39 -10.49 10.24 -137.28 -1.41 -11.89 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 33 H 0.09 0.90 8.05 -2.39 -0.02 0.88 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 0.94 7.70 -2.39 -0.02 0.92 16 37 H 0.12 1.92 7.93 -2.39 -0.02 1.90 16 38 H 0.13 2.02 7.70 -2.39 -0.02 2.00 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.11 1.74 5.93 -2.39 -0.01 1.72 16 41 H 0.04 1.50 7.03 -2.39 -0.02 1.49 16 42 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 43 H 0.07 2.24 7.87 -2.39 -0.02 2.22 16 44 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 45 H 0.07 3.61 5.35 -2.39 -0.01 3.59 16 46 H 0.04 1.81 8.04 -2.38 -0.02 1.79 16 47 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.37 10.04 9.12 -74.06 -0.68 9.36 16 50 H 0.03 1.48 7.71 -2.38 -0.02 1.46 16 51 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.06 2.38 7.01 -2.39 -0.02 2.36 16 53 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -78.46 409.30 0.96 -77.50 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.21 Total: 22.68 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 5.76 Total: 14.82 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -3.77 Total: -103.99 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -3.27 Total: -60.09 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -78.46 0.96 -77.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098467401.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.805 kcal (2) G-P(sol) polarization free energy of solvation -78.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds