Wall clock time and date at job start Wed Apr 1 2020 01:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.57243 * 2 1 4 4 C 1.53093 * 109.52257 * 239.84251 * 2 1 3 5 5 O 1.42904 * 109.41387 * 182.48378 * 4 2 1 6 6 C 1.42898 * 114.09872 * 61.16284 * 5 4 2 7 7 C 1.53104 * 109.41131 * 298.83808 * 6 5 4 8 8 C 1.53178 * 109.16190 * 57.61099 * 7 6 5 9 9 H 1.08997 * 109.54564 * 62.88634 * 8 7 6 10 10 C 1.50701 * 109.54040 * 183.15698 * 8 7 6 11 11 O 1.21274 * 120.00590 * 92.63330 * 10 8 7 12 12 N 1.34781 * 119.99639 * 272.63087 * 10 8 7 13 13 C 1.46930 * 120.62788 * 4.65721 * 12 10 8 14 14 C 1.52763 * 109.00595 * 233.58184 * 13 12 10 15 15 C 1.53044 * 109.38266 * 305.58733 * 14 13 12 16 16 N 1.46506 * 109.45973 * 181.25877 * 15 14 13 17 17 C 1.36939 * 119.99959 * 299.93717 * 16 15 14 18 18 H 1.08000 * 119.99661 * 319.15748 * 17 16 15 19 19 C 1.38814 * 119.99938 * 139.16413 * 17 16 15 20 20 N 1.31616 * 119.99697 * 339.98765 * 19 17 16 21 21 Si 1.86800 * 119.99982 * 159.99351 * 19 17 16 22 22 H 1.48498 * 109.46793 * 59.99856 * 21 19 17 23 23 H 1.48491 * 109.46856 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46994 * 299.99906 * 21 19 17 25 25 C 1.46497 * 119.99982 * 119.93279 * 16 15 14 26 26 C 1.52999 * 109.46860 * 84.45210 * 25 16 15 27 27 O 1.42902 * 109.47150 * 65.00502 * 26 25 16 28 28 C 1.53040 * 109.53542 * 61.24252 * 15 14 13 29 29 C 1.46923 * 120.63021 * 184.93336 * 12 10 8 30 30 H 1.09006 * 109.46970 * 299.84346 * 1 2 3 31 31 H 1.08997 * 109.47194 * 59.84359 * 1 2 3 32 32 H 1.08997 * 109.47267 * 179.84729 * 1 2 3 33 33 H 1.08997 * 109.47843 * 302.46781 * 4 2 1 34 34 H 1.08999 * 109.47783 * 62.49989 * 4 2 1 35 35 H 1.09000 * 109.48187 * 178.85829 * 6 5 4 36 36 H 1.09003 * 109.48727 * 58.81858 * 6 5 4 37 37 H 1.09003 * 109.51968 * 297.70111 * 7 6 5 38 38 H 1.09002 * 109.52213 * 177.51638 * 7 6 5 39 39 H 1.09001 * 109.58970 * 353.41666 * 13 12 10 40 40 H 1.08999 * 109.58781 * 113.84400 * 13 12 10 41 41 H 1.08998 * 109.56349 * 185.55598 * 14 13 12 42 42 H 1.08994 * 109.36228 * 65.50082 * 14 13 12 43 43 H 1.08993 * 109.44849 * 301.22827 * 15 14 13 44 44 H 0.97005 * 119.99522 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.47283 * 204.45442 * 25 16 15 46 46 H 1.09004 * 109.47243 * 324.45951 * 25 16 15 47 47 H 1.09002 * 109.46890 * 185.00034 * 26 25 16 48 48 H 1.09002 * 109.47484 * 304.99756 * 26 25 16 49 49 H 0.96700 * 113.99989 * 179.97438 * 27 26 25 50 50 H 1.09004 * 109.49501 * 178.67927 * 28 15 14 51 51 H 1.08999 * 109.50187 * 58.58282 * 28 15 14 52 52 H 1.09000 * 109.58534 * 246.15565 * 29 12 10 53 53 H 1.08998 * 109.58565 * 6.44377 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4694 -0.7742 -1.2163 6 6 4.0044 -1.4816 -0.0958 7 6 3.5716 -0.7870 1.1982 8 6 2.0419 -0.7253 1.2483 9 1 1.6367 -1.7368 1.2742 10 6 1.6079 0.0253 2.4809 11 8 1.4056 1.2197 2.4239 12 7 1.4444 -0.6308 3.6468 13 6 1.7828 -2.0564 3.7573 14 6 0.5755 -2.8130 4.3082 15 6 0.1290 -2.1689 5.6227 16 7 -1.0101 -2.9116 6.1679 17 6 -2.1672 -3.0193 5.4435 18 1 -2.5435 -2.1671 4.8971 19 6 -2.8566 -4.2238 5.4117 20 7 -2.2395 -5.3436 5.7240 21 14 -4.6599 -4.2552 4.9255 22 1 -4.8108 -3.7190 3.5489 23 1 -5.1600 -5.6527 4.9694 24 1 -5.4422 -3.4190 5.8710 25 6 -0.9113 -3.5391 7.4880 26 6 -1.2393 -2.5072 8.5689 27 8 -2.6044 -2.1035 8.4436 28 6 -0.2839 -0.7176 5.3671 29 6 0.9189 0.0643 4.8297 30 1 -0.3633 0.5114 0.8914 31 1 -0.3633 0.5162 -0.8885 32 1 -0.3633 -1.0276 -0.0027 33 1 1.6431 -1.7392 -1.2677 34 1 1.7158 -0.1885 -2.1388 35 1 5.0926 -1.4903 -0.1572 36 1 3.6316 -2.5059 -0.1007 37 1 3.9781 0.2241 1.2224 38 1 3.9417 -1.3499 2.0551 39 1 2.0400 -2.4483 2.7732 40 1 2.6280 -2.1799 4.4344 41 1 0.8472 -3.8534 4.4867 42 1 -0.2394 -2.7682 3.5858 43 1 0.9525 -2.1919 6.3362 44 1 -2.7212 -6.1853 5.7014 45 1 -1.6169 -4.3674 7.5503 46 1 0.1017 -3.9126 7.6378 47 1 -1.0798 -2.9484 9.5528 48 1 -0.5912 -1.6387 8.4509 49 1 -2.8827 -1.4489 9.0987 50 1 -0.6240 -0.2666 6.2994 51 1 -1.0908 -0.6924 4.6347 52 1 1.6923 0.1171 5.5961 53 1 0.6086 1.0719 4.5535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098473306.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:59 Heat of formation + Delta-G solvation = -139.204412 kcal Electronic energy + Delta-G solvation = -32390.705953 eV Core-core repulsion = 28261.707338 eV Total energy + Delta-G solvation = -4128.998615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.77818 -39.99851 -38.93145 -37.66370 -36.23010 -35.41748 -33.89323 -33.18952 -32.00245 -31.92247 -29.43540 -28.08700 -27.07834 -26.23946 -24.65440 -24.07164 -23.28488 -22.48821 -21.80972 -20.96478 -19.92482 -18.60873 -18.18504 -17.88569 -17.25077 -17.14117 -16.76131 -16.48141 -16.13708 -16.00088 -15.65212 -15.54298 -15.31643 -15.24610 -14.81620 -14.62574 -14.35545 -14.17265 -14.09656 -13.77004 -13.46074 -13.26117 -13.10508 -13.07601 -13.00458 -12.89625 -12.76166 -12.58060 -12.45429 -12.37821 -12.12364 -11.96171 -11.82965 -11.62917 -11.58083 -11.51532 -11.32600 -11.13773 -10.86869 -10.63536 -10.39572 -10.31940 -9.61630 -8.40003 -7.74795 -5.33944 1.42448 1.46463 1.52777 1.59141 2.02809 2.55220 2.96553 3.35232 3.40741 3.55533 3.59139 3.73187 3.83283 3.88463 3.91748 4.13770 4.16720 4.24934 4.26955 4.37930 4.45361 4.45898 4.46454 4.57057 4.57610 4.61477 4.63909 4.71241 4.73958 4.78973 4.80558 4.83623 4.89397 4.90061 4.93373 5.06651 5.07182 5.11415 5.16265 5.20621 5.22100 5.31610 5.47954 5.62895 5.68510 5.74850 5.81703 6.25557 6.44629 6.57856 7.16848 7.19454 7.30524 7.97760 8.49064 9.21883 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003351 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.052975 B = 8353.154295 C = 9106.095772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.069 0.931 4 C 0.070 3.930 5 O -0.399 6.399 6 C 0.061 3.939 7 C -0.139 4.139 8 C -0.105 4.105 9 H 0.105 0.895 10 C 0.520 3.480 11 O -0.584 6.584 12 N -0.605 5.605 13 C 0.113 3.887 14 C -0.124 4.124 15 C 0.174 3.826 16 N -0.583 5.583 17 C -0.224 4.224 18 H 0.033 0.967 19 C -0.023 4.023 20 N -0.915 5.915 21 Si 0.935 3.065 22 H -0.282 1.282 23 H -0.293 1.293 24 H -0.290 1.290 25 C 0.146 3.854 26 C 0.065 3.935 27 O -0.578 6.578 28 C -0.123 4.123 29 C 0.121 3.879 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.246 0.754 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.040 0.960 49 H 0.374 0.626 50 H 0.063 0.937 51 H 0.031 0.969 52 H 0.086 0.914 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.767 6.166 -5.789 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.087 0.913 4 C -0.007 4.007 5 O -0.318 6.318 6 C -0.016 4.016 7 C -0.177 4.177 8 C -0.127 4.127 9 H 0.123 0.877 10 C 0.310 3.690 11 O -0.465 6.465 12 N -0.337 5.337 13 C -0.009 4.009 14 C -0.164 4.164 15 C 0.068 3.932 16 N -0.303 5.303 17 C -0.355 4.355 18 H 0.051 0.949 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.765 3.235 22 H -0.208 1.208 23 H -0.219 1.219 24 H -0.217 1.217 25 C 0.019 3.981 26 C -0.014 4.014 27 O -0.383 6.383 28 C -0.163 4.163 29 C -0.002 4.002 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.221 0.779 50 H 0.082 0.918 51 H 0.050 0.950 52 H 0.104 0.896 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.744 6.245 -6.431 16.409 hybrid contribution -1.930 0.141 0.858 2.117 sum 11.814 6.386 -5.573 14.540 Atomic orbital electron populations 1.21739 0.94511 1.02081 1.01940 1.21573 0.96274 1.00225 0.94280 0.91256 1.22715 0.80487 1.00336 0.97141 1.87911 1.20825 1.76879 1.46188 1.22760 1.00343 0.94830 0.83647 1.22165 0.91810 1.02815 1.00869 1.21529 0.98674 1.00522 0.91928 0.87697 1.20946 0.76083 0.87235 0.84757 1.90627 1.53506 1.16742 1.85594 1.48259 1.63282 1.11598 1.10515 1.21915 0.97359 0.78346 1.03281 1.22035 0.96802 0.99104 0.98454 1.20492 0.89272 0.89886 0.93589 1.43806 1.10844 1.61288 1.14387 1.18590 0.99677 0.92340 1.24931 0.94919 1.25541 1.00704 0.95214 1.00544 1.70078 1.35329 0.97068 1.53509 0.85867 0.83784 0.75925 0.77899 1.20800 1.21932 1.21654 1.20879 0.98686 0.94723 0.83766 1.22942 0.82356 0.97913 0.98220 1.86768 1.28495 1.63913 1.59113 1.22142 0.96767 0.97418 0.99965 1.21540 0.95865 0.95798 0.86974 0.94756 0.90794 0.92096 0.91683 0.87461 0.86644 0.91331 0.91754 0.88392 0.88102 0.88922 0.92066 0.94508 0.91450 0.94438 0.92775 0.93109 0.93591 0.94172 0.77941 0.91842 0.94971 0.89619 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 71.98 0.65 -2.87 16 2 C -0.10 -2.37 2.08 -10.70 -0.02 -2.40 16 3 H 0.07 1.87 7.76 -2.39 -0.02 1.85 16 4 C 0.07 1.27 6.13 72.01 0.44 1.71 16 5 O -0.40 -8.00 10.77 -148.98 -1.60 -9.60 16 6 C 0.06 0.90 6.84 72.02 0.49 1.40 16 7 C -0.14 -2.43 5.30 30.69 0.16 -2.26 16 8 C -0.11 -2.36 1.25 -11.42 -0.01 -2.38 16 9 H 0.11 2.17 6.35 -2.39 -0.02 2.15 16 10 C 0.52 15.26 5.98 87.66 0.52 15.78 16 11 O -0.58 -21.32 14.77 -3.01 -0.04 -21.37 16 12 N -0.60 -16.87 2.98 -819.73 -2.44 -19.31 16 13 C 0.11 2.73 6.03 86.22 0.52 3.25 16 14 C -0.12 -4.24 5.29 30.53 0.16 -4.08 16 15 C 0.17 6.37 2.60 45.02 0.12 6.48 16 16 N -0.58 -26.66 2.29 -677.88 -1.55 -28.22 16 17 C -0.22 -11.92 7.97 84.03 0.67 -11.25 16 18 H 0.03 1.86 6.93 -2.91 -0.02 1.84 16 19 C -0.02 -1.27 4.90 84.86 0.42 -0.85 16 20 N -0.92 -52.05 11.72 21.65 0.25 -51.80 16 21 Si 0.94 45.95 29.60 68.60 2.03 47.98 16 22 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 24 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 25 C 0.15 6.37 5.56 86.38 0.48 6.85 16 26 C 0.07 2.34 7.39 71.98 0.53 2.88 16 27 O -0.58 -23.03 13.40 -148.98 -2.00 -25.03 16 28 C -0.12 -4.30 5.30 30.67 0.16 -4.14 16 29 C 0.12 3.55 6.42 86.36 0.55 4.10 16 30 H 0.03 1.04 6.81 -2.38 -0.02 1.02 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 1.35 7.67 -2.39 -0.02 1.34 16 39 H 0.10 1.98 5.17 -2.39 -0.01 1.97 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.50 7.71 -2.39 -0.02 1.49 16 43 H 0.07 2.19 7.87 -2.39 -0.02 2.17 16 44 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 45 H 0.05 2.85 5.81 -2.39 -0.01 2.83 16 46 H 0.05 2.02 8.04 -2.38 -0.02 2.00 16 47 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.37 10.51 9.12 -74.06 -0.68 9.84 16 50 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 51 H 0.03 1.34 7.09 -2.39 -0.02 1.32 16 52 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.07 2.28 7.03 -2.39 -0.02 2.26 16 Total: -1.00 -70.96 402.33 0.70 -70.26 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.22 Total: 24.86 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.84 Total: 12.22 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -3.74 Total: -99.32 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -3.64 Total: -56.00 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.96 0.70 -70.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098473306.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.947 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds