Wall clock time and date at job start Tue Mar 31 2020 23:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.99068 * 2 1 4 4 C 1.54093 * 109.88069 * 121.09210 * 2 1 3 5 5 C 1.54811 * 104.19002 * 121.45336 * 4 2 1 6 6 C 1.54985 * 102.09148 * 20.87690 * 5 4 2 7 7 H 1.09001 * 110.75532 * 81.54574 * 6 5 4 8 8 C 1.53000 * 110.62150 * 204.47856 * 6 5 4 9 9 C 1.50697 * 109.47473 * 180.52618 * 8 6 5 10 10 O 1.21277 * 120.00013 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00176 * 179.97438 * 9 8 6 12 12 C 1.46928 * 120.62645 * 359.72490 * 11 9 8 13 13 C 1.53622 * 108.54171 * 126.36914 * 12 11 9 14 14 C 1.53037 * 109.24773 * 54.85140 * 13 12 11 15 15 N 1.46502 * 109.45227 * 178.49647 * 14 13 12 16 16 C 1.36933 * 119.99416 * 60.06379 * 15 14 13 17 17 H 1.07999 * 120.00196 * 326.13525 * 16 15 14 18 18 C 1.38810 * 119.99587 * 146.14383 * 16 15 14 19 19 N 1.31618 * 120.00115 * 337.66222 * 18 16 15 20 20 Si 1.86801 * 120.00212 * 157.66900 * 18 16 15 21 21 H 1.48500 * 109.47301 * 59.99353 * 20 18 16 22 22 H 1.48492 * 109.47600 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.46901 * 299.99860 * 20 18 16 24 24 C 1.46500 * 120.00080 * 240.06525 * 15 14 13 25 25 C 1.52998 * 109.47470 * 84.43535 * 24 15 14 26 26 O 1.42896 * 109.46652 * 65.00035 * 25 24 15 27 27 C 1.53038 * 109.53601 * 298.51385 * 14 13 12 28 28 C 1.46917 * 120.63217 * 180.02562 * 11 9 8 29 29 O 1.43748 * 109.87648 * 238.92069 * 2 1 3 30 30 H 1.09001 * 109.47137 * 179.62647 * 1 2 3 31 31 H 1.09000 * 109.46599 * 299.62737 * 1 2 3 32 32 H 1.09001 * 109.47144 * 59.62124 * 1 2 3 33 33 H 1.09005 * 110.48525 * 240.13103 * 4 2 1 34 34 H 1.09000 * 110.48905 * 2.63640 * 4 2 1 35 35 H 1.09006 * 110.90151 * 262.68121 * 5 4 2 36 36 H 1.08997 * 110.90834 * 139.08093 * 5 4 2 37 37 H 1.08998 * 109.47413 * 60.52396 * 8 6 5 38 38 H 1.09004 * 109.46787 * 300.52530 * 8 6 5 39 39 H 1.09010 * 109.58428 * 246.19598 * 12 11 9 40 40 H 1.08996 * 109.58981 * 6.61986 * 12 11 9 41 41 H 1.09000 * 109.63132 * 294.85546 * 13 12 11 42 42 H 1.09007 * 109.45710 * 174.74083 * 13 12 11 43 43 H 1.09005 * 109.45953 * 58.53260 * 14 13 12 44 44 H 0.96998 * 119.99968 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.46748 * 204.44370 * 24 15 14 46 46 H 1.09004 * 109.46960 * 324.43566 * 24 15 14 47 47 H 1.08999 * 109.46846 * 184.99953 * 25 24 15 48 48 H 1.09003 * 109.47095 * 305.00516 * 25 24 15 49 49 H 0.96702 * 113.99761 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.49872 * 301.40699 * 27 14 13 51 51 H 1.09007 * 109.52235 * 181.32941 * 27 14 13 52 52 H 1.08996 * 109.58887 * 353.37830 * 28 11 9 53 53 H 1.09004 * 109.58920 * 113.65756 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0541 -0.7483 1.2409 5 6 2.9196 -1.8915 0.6573 6 6 3.2379 -1.3641 -0.7649 7 1 4.0690 -0.6594 -0.7385 8 6 3.5473 -2.5243 -1.7131 9 6 3.8652 -1.9825 -3.0829 10 8 3.8465 -0.7862 -3.2812 11 7 4.1712 -2.8274 -4.0875 12 6 4.2048 -4.2787 -3.8609 13 6 3.2971 -4.9563 -4.8986 14 6 3.7302 -4.5295 -6.3030 15 7 2.8902 -5.2013 -7.2978 16 6 1.5353 -5.0031 -7.2957 17 1 1.0128 -4.8538 -6.3624 18 6 0.8334 -4.9944 -8.4932 19 7 1.4599 -4.7352 -9.6214 20 14 -1.0003 -5.3503 -8.5037 21 1 -1.7045 -4.3451 -7.6678 22 1 -1.5104 -5.2799 -9.8965 23 1 -1.2441 -6.7086 -7.9549 24 6 3.4999 -6.0849 -8.2946 25 6 3.6766 -7.4824 -7.6973 26 8 2.3937 -8.0492 -7.4240 27 6 3.5777 -3.0136 -6.4470 28 6 4.4838 -2.3142 -5.4282 29 8 2.0188 -0.6979 -1.1578 30 1 -0.3633 -1.0276 -0.0067 31 1 -0.3632 0.5080 0.8933 32 1 -0.3633 0.5197 -0.8866 33 1 2.6620 -0.0860 1.8573 34 1 1.2246 -1.1530 1.8209 35 1 2.3539 -2.8221 0.6095 36 1 3.8332 -2.0226 1.2371 37 1 2.6817 -3.1837 -1.7751 38 1 4.4037 -3.0833 -1.3358 39 1 5.2265 -4.6423 -3.9722 40 1 3.8433 -4.5003 -2.8568 41 1 2.2623 -4.6577 -4.7305 42 1 3.3831 -6.0389 -4.8045 43 1 4.7725 -4.8064 -6.4614 44 1 0.9693 -4.7288 -10.4581 45 1 2.8548 -6.1433 -9.1713 46 1 4.4727 -5.6883 -8.5851 47 1 4.2100 -8.1156 -8.4062 48 1 4.2476 -7.4123 -6.7715 49 1 2.4291 -8.9370 -7.0424 50 1 2.5404 -2.7333 -6.2645 51 1 3.8639 -2.7129 -7.4550 52 1 4.3065 -1.2392 -5.4585 53 1 5.5283 -2.5189 -5.6634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098467402.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:54 Heat of formation + Delta-G solvation = -135.623053 kcal Electronic energy + Delta-G solvation = -31597.256481 eV Core-core repulsion = 27468.413166 eV Total energy + Delta-G solvation = -4128.843316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.32820 -40.27320 -38.96856 -37.59551 -36.19376 -34.09466 -33.61821 -33.15060 -32.18949 -31.79756 -30.06696 -29.30418 -26.64502 -25.58895 -24.64315 -23.91459 -22.61976 -22.12811 -21.80584 -21.34938 -19.93071 -18.46682 -18.16298 -17.81019 -17.51585 -16.91323 -16.83453 -16.71895 -16.10863 -16.05000 -15.62029 -15.54024 -15.04874 -14.82001 -14.66909 -14.41266 -14.22232 -14.10634 -13.84984 -13.70181 -13.34168 -13.25475 -13.06429 -13.03893 -12.98597 -12.80838 -12.73713 -12.52526 -12.46873 -12.37962 -12.15657 -11.93595 -11.81825 -11.70309 -11.61077 -11.49709 -11.45792 -11.11604 -10.72932 -10.58933 -10.53886 -10.36003 -9.55931 -8.47830 -7.74339 -5.25998 1.43605 1.46604 1.52834 1.71181 2.10898 2.57015 2.90952 3.35998 3.52560 3.60305 3.63538 3.84564 3.86511 3.99999 4.04536 4.05457 4.19248 4.24385 4.27816 4.36153 4.41295 4.47621 4.52831 4.58792 4.60524 4.61868 4.66128 4.74410 4.77824 4.84212 4.86938 4.90859 4.92748 4.95517 4.97006 5.09029 5.12677 5.14537 5.15810 5.23776 5.24729 5.30884 5.49689 5.61842 5.69883 5.76190 5.88671 6.14896 6.53121 6.54428 7.24318 7.27137 7.30674 8.00801 8.46080 9.23554 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013154 B = 0.002961 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.076987 B = 9453.765869 C =10276.937858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 H 0.057 0.943 4 C -0.146 4.146 5 C -0.140 4.140 6 C 0.085 3.915 7 H 0.061 0.939 8 C -0.128 4.128 9 C 0.505 3.495 10 O -0.586 6.586 11 N -0.610 5.610 12 C 0.114 3.886 13 C -0.129 4.129 14 C 0.173 3.827 15 N -0.584 5.584 16 C -0.218 4.218 17 H 0.044 0.956 18 C -0.038 4.038 19 N -0.923 5.923 20 Si 0.941 3.059 21 H -0.286 1.286 22 H -0.297 1.297 23 H -0.283 1.283 24 C 0.133 3.867 25 C 0.070 3.930 26 O -0.577 6.577 27 C -0.122 4.122 28 C 0.123 3.877 29 O -0.397 6.397 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.147 0.853 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.245 0.755 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.374 0.626 50 H 0.026 0.974 51 H 0.047 0.953 52 H 0.062 0.938 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.039 -0.886 22.827 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.001 4.001 3 H 0.075 0.925 4 C -0.183 4.183 5 C -0.178 4.178 6 C 0.027 3.973 7 H 0.079 0.921 8 C -0.167 4.167 9 C 0.295 3.705 10 O -0.466 6.466 11 N -0.343 5.343 12 C -0.008 4.008 13 C -0.169 4.169 14 C 0.066 3.934 15 N -0.304 5.304 16 C -0.349 4.349 17 H 0.061 0.939 18 C -0.234 4.234 19 N -0.569 5.569 20 Si 0.771 3.229 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.209 1.209 24 C 0.007 3.993 25 C -0.009 4.009 26 O -0.382 6.382 27 C -0.162 4.162 28 C 0.000 4.000 29 O -0.317 6.317 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.165 0.835 39 H 0.114 0.886 40 H 0.129 0.871 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.221 0.779 50 H 0.045 0.955 51 H 0.066 0.934 52 H 0.081 0.919 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.667 0.319 22.095 23.736 hybrid contribution -1.178 -0.298 -0.765 1.436 sum 7.489 0.020 21.330 22.607 Atomic orbital electron populations 1.21929 0.93478 1.02628 1.02490 1.22912 0.95588 0.95809 0.85768 0.92518 1.23000 1.00794 0.97613 0.96897 1.23173 1.01694 0.99141 0.93776 1.22972 0.87855 0.92735 0.93720 0.92076 1.21882 1.05707 0.98942 0.90176 1.21289 0.75347 0.86045 0.87775 1.90667 1.53869 1.17554 1.84488 1.48289 1.68313 1.08111 1.09605 1.22088 1.01182 0.77332 1.00177 1.22266 0.98830 1.00443 0.95396 1.20531 0.93854 0.89543 0.89425 1.43936 1.02755 1.49321 1.34355 1.18777 0.84087 1.41515 0.90553 0.93878 1.25441 1.00187 1.01472 0.96269 1.70073 1.36213 1.52569 0.98078 0.85751 0.83089 0.78201 0.75829 1.21278 1.22291 1.20926 1.21036 0.96333 0.87517 0.94422 1.22856 0.84137 0.95713 0.98223 1.86787 1.30308 1.35213 1.85858 1.22133 0.98196 0.98463 0.97409 1.21472 0.98943 0.98260 0.81351 1.89017 1.40067 1.68096 1.34563 0.92156 0.89038 0.93873 0.89386 0.88934 0.89421 0.87583 0.87390 0.83531 0.88560 0.87116 0.94648 0.90460 0.91208 0.94624 0.91561 0.93742 0.93826 0.93681 0.77941 0.95512 0.93445 0.91926 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.36 71.98 0.67 -2.17 16 2 C 0.06 1.21 4.06 30.97 0.13 1.34 16 3 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.15 -1.97 6.64 31.58 0.21 -1.76 16 5 C -0.14 -1.83 6.59 31.89 0.21 -1.62 16 6 C 0.08 1.85 2.80 31.27 0.09 1.94 16 7 H 0.06 1.46 8.03 -2.39 -0.02 1.44 16 8 C -0.13 -2.58 3.82 29.85 0.11 -2.46 16 9 C 0.51 15.52 7.61 87.66 0.67 16.19 16 10 O -0.59 -23.54 14.97 7.84 0.12 -23.43 16 11 N -0.61 -17.68 2.97 -817.99 -2.43 -20.11 16 12 C 0.11 2.51 6.37 86.51 0.55 3.06 16 13 C -0.13 -4.08 5.32 30.82 0.16 -3.92 16 14 C 0.17 6.54 2.59 45.02 0.12 6.66 16 15 N -0.58 -27.59 2.35 -677.89 -1.59 -29.18 16 16 C -0.22 -12.00 8.06 84.03 0.68 -11.33 16 17 H 0.04 2.46 6.87 -2.91 -0.02 2.44 16 18 C -0.04 -2.20 4.91 84.86 0.42 -1.78 16 19 N -0.92 -55.45 11.34 21.65 0.25 -55.20 16 20 Si 0.94 47.81 29.61 68.60 2.03 49.84 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 23 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 24 C 0.13 6.02 5.57 86.38 0.48 6.51 16 25 C 0.07 2.52 7.39 71.98 0.53 3.05 16 26 O -0.58 -22.75 13.40 -148.98 -2.00 -24.75 16 27 C -0.12 -4.94 5.31 30.69 0.16 -4.78 16 28 C 0.12 4.07 6.43 86.38 0.56 4.62 16 29 O -0.40 -11.76 10.28 -138.12 -1.42 -13.18 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.09 0.99 7.70 -2.39 -0.02 0.97 16 35 H 0.09 1.02 8.06 -2.38 -0.02 1.00 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 2.08 7.70 -2.39 -0.02 2.07 16 38 H 0.15 1.64 7.93 -2.39 -0.02 1.62 16 39 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.11 1.72 5.93 -2.39 -0.01 1.71 16 41 H 0.03 1.35 7.03 -2.39 -0.02 1.34 16 42 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.07 2.33 7.87 -2.38 -0.02 2.31 16 44 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.07 3.63 5.34 -2.39 -0.01 3.62 16 46 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 47 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.37 10.17 9.12 -74.06 -0.68 9.49 16 50 H 0.03 1.28 7.71 -2.39 -0.02 1.27 16 51 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 52 H 0.06 2.34 7.01 -2.39 -0.02 2.32 16 53 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -80.47 409.41 0.92 -79.56 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.21 Total: 22.89 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 5.74 Total: 13.56 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -3.77 Total: -104.49 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -3.30 Total: -61.35 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -80.47 0.92 -79.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098467402.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.068 kcal (2) G-P(sol) polarization free energy of solvation -80.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds