Wall clock time and date at job start Wed Apr 1 2020 01:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.52078 * 2 1 4 4 C 1.53098 * 109.52358 * 120.12507 * 2 1 3 5 5 O 1.42899 * 109.41627 * 177.57986 * 4 2 1 6 6 C 1.42904 * 114.09790 * 298.84396 * 5 4 2 7 7 C 1.53089 * 109.41803 * 61.15282 * 6 5 4 8 8 C 1.53171 * 109.57503 * 239.83952 * 2 1 3 9 9 H 1.08994 * 109.54968 * 302.94943 * 8 2 1 10 10 C 1.50700 * 109.54315 * 63.21813 * 8 2 1 11 11 O 1.21282 * 119.99972 * 21.46390 * 10 8 2 12 12 N 1.34779 * 120.00193 * 201.47132 * 10 8 2 13 13 C 1.46924 * 120.62994 * 3.93726 * 12 10 8 14 14 C 1.53619 * 108.54592 * 126.37023 * 13 12 10 15 15 C 1.53045 * 109.24196 * 54.85670 * 14 13 12 16 16 N 1.46493 * 109.45170 * 178.50258 * 15 14 13 17 17 C 1.36932 * 120.00261 * 60.05516 * 16 15 14 18 18 H 1.08002 * 120.00097 * 324.88065 * 17 16 15 19 19 C 1.38814 * 120.00127 * 144.88198 * 17 16 15 20 20 N 1.31613 * 120.00347 * 156.82556 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 336.82574 * 19 17 16 22 22 H 1.48505 * 109.47066 * 91.44408 * 21 19 17 23 23 H 1.48494 * 109.47296 * 211.44514 * 21 19 17 24 24 H 1.48509 * 109.47275 * 331.44929 * 21 19 17 25 25 C 1.46508 * 119.99595 * 240.06237 * 16 15 14 26 26 C 1.52998 * 109.47074 * 83.74116 * 25 16 15 27 27 O 1.42897 * 109.47392 * 66.23077 * 26 25 16 28 28 C 1.53047 * 109.53708 * 298.51164 * 15 14 13 29 29 C 1.46922 * 120.63048 * 184.21880 * 12 10 8 30 30 H 1.09006 * 109.47566 * 299.99677 * 1 2 3 31 31 H 1.08992 * 109.47290 * 60.00193 * 1 2 3 32 32 H 1.09002 * 109.47023 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47519 * 297.56064 * 4 2 1 34 34 H 1.09000 * 109.47953 * 57.58323 * 4 2 1 35 35 H 1.08996 * 109.48274 * 181.14582 * 6 5 4 36 36 H 1.09001 * 109.47329 * 301.17418 * 6 5 4 37 37 H 1.09002 * 109.51611 * 62.30276 * 7 6 5 38 38 H 1.08998 * 109.52341 * 182.42675 * 7 6 5 39 39 H 1.09005 * 109.58223 * 246.20344 * 13 12 10 40 40 H 1.08996 * 109.58403 * 6.62601 * 13 12 10 41 41 H 1.08998 * 109.63439 * 294.86517 * 14 13 12 42 42 H 1.08995 * 109.43423 * 174.72504 * 14 13 12 43 43 H 1.08996 * 109.46333 * 58.52734 * 15 14 13 44 44 H 0.97003 * 120.00324 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.46848 * 203.73560 * 25 16 15 46 46 H 1.08992 * 109.47052 * 323.73645 * 25 16 15 47 47 H 1.09000 * 109.46772 * 186.23551 * 26 25 16 48 48 H 1.09002 * 109.46839 * 306.22822 * 26 25 16 49 49 H 0.96701 * 113.99864 * 180.02562 * 27 26 25 50 50 H 1.08997 * 109.49563 * 301.41430 * 28 15 14 51 51 H 1.08996 * 109.49859 * 181.31197 * 28 15 14 52 52 H 1.09008 * 109.59000 * 353.37044 * 29 12 10 53 53 H 1.09003 * 109.58905 * 113.65251 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7242 1.2481 5 8 3.4694 -0.7723 1.2175 6 6 4.0056 -1.4793 0.0973 7 6 3.5729 -0.7855 -1.1969 8 6 2.0431 -0.7251 -1.2478 9 1 1.6390 -1.7370 -1.2737 10 6 1.6091 0.0247 -2.4809 11 8 1.3103 1.1976 -2.4035 12 7 1.5528 -0.6080 -3.6695 13 6 1.8282 -2.0481 -3.7647 14 6 0.6454 -2.7260 -4.4728 15 6 0.4052 -2.0420 -5.8206 16 7 -0.6991 -2.7079 -6.5157 17 6 -1.9417 -2.7524 -5.9420 18 1 -2.0387 -2.8465 -4.8705 19 6 -3.0766 -2.6767 -6.7377 20 7 -4.2202 -3.1599 -6.3007 21 14 -2.9809 -1.8888 -8.4287 22 1 -2.6790 -2.9301 -9.4436 23 1 -4.2807 -1.2466 -8.7499 24 1 -1.9066 -0.8634 -8.4370 25 6 -0.4740 -3.3263 -7.8246 26 6 0.0960 -4.7331 -7.6327 27 8 -0.8870 -5.5650 -7.0134 28 6 0.0504 -0.5708 -5.5920 29 6 1.2210 0.1303 -4.8957 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7149 -0.1879 2.1390 34 1 1.6439 -1.7389 1.2682 35 1 5.0938 -1.4871 0.1594 36 1 3.6337 -2.5039 0.1024 37 1 3.9784 0.2259 -1.2211 38 1 3.9448 -1.3477 -2.0535 39 1 2.7414 -2.2084 -4.3380 40 1 1.9445 -2.4647 -2.7643 41 1 -0.2492 -2.6391 -3.8562 42 1 0.8750 -3.7790 -4.6351 43 1 1.3084 -2.1075 -6.4272 44 1 -5.0134 -3.1066 -6.8565 45 1 -1.4187 -3.3877 -8.3648 46 1 0.2321 -2.7229 -8.3949 47 1 0.3669 -5.1508 -8.6024 48 1 0.9813 -4.6831 -6.9986 49 1 -0.5935 -6.4736 -6.8605 50 1 -0.8386 -0.5043 -4.9648 51 1 -0.1433 -0.0900 -6.5508 52 1 0.9365 1.1515 -4.6417 53 1 2.0865 0.1462 -5.5582 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098473307.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:08 Heat of formation + Delta-G solvation = -132.668652 kcal Electronic energy + Delta-G solvation = -32397.931128 eV Core-core repulsion = 28269.215925 eV Total energy + Delta-G solvation = -4128.715203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.77878 -40.03764 -39.05603 -37.72307 -36.32431 -35.40271 -33.97559 -33.31363 -32.33880 -31.91432 -29.63171 -28.10841 -27.12298 -26.24009 -24.67666 -24.07998 -23.28106 -22.84611 -21.88671 -20.92809 -19.92584 -18.63065 -18.32924 -17.94684 -17.31156 -17.15769 -17.06569 -16.49595 -16.37014 -16.07622 -15.54872 -15.43477 -15.31536 -15.15858 -15.03200 -14.54927 -14.48811 -14.29611 -14.27109 -14.03386 -13.57893 -13.55891 -13.24223 -13.11508 -13.07814 -12.90861 -12.80173 -12.52820 -12.42943 -12.25238 -12.16009 -11.97785 -11.85444 -11.72399 -11.59043 -11.41244 -11.27815 -11.18640 -10.87203 -10.65093 -10.47636 -10.31346 -9.61543 -8.69513 -8.07672 -5.39414 1.28874 1.40302 1.48651 1.60177 2.02345 2.48659 2.97776 3.09193 3.33538 3.43182 3.58351 3.73164 3.74507 3.86659 3.91392 4.08919 4.13949 4.20461 4.27488 4.32605 4.42503 4.45892 4.46365 4.48227 4.53972 4.59847 4.62212 4.62487 4.68977 4.74875 4.76137 4.78822 4.80150 4.83595 4.90305 4.91756 5.03185 5.07728 5.10392 5.15227 5.19802 5.23259 5.32238 5.45158 5.55667 5.64205 6.04417 6.27054 6.27566 6.44831 7.08512 7.18121 7.23227 7.77494 8.13965 9.13656 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016298 B = 0.003177 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.617332 B = 8812.154180 C = 9176.621241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 H 0.066 0.934 4 C 0.071 3.929 5 O -0.400 6.400 6 C 0.060 3.940 7 C -0.137 4.137 8 C -0.103 4.103 9 H 0.110 0.890 10 C 0.517 3.483 11 O -0.586 6.586 12 N -0.607 5.607 13 C 0.113 3.887 14 C -0.130 4.130 15 C 0.175 3.825 16 N -0.603 5.603 17 C -0.209 4.209 18 H 0.034 0.966 19 C -0.027 4.027 20 N -0.957 5.957 21 Si 0.933 3.067 22 H -0.278 1.278 23 H -0.322 1.322 24 H -0.256 1.256 25 C 0.113 3.887 26 C 0.065 3.935 27 O -0.579 6.579 28 C -0.132 4.132 29 C 0.121 3.879 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.254 0.746 45 H 0.036 0.964 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.377 0.623 50 H 0.029 0.971 51 H 0.059 0.941 52 H 0.067 0.933 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.798 -1.033 8.009 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.124 4.124 3 H 0.084 0.916 4 C -0.006 4.006 5 O -0.319 6.319 6 C -0.016 4.016 7 C -0.175 4.175 8 C -0.124 4.124 9 H 0.128 0.872 10 C 0.306 3.694 11 O -0.466 6.466 12 N -0.339 5.339 13 C -0.009 4.009 14 C -0.170 4.170 15 C 0.069 3.931 16 N -0.325 5.325 17 C -0.339 4.339 18 H 0.052 0.948 19 C -0.221 4.221 20 N -0.603 5.603 21 Si 0.764 3.236 22 H -0.206 1.206 23 H -0.252 1.252 24 H -0.180 1.180 25 C -0.012 4.012 26 C -0.014 4.014 27 O -0.385 6.385 28 C -0.172 4.172 29 C -0.002 4.002 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.101 0.899 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.224 0.776 50 H 0.048 0.952 51 H 0.078 0.922 52 H 0.085 0.915 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.276 0.202 8.097 22.766 hybrid contribution -1.289 -0.042 -1.276 1.814 sum 19.987 0.160 6.821 21.119 Atomic orbital electron populations 1.21746 0.94675 1.02077 1.01881 1.21563 0.96161 1.00168 0.94502 0.91579 1.22704 0.80488 1.00389 0.97012 1.87917 1.20773 1.76950 1.46294 1.22774 1.00314 0.94932 0.83582 1.22154 0.91593 1.02787 1.00996 1.21521 0.98736 1.00587 0.91591 0.87237 1.21044 0.76193 0.87045 0.85078 1.90642 1.51152 1.18772 1.86084 1.48267 1.68131 1.10487 1.06967 1.22135 0.98077 0.77814 1.02913 1.22258 0.97328 1.00077 0.97315 1.20576 0.90158 0.89386 0.92961 1.44222 1.06681 1.62115 1.19436 1.18273 0.82628 1.41498 0.91505 0.94789 1.25884 0.95041 1.00129 1.01038 1.70023 1.01612 1.48675 1.39987 0.86083 0.75588 0.79500 0.82395 1.20552 1.25163 1.18024 1.21603 0.99314 0.92604 0.87697 1.22844 0.90753 0.91876 0.95949 1.86849 1.42656 1.25442 1.83527 1.22215 0.97317 0.98074 0.99559 1.21541 0.97705 0.95536 0.85409 0.91036 0.94850 0.91953 0.87704 0.91432 0.86695 0.91049 0.92018 0.87995 0.87910 0.87894 0.95100 0.90440 0.89315 0.93734 0.94587 0.89930 0.92824 0.92444 0.77612 0.95161 0.92202 0.91491 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.96 71.98 0.64 -2.89 16 2 C -0.10 -2.30 2.06 -10.71 -0.02 -2.32 16 3 H 0.07 1.76 7.79 -2.39 -0.02 1.75 16 4 C 0.07 1.20 6.13 72.02 0.44 1.65 16 5 O -0.40 -7.45 10.77 -148.98 -1.60 -9.06 16 6 C 0.06 0.77 6.84 72.01 0.49 1.26 16 7 C -0.14 -2.10 5.34 30.68 0.16 -1.94 16 8 C -0.10 -2.13 1.26 -11.42 -0.01 -2.14 16 9 H 0.11 1.95 6.27 -2.39 -0.01 1.93 16 10 C 0.52 14.66 6.16 87.66 0.54 15.20 16 11 O -0.59 -21.55 14.39 -3.04 -0.04 -21.60 16 12 N -0.61 -15.80 2.97 -818.06 -2.43 -18.22 16 13 C 0.11 2.25 5.94 86.51 0.51 2.76 16 14 C -0.13 -3.82 5.32 30.82 0.16 -3.65 16 15 C 0.17 5.78 2.59 45.02 0.12 5.90 16 16 N -0.60 -25.80 2.03 -677.88 -1.37 -27.18 16 17 C -0.21 -11.50 8.58 84.03 0.72 -10.78 16 18 H 0.03 2.14 7.01 -2.91 -0.02 2.12 16 19 C -0.03 -1.57 5.27 84.86 0.45 -1.12 16 20 N -0.96 -61.95 13.97 21.65 0.30 -61.64 16 21 Si 0.93 47.09 25.14 68.60 1.72 48.81 16 22 H -0.28 -13.39 6.47 99.48 0.64 -12.75 16 23 H -0.32 -16.96 7.11 99.48 0.71 -16.25 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.11 4.34 4.61 86.38 0.40 4.74 16 26 C 0.07 2.06 7.38 71.98 0.53 2.59 16 27 O -0.58 -22.30 13.49 -148.98 -2.01 -24.31 16 28 C -0.13 -4.63 5.31 30.68 0.16 -4.47 16 29 C 0.12 3.43 6.44 86.36 0.56 3.99 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.03 1.04 6.62 -2.39 -0.02 1.02 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.11 7.75 -2.39 -0.02 1.09 16 39 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.10 1.60 5.41 -2.39 -0.01 1.59 16 41 H 0.03 1.17 7.04 -2.39 -0.02 1.15 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.09 2.32 7.88 -2.39 -0.02 2.30 16 44 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 45 H 0.04 1.66 3.22 -2.39 -0.01 1.65 16 46 H 0.08 2.59 8.05 -2.39 -0.02 2.57 16 47 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.38 10.03 9.12 -74.06 -0.68 9.35 16 50 H 0.03 1.32 7.71 -2.39 -0.02 1.30 16 51 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.07 2.17 7.00 -2.38 -0.02 2.16 16 53 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -81.46 396.62 0.59 -80.87 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.16 Total: 23.53 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 5.86 Total: 8.79 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -3.50 Total: -107.04 kcal Atomic # 8 Polarization: -51.31 SS G_CDS: -3.66 Total: -54.97 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.72 Total: 48.81 kcal Total: -81.46 0.59 -80.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098473307.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.797 kcal (2) G-P(sol) polarization free energy of solvation -81.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds