Wall clock time and date at job start Tue Mar 31 2020 23:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.49241 * 2 1 4 4 C 1.53092 * 109.48050 * 120.02899 * 2 1 3 5 5 C 1.53180 * 109.16498 * 177.58926 * 4 2 1 6 6 H 1.08994 * 109.54021 * 62.97487 * 5 4 2 7 7 C 1.50697 * 109.54560 * 183.15351 * 5 4 2 8 8 O 1.21282 * 120.00287 * 20.18707 * 7 5 4 9 9 N 1.34775 * 120.00198 * 200.18901 * 7 5 4 10 10 C 1.46925 * 120.63509 * 184.53465 * 9 7 5 11 11 C 1.53186 * 108.78007 * 233.58692 * 10 9 7 12 12 C 1.53041 * 109.31098 * 305.36662 * 11 10 9 13 13 N 1.46502 * 109.45770 * 181.38484 * 12 11 10 14 14 C 1.36940 * 120.00102 * 299.96842 * 13 12 11 15 15 H 1.08005 * 119.99625 * 34.81723 * 14 13 12 16 16 C 1.38806 * 120.00413 * 214.82141 * 14 13 12 17 17 N 1.31629 * 119.99939 * 29.24835 * 16 14 13 18 18 Si 1.86800 * 120.00445 * 209.24951 * 16 14 13 19 19 H 1.48497 * 109.47335 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46829 * 299.99876 * 18 16 14 21 21 H 1.48501 * 109.46976 * 59.99823 * 18 16 14 22 22 C 1.46500 * 120.00381 * 119.97576 * 13 12 11 23 23 C 1.53009 * 109.46729 * 275.32611 * 22 13 12 24 24 O 1.42902 * 109.47078 * 64.99571 * 23 22 13 25 25 C 1.53039 * 109.52772 * 61.37337 * 12 11 10 26 26 C 1.46930 * 120.62651 * 4.51631 * 9 7 5 27 27 C 1.53173 * 109.10710 * 303.06568 * 5 4 2 28 28 C 1.53102 * 109.16071 * 56.84650 * 27 5 4 29 29 O 1.42899 * 109.47829 * 239.96921 * 2 1 3 30 30 H 1.08998 * 109.46978 * 299.97165 * 1 2 3 31 31 H 1.08997 * 109.47333 * 59.97088 * 1 2 3 32 32 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.52399 * 57.68562 * 4 2 1 34 34 H 1.09004 * 109.52378 * 297.49780 * 4 2 1 35 35 H 1.09002 * 109.58384 * 113.79675 * 10 9 7 36 36 H 1.09001 * 109.69728 * 353.44941 * 10 9 7 37 37 H 1.09000 * 109.50299 * 185.41106 * 11 10 9 38 38 H 1.09009 * 109.49663 * 65.31196 * 11 10 9 39 39 H 1.08999 * 109.45883 * 301.35479 * 12 11 10 40 40 H 0.96998 * 119.99320 * 5.32403 * 17 16 14 41 41 H 1.08996 * 109.46998 * 35.32013 * 22 13 12 42 42 H 1.08993 * 109.47396 * 155.32798 * 22 13 12 43 43 H 1.08990 * 109.47172 * 184.99443 * 23 22 13 44 44 H 1.09000 * 109.46872 * 304.99990 * 23 22 13 45 45 H 0.96698 * 114.00084 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.50245 * 58.57511 * 25 12 11 47 47 H 1.09005 * 109.49858 * 178.67877 * 25 12 11 48 48 H 1.09008 * 109.58575 * 246.19783 * 26 9 7 49 49 H 1.08998 * 109.58850 * 6.48328 * 26 9 7 50 50 H 1.09007 * 109.52470 * 176.83875 * 27 5 4 51 51 H 1.08999 * 109.52499 * 297.02449 * 27 5 4 52 52 H 1.08998 * 109.48718 * 182.49644 * 28 27 5 53 53 H 1.08999 * 109.41601 * 62.51118 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 3.5711 -0.7710 1.2122 6 1 3.9690 0.2433 1.2424 7 6 4.0800 -1.5477 2.3991 8 8 3.3432 -2.3133 2.9839 9 7 5.3538 -1.3916 2.8107 10 6 5.8938 -2.2133 3.9025 11 6 6.4849 -1.2876 4.9704 12 6 7.5089 -0.3543 4.3205 13 7 8.1005 0.5101 5.3448 14 6 7.3034 1.3510 6.0748 15 1 6.3022 1.0480 6.3437 16 6 7.7821 2.5928 6.4691 17 7 8.6811 3.2147 5.7358 18 14 7.1507 3.3815 8.0402 19 1 7.8137 4.6958 8.2355 20 1 5.6823 3.5786 7.9396 21 1 7.4536 2.4974 9.1943 22 6 9.5447 0.4751 5.5881 23 6 9.8709 -0.6622 6.5583 24 8 9.5602 -1.9151 5.9453 25 6 6.8161 0.5085 3.2633 26 6 6.2291 -0.3968 2.1758 27 6 4.0194 -1.4589 -0.0809 28 6 3.4307 -0.7094 -1.2790 29 8 2.0065 -0.6742 -1.1664 30 1 -0.3633 0.5134 0.8902 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6443 -1.7375 1.2710 34 1 1.7148 -0.1843 2.1399 35 1 6.6735 -2.8690 3.5151 36 1 5.0958 -2.8133 4.3400 37 1 6.9740 -1.8852 5.7397 38 1 5.6877 -0.6959 5.4207 39 1 8.2926 -0.9471 3.8489 40 1 8.9520 2.8427 4.8820 41 1 10.0679 0.3104 4.6462 42 1 9.8635 1.4237 6.0199 43 1 10.9313 -0.6333 6.8086 44 1 9.2798 -0.5456 7.4667 45 1 9.7427 -2.6826 6.5046 46 1 6.0159 1.0830 3.7298 47 1 7.5411 1.1894 2.8172 48 1 7.0363 -0.9044 1.6476 49 1 5.6513 0.2019 1.4717 50 1 5.1078 -1.4473 -0.1413 51 1 3.6644 -2.4895 -0.0872 52 1 3.7099 -1.2204 -2.2005 53 1 3.8192 0.3088 -1.2960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098512184.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:25 Heat of formation + Delta-G solvation = -143.282732 kcal Electronic energy + Delta-G solvation = -32069.663862 eV Core-core repulsion = 27940.488398 eV Total energy + Delta-G solvation = -4129.175464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.72910 -40.09472 -39.11601 -37.75637 -36.47429 -34.94717 -33.90866 -33.59410 -32.04884 -31.97404 -29.41769 -28.86582 -26.73567 -25.90983 -24.74167 -24.08055 -23.55567 -22.37024 -21.83898 -21.19331 -20.00617 -18.90679 -18.18445 -18.16626 -17.30341 -17.21005 -16.72710 -16.69363 -16.19466 -15.82365 -15.71180 -15.52298 -15.34949 -15.16221 -15.02268 -14.67052 -14.58282 -14.19070 -14.00280 -13.90039 -13.55933 -13.50196 -13.25322 -13.13845 -12.91975 -12.80016 -12.58117 -12.46969 -12.39609 -12.23604 -12.15537 -12.10683 -11.93531 -11.77561 -11.62786 -11.52101 -11.37417 -11.14560 -10.89596 -10.74713 -10.38689 -10.35112 -9.69764 -8.78020 -8.14431 -5.39304 1.51396 1.57620 1.61141 1.81147 1.94753 2.64509 2.83287 3.18706 3.33056 3.46253 3.58954 3.65774 3.71661 3.83057 3.90809 4.06975 4.12419 4.17173 4.19773 4.31923 4.37943 4.41327 4.43466 4.46216 4.50353 4.53263 4.58006 4.65212 4.67053 4.71735 4.78228 4.79416 4.81224 4.83365 4.96049 5.01221 5.03527 5.06877 5.11351 5.18748 5.22017 5.26662 5.29834 5.41332 5.53318 5.62732 6.00727 6.28575 6.37399 6.47241 7.00907 7.08575 7.17983 7.85458 8.31799 9.01646 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.003114 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.484710 B = 8989.159332 C = 9922.334626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.071 0.929 4 C -0.128 4.128 5 C -0.107 4.107 6 H 0.109 0.891 7 C 0.516 3.484 8 O -0.587 6.587 9 N -0.604 5.604 10 C 0.122 3.878 11 C -0.117 4.117 12 C 0.188 3.812 13 N -0.595 5.595 14 C -0.338 4.338 15 H 0.029 0.971 16 C -0.060 4.060 17 N -0.925 5.925 18 Si 1.095 2.905 19 H -0.290 1.290 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.140 3.860 23 C 0.072 3.928 24 O -0.575 6.575 25 C -0.130 4.130 26 C 0.116 3.884 27 C -0.137 4.137 28 C 0.063 3.937 29 O -0.396 6.396 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.257 0.743 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.025 0.975 45 H 0.383 0.617 46 H 0.035 0.965 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.098 0.902 51 H 0.063 0.937 52 H 0.116 0.884 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 -8.290 -12.592 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.031 3.969 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.128 4.128 6 H 0.127 0.873 7 C 0.305 3.695 8 O -0.468 6.468 9 N -0.335 5.335 10 C -0.001 4.001 11 C -0.157 4.157 12 C 0.082 3.918 13 N -0.316 5.316 14 C -0.468 4.468 15 H 0.047 0.953 16 C -0.259 4.259 17 N -0.565 5.565 18 Si 0.922 3.078 19 H -0.216 1.216 20 H -0.212 1.212 21 H -0.211 1.211 22 C 0.014 3.986 23 C -0.008 4.008 24 O -0.381 6.381 25 C -0.170 4.170 26 C -0.007 4.007 27 C -0.175 4.175 28 C -0.014 4.014 29 O -0.316 6.316 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.231 0.769 46 H 0.054 0.946 47 H 0.077 0.923 48 H 0.110 0.890 49 H 0.123 0.877 50 H 0.116 0.884 51 H 0.082 0.918 52 H 0.134 0.866 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.147 -7.062 -11.892 15.135 hybrid contribution 0.267 -1.370 0.422 1.458 sum -5.880 -8.432 -11.469 15.402 Atomic orbital electron populations 1.21772 0.92055 1.02911 1.03350 1.22165 0.96028 0.95043 0.83691 0.91091 1.22048 0.93221 1.02154 0.99216 1.21445 0.97488 1.00663 0.93209 0.87327 1.21095 0.80885 0.82192 0.85305 1.90634 1.56563 1.40791 1.58834 1.48244 1.11723 1.37998 1.35580 1.21522 0.98210 0.92949 0.87432 1.22034 0.98278 0.97562 0.97794 1.20303 0.93205 0.90271 0.88032 1.44001 1.02672 1.44791 1.40093 1.19696 0.99115 0.96945 1.31080 0.95312 1.26732 1.00064 0.93448 1.05638 1.70907 1.35828 1.37721 1.12081 0.83102 0.75403 0.75277 0.74048 1.21608 1.21227 1.21051 1.20977 0.85033 0.96257 0.96374 1.22677 0.97228 0.84937 0.95935 1.86472 1.89578 1.15904 1.46156 1.22190 0.99633 0.98278 0.96893 1.21968 0.94257 0.89750 0.94717 1.22149 1.02689 1.00043 0.92665 1.22728 0.80027 1.00631 0.97986 1.87915 1.22215 1.78302 1.43153 0.90072 0.90892 0.92418 0.91827 0.91338 0.89838 0.91011 0.91577 0.95587 0.92150 0.93313 0.94646 0.91898 0.93140 0.95698 0.76926 0.94618 0.92287 0.89032 0.87748 0.88403 0.91823 0.86585 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.56 71.98 0.69 -1.68 16 2 C 0.09 1.68 3.26 30.63 0.10 1.78 16 3 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.13 -3.00 4.24 30.69 0.13 -2.87 16 5 C -0.11 -2.44 1.76 -11.42 -0.02 -2.46 16 6 H 0.11 2.19 6.32 -2.39 -0.02 2.17 16 7 C 0.52 15.83 6.86 87.66 0.60 16.43 16 8 O -0.59 -22.55 15.40 -3.04 -0.05 -22.59 16 9 N -0.60 -17.85 2.97 -818.90 -2.43 -20.28 16 10 C 0.12 3.87 6.43 86.36 0.56 4.42 16 11 C -0.12 -4.41 5.30 30.67 0.16 -4.25 16 12 C 0.19 7.36 1.96 45.02 0.09 7.44 16 13 N -0.59 -27.62 2.16 -677.88 -1.47 -29.09 16 14 C -0.34 -17.94 8.15 84.03 0.68 -17.25 16 15 H 0.03 1.64 6.93 -2.91 -0.02 1.62 16 16 C -0.06 -3.25 4.70 84.86 0.40 -2.85 16 17 N -0.92 -52.71 12.24 21.65 0.27 -52.44 16 18 Si 1.09 49.92 30.01 68.60 2.06 51.98 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 C 0.14 6.13 5.18 86.38 0.45 6.58 16 23 C 0.07 2.62 7.39 71.99 0.53 3.16 16 24 O -0.57 -18.44 12.20 -148.98 -1.82 -20.25 16 25 C -0.13 -4.66 5.30 30.67 0.16 -4.49 16 26 C 0.12 2.95 5.80 86.36 0.50 3.45 16 27 C -0.14 -2.45 5.31 30.69 0.16 -2.28 16 28 C 0.06 0.94 6.84 72.02 0.49 1.44 16 29 O -0.40 -8.07 10.41 -148.98 -1.55 -9.62 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.74 7.79 -2.39 -0.02 1.72 16 34 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.46 7.01 -2.39 -0.02 2.44 16 37 H 0.07 2.55 7.61 -2.39 -0.02 2.53 16 38 H 0.03 1.14 7.04 -2.38 -0.02 1.13 16 39 H 0.06 2.28 7.60 -2.39 -0.02 2.27 16 40 H 0.26 14.82 7.44 -92.71 -0.69 14.13 16 41 H 0.04 1.49 8.03 -2.39 -0.02 1.47 16 42 H 0.06 3.14 5.61 -2.39 -0.01 3.13 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.38 8.42 9.12 -74.06 -0.68 7.74 16 46 H 0.03 1.51 7.71 -2.39 -0.02 1.50 16 47 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 48 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 49 H 0.10 2.12 5.34 -2.39 -0.01 2.11 16 50 H 0.10 1.40 7.57 -2.38 -0.02 1.38 16 51 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 53 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.21 401.74 0.99 -68.22 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.30 Total: 27.52 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.69 Total: 6.56 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -3.64 Total: -101.81 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -3.41 Total: -52.47 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.06 Total: 51.98 kcal Total: -69.21 0.99 -68.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098512184.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.062 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds