Wall clock time and date at job start Wed Apr 1 2020 01:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.52372 * 2 1 4 4 C 1.53096 * 109.52110 * 120.18371 * 2 1 3 5 5 O 1.42900 * 109.41470 * 177.51267 * 4 2 1 6 6 C 1.42901 * 114.10026 * 298.84483 * 5 4 2 7 7 C 1.53097 * 109.41363 * 61.15770 * 6 5 4 8 8 C 1.53174 * 109.52159 * 239.86907 * 2 1 3 9 9 H 1.08998 * 109.54332 * 63.25157 * 8 2 1 10 10 C 1.50695 * 109.54702 * 303.07183 * 8 2 1 11 11 O 1.21280 * 119.99809 * 335.44226 * 10 8 2 12 12 N 1.34775 * 120.00061 * 155.44635 * 10 8 2 13 13 C 1.46920 * 120.63273 * 4.57984 * 12 10 8 14 14 C 1.53629 * 108.54303 * 126.36876 * 13 12 10 15 15 C 1.53037 * 109.23894 * 54.85753 * 14 13 12 16 16 N 1.46500 * 109.45812 * 178.48939 * 15 14 13 17 17 C 1.36935 * 120.00194 * 60.06696 * 16 15 14 18 18 H 1.07997 * 119.99929 * 315.80720 * 17 16 15 19 19 C 1.38818 * 120.00384 * 135.80160 * 17 16 15 20 20 N 1.31627 * 119.99256 * 3.12392 * 19 17 16 21 21 Si 1.86795 * 120.00297 * 183.12600 * 19 17 16 22 22 H 1.48500 * 109.47106 * 90.00355 * 21 19 17 23 23 H 1.48503 * 109.46767 * 209.99989 * 21 19 17 24 24 H 1.48501 * 109.46967 * 329.99700 * 21 19 17 25 25 C 1.46508 * 120.00278 * 240.06819 * 16 15 14 26 26 C 1.52999 * 109.46789 * 84.20148 * 25 16 15 27 27 O 1.42896 * 109.47438 * 65.00372 * 26 25 16 28 28 C 1.53041 * 109.54147 * 298.50955 * 15 14 13 29 29 C 1.46934 * 120.62711 * 184.85986 * 12 10 8 30 30 H 1.08999 * 109.47024 * 175.57372 * 1 2 3 31 31 H 1.09000 * 109.47260 * 295.57985 * 1 2 3 32 32 H 1.08999 * 109.46779 * 55.57884 * 1 2 3 33 33 H 1.09000 * 109.48187 * 297.50279 * 4 2 1 34 34 H 1.09001 * 109.48060 * 57.53398 * 4 2 1 35 35 H 1.09004 * 109.47978 * 301.17460 * 6 5 4 36 36 H 1.08997 * 109.47826 * 181.13778 * 6 5 4 37 37 H 1.09002 * 109.52050 * 182.48805 * 7 6 5 38 38 H 1.09000 * 109.52379 * 62.29811 * 7 6 5 39 39 H 1.08996 * 109.58922 * 246.20107 * 13 12 10 40 40 H 1.09004 * 109.58941 * 6.63097 * 13 12 10 41 41 H 1.08998 * 109.63051 * 294.86633 * 14 13 12 42 42 H 1.09000 * 109.45564 * 174.74131 * 14 13 12 43 43 H 1.09001 * 109.45883 * 58.53378 * 15 14 13 44 44 H 0.97002 * 119.99309 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.47116 * 204.20109 * 25 16 15 46 46 H 1.08994 * 109.46681 * 324.20664 * 25 16 15 47 47 H 1.09006 * 109.47246 * 185.00196 * 26 25 16 48 48 H 1.09003 * 109.47590 * 305.00221 * 26 25 16 49 49 H 0.96700 * 114.01093 * 179.97438 * 27 26 25 50 50 H 1.09001 * 109.49707 * 301.41787 * 28 15 14 51 51 H 1.08998 * 109.49598 * 181.31628 * 28 15 14 52 52 H 1.08996 * 109.58748 * 353.37021 * 29 12 10 53 53 H 1.09004 * 109.58098 * 113.80332 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7255 1.2473 5 8 3.4694 -0.7749 1.2160 6 6 4.0043 -1.4817 0.0951 7 6 3.5716 -0.7865 -1.1985 8 6 2.0419 -0.7247 -1.2486 9 1 1.7280 -0.1814 -2.1399 10 6 1.4800 -2.1225 -1.2862 11 8 1.1334 -2.6645 -0.2581 12 7 1.3626 -2.7702 -2.4623 13 6 1.8696 -2.1676 -3.7026 14 6 2.8151 -3.1700 -4.3818 15 6 2.0820 -4.4983 -4.5827 16 7 2.9677 -5.4466 -5.2627 17 6 4.1553 -5.8093 -4.6854 18 1 4.7892 -5.0586 -4.2370 19 6 4.5443 -7.1418 -4.6762 20 7 3.8019 -8.0481 -5.2761 21 14 6.1211 -7.6486 -3.8125 22 1 5.8243 -7.9834 -2.3965 23 1 6.6976 -8.8367 -4.4918 24 1 7.0950 -6.5286 -3.8628 25 6 2.5830 -6.0069 -6.5606 26 6 2.9814 -5.0356 -7.6736 27 8 4.4050 -4.9206 -7.7186 28 6 1.6731 -5.0681 -3.2224 29 6 0.7197 -4.0897 -2.5292 30 1 -0.3633 -1.0246 -0.0793 31 1 -0.3634 0.4437 0.9269 32 1 -0.3633 0.5809 -0.8477 33 1 1.7158 -0.1896 2.1388 34 1 1.6432 -1.7399 1.2669 35 1 3.6315 -2.5060 0.0996 36 1 5.0925 -1.4904 0.1566 37 1 3.9417 -1.3490 -2.0557 38 1 3.9780 0.2246 -1.2222 39 1 1.0353 -1.9408 -4.3663 40 1 2.4126 -1.2519 -3.4687 41 1 3.6918 -3.3296 -3.7541 42 1 3.1271 -2.7767 -5.3493 43 1 1.1919 -4.3336 -5.1899 44 1 4.0735 -8.9793 -5.2694 45 1 3.0915 -6.9593 -6.7103 46 1 1.5046 -6.1632 -6.5835 47 1 2.6167 -5.4099 -8.6303 48 1 2.5439 -4.0570 -7.4758 49 1 4.7298 -4.3196 -8.4030 50 1 2.5606 -5.2098 -2.6057 51 1 1.1717 -6.0254 -3.3649 52 1 0.5038 -4.4425 -1.5208 53 1 -0.2065 -4.0163 -3.0993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098473304.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:45 Heat of formation + Delta-G solvation = -130.309064 kcal Electronic energy + Delta-G solvation = -32844.262428 eV Core-core repulsion = 28715.649544 eV Total energy + Delta-G solvation = -4128.612884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.04759 -39.89746 -38.66934 -37.57475 -36.22506 -35.39434 -33.92092 -33.17017 -31.95648 -31.79304 -29.42011 -28.00096 -26.96303 -26.11227 -24.78294 -24.10137 -23.33878 -22.59592 -21.89073 -21.13575 -19.65088 -18.36361 -18.12088 -17.91776 -17.20822 -16.97595 -16.82289 -16.61523 -16.39333 -16.02593 -15.58082 -15.47253 -15.10127 -14.95488 -14.91351 -14.65541 -14.28271 -14.10749 -14.00575 -13.68724 -13.46450 -13.33268 -13.11950 -13.02718 -12.91765 -12.87414 -12.71498 -12.61471 -12.44774 -12.32802 -12.07812 -11.99348 -11.83597 -11.64323 -11.59848 -11.51822 -11.36208 -11.13179 -10.65266 -10.56131 -10.43576 -10.00839 -9.57546 -8.32483 -7.66333 -5.41620 1.42314 1.44728 1.50474 1.62016 2.05585 2.53100 2.96351 3.39213 3.43247 3.59200 3.65123 3.74546 3.88728 3.92741 3.96018 4.08829 4.16725 4.26183 4.30316 4.39324 4.46985 4.50056 4.56952 4.61367 4.63163 4.69419 4.71685 4.72647 4.74900 4.82588 4.84264 4.86566 4.93420 4.96540 5.01918 5.05677 5.12638 5.13804 5.18207 5.22593 5.27873 5.40284 5.50003 5.62429 5.69691 5.75246 6.05770 6.25418 6.49825 6.66234 7.23304 7.26918 7.34500 7.99927 8.49633 9.23986 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.003604 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.323408 B = 7767.110144 C = 8528.202501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.102 0.898 4 C 0.038 3.962 5 O -0.398 6.398 6 C 0.055 3.945 7 C -0.141 4.141 8 C -0.104 4.104 9 H 0.126 0.874 10 C 0.517 3.483 11 O -0.573 6.573 12 N -0.605 5.605 13 C 0.111 3.889 14 C -0.127 4.127 15 C 0.175 3.825 16 N -0.587 5.587 17 C -0.215 4.215 18 H 0.043 0.957 19 C -0.033 4.033 20 N -0.923 5.923 21 Si 0.940 3.060 22 H -0.292 1.292 23 H -0.295 1.295 24 H -0.275 1.275 25 C 0.126 3.874 26 C 0.070 3.930 27 O -0.576 6.576 28 C -0.121 4.121 29 C 0.122 3.878 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.245 0.755 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.373 0.627 50 H 0.031 0.969 51 H 0.046 0.954 52 H 0.069 0.931 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 19.623 1.891 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.120 0.880 4 C -0.038 4.038 5 O -0.317 6.317 6 C -0.022 4.022 7 C -0.178 4.178 8 C -0.125 4.125 9 H 0.143 0.857 10 C 0.307 3.693 11 O -0.454 6.454 12 N -0.337 5.337 13 C -0.011 4.011 14 C -0.167 4.167 15 C 0.068 3.932 16 N -0.307 5.307 17 C -0.347 4.347 18 H 0.061 0.939 19 C -0.228 4.228 20 N -0.570 5.570 21 Si 0.770 3.230 22 H -0.220 1.220 23 H -0.222 1.222 24 H -0.200 1.200 25 C 0.000 4.000 26 C -0.010 4.010 27 O -0.380 6.380 28 C -0.162 4.162 29 C -0.001 4.001 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.059 0.941 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.102 0.898 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.219 0.781 50 H 0.050 0.950 51 H 0.065 0.935 52 H 0.087 0.913 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.095 18.800 3.020 20.320 hybrid contribution 0.911 -1.088 -0.270 1.445 sum -6.183 17.712 2.750 18.961 Atomic orbital electron populations 1.21800 0.93693 1.01868 1.03016 1.21565 0.96996 0.99970 0.93269 0.87987 1.23215 0.80096 1.02246 0.98244 1.87833 1.21682 1.76169 1.46041 1.22589 0.99477 0.93856 0.86238 1.22173 0.93262 1.04022 0.98374 1.21551 0.96688 0.92126 1.02114 0.85657 1.21110 0.77135 0.88662 0.82420 1.90538 1.52112 1.69575 1.33179 1.48286 1.58211 1.18973 1.08199 1.22099 0.98144 0.96227 0.84632 1.22253 0.98292 0.95848 1.00325 1.20508 0.92119 0.89349 0.91210 1.43822 1.18664 1.50738 1.17462 1.18778 0.96444 0.89380 1.30063 0.93929 1.25885 1.00297 0.96655 0.99987 1.69786 1.40043 1.00710 1.46421 0.85684 0.81409 0.77465 0.78403 1.21978 1.22189 1.19962 1.21255 0.96209 0.98639 0.83932 1.22884 0.80897 0.99027 0.98209 1.86779 1.22303 1.69263 1.59700 1.22106 0.97999 0.97668 0.98392 1.21506 0.95320 0.82238 1.01019 0.93903 0.91423 0.90884 0.88617 0.91361 0.95946 0.87809 0.90012 0.87376 0.88936 0.87534 0.94130 0.90857 0.91679 0.94518 0.89808 0.94424 0.94203 0.94209 0.78082 0.95008 0.93522 0.91296 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.95 71.98 0.64 -1.92 16 2 C -0.10 -1.87 2.67 -10.70 -0.03 -1.90 16 3 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.04 0.94 5.83 72.01 0.42 1.36 16 5 O -0.40 -10.93 10.77 -148.98 -1.60 -12.53 16 6 C 0.06 1.42 6.58 72.01 0.47 1.90 16 7 C -0.14 -2.76 5.35 30.69 0.16 -2.59 16 8 C -0.10 -2.02 1.73 -11.42 -0.02 -2.04 16 9 H 0.13 1.69 6.75 -2.39 -0.02 1.68 16 10 C 0.52 13.96 5.05 87.66 0.44 14.40 16 11 O -0.57 -19.44 10.99 -3.03 -0.03 -19.47 16 12 N -0.60 -15.96 2.97 -818.07 -2.43 -18.39 16 13 C 0.11 2.35 5.97 86.51 0.52 2.87 16 14 C -0.13 -3.83 5.31 30.82 0.16 -3.67 16 15 C 0.17 6.37 2.59 45.02 0.12 6.48 16 16 N -0.59 -27.01 2.33 -677.89 -1.58 -28.59 16 17 C -0.22 -11.42 8.00 84.04 0.67 -10.75 16 18 H 0.04 2.33 6.92 -2.91 -0.02 2.31 16 19 C -0.03 -1.84 5.36 84.86 0.46 -1.38 16 20 N -0.92 -53.76 10.73 21.65 0.23 -53.53 16 21 Si 0.94 46.24 29.55 68.60 2.03 48.27 16 22 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 25 C 0.13 5.65 5.54 86.38 0.48 6.13 16 26 C 0.07 2.51 7.38 71.98 0.53 3.04 16 27 O -0.58 -22.61 13.41 -148.98 -2.00 -24.61 16 28 C -0.12 -4.63 5.31 30.67 0.16 -4.46 16 29 C 0.12 3.70 6.44 86.36 0.56 4.25 16 30 H 0.04 0.99 6.09 -2.39 -0.01 0.98 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.11 5.15 -2.39 -0.01 2.10 16 35 H 0.02 0.72 7.03 -2.38 -0.02 0.70 16 36 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.08 1.64 7.17 -2.39 -0.02 1.63 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.69 4.87 -2.38 -0.01 1.67 16 41 H 0.04 1.46 7.13 -2.39 -0.02 1.44 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.07 2.13 7.87 -2.39 -0.02 2.11 16 44 H 0.24 14.07 8.31 -92.71 -0.77 13.30 16 45 H 0.08 4.57 5.19 -2.39 -0.01 4.56 16 46 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 47 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.37 10.10 9.12 -74.06 -0.68 9.42 16 50 H 0.03 1.43 7.71 -2.39 -0.02 1.41 16 51 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.07 2.31 7.00 -2.39 -0.02 2.29 16 53 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -70.95 392.16 0.60 -70.36 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.23 Total: 26.79 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.75 Total: 11.70 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -3.78 Total: -100.51 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -3.63 Total: -56.61 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.95 0.60 -70.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098473304.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.953 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds