Wall clock time and date at job start Tue Mar 31 2020 23:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47983 * 2 1 4 4 C 1.53088 * 109.47644 * 239.97588 * 2 1 3 5 5 C 1.53178 * 109.15977 * 182.40760 * 4 2 1 6 6 H 1.08999 * 109.54579 * 176.85056 * 5 4 2 7 7 C 1.50697 * 109.54511 * 297.02551 * 5 4 2 8 8 O 1.21286 * 120.00061 * 9.22123 * 7 5 4 9 9 N 1.34777 * 120.00077 * 189.21797 * 7 5 4 10 10 C 1.46924 * 120.63131 * 5.46559 * 9 7 5 11 11 C 1.52763 * 109.00823 * 233.58302 * 10 9 7 12 12 C 1.53043 * 109.38345 * 305.58817 * 11 10 9 13 13 N 1.46505 * 109.44952 * 181.25382 * 12 11 10 14 14 C 1.36938 * 119.99986 * 299.93772 * 13 12 11 15 15 H 1.07997 * 119.99644 * 319.94783 * 14 13 12 16 16 C 1.38806 * 120.00063 * 139.94403 * 14 13 12 17 17 N 1.31614 * 120.00176 * 343.18844 * 16 14 13 18 18 Si 1.86796 * 120.00029 * 163.18885 * 16 14 13 19 19 H 1.48501 * 109.47378 * 60.00059 * 18 16 14 20 20 H 1.48502 * 109.47442 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47369 * 299.99990 * 18 16 14 22 22 C 1.46493 * 119.99887 * 119.93612 * 13 12 11 23 23 C 1.52997 * 109.47207 * 84.54903 * 22 13 12 24 24 O 1.42898 * 109.47479 * 64.99734 * 23 22 13 25 25 C 1.53043 * 109.53850 * 61.24068 * 12 11 10 26 26 C 1.46931 * 120.63099 * 185.74293 * 9 7 5 27 27 C 1.53177 * 109.03858 * 56.98424 * 5 4 2 28 28 C 1.53088 * 109.16096 * 303.02023 * 27 5 4 29 29 O 1.42903 * 109.42759 * 57.60096 * 28 27 5 30 30 H 1.09004 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47054 * 300.00065 * 1 2 3 32 32 H 1.09002 * 109.47529 * 59.99769 * 1 2 3 33 33 H 1.08998 * 109.52725 * 302.31250 * 4 2 1 34 34 H 1.09001 * 109.52357 * 62.50351 * 4 2 1 35 35 H 1.09002 * 109.58668 * 353.41339 * 10 9 7 36 36 H 1.08999 * 109.59001 * 113.84295 * 10 9 7 37 37 H 1.09001 * 109.56474 * 185.55069 * 11 10 9 38 38 H 1.09005 * 109.36332 * 65.49977 * 11 10 9 39 39 H 1.09005 * 109.45581 * 301.21636 * 12 11 10 40 40 H 0.97001 * 120.00353 * 179.97438 * 17 16 14 41 41 H 1.09005 * 109.47186 * 204.55017 * 22 13 12 42 42 H 1.09001 * 109.47688 * 324.54290 * 22 13 12 43 43 H 1.08999 * 109.47166 * 184.99928 * 23 22 13 44 44 H 1.08999 * 109.47161 * 304.99894 * 23 22 13 45 45 H 0.96694 * 114.00664 * 180.02562 * 24 23 22 46 46 H 1.08998 * 109.49348 * 178.68776 * 25 12 11 47 47 H 1.09000 * 109.52415 * 58.60048 * 25 12 11 48 48 H 1.09002 * 109.58692 * 246.15896 * 26 9 7 49 49 H 1.08999 * 109.58314 * 6.44162 * 26 9 7 50 50 H 1.09001 * 109.51980 * 62.92057 * 27 5 4 51 51 H 1.09000 * 109.52513 * 183.11155 * 27 5 4 52 52 H 1.09008 * 109.48240 * 177.59060 * 28 27 5 53 53 H 1.09003 * 109.48210 * 297.61465 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0404 -0.7222 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 1 3.9391 -1.3324 -2.0708 7 6 4.1211 0.6316 -1.2539 8 8 3.3737 1.5799 -1.1396 9 7 5.4437 0.8320 -1.4182 10 6 6.3457 -0.2984 -1.6773 11 6 7.4795 -0.2750 -0.6537 12 6 8.1625 1.0942 -0.6835 13 7 9.2692 1.1083 0.2764 14 6 9.0251 0.8901 1.6061 15 1 8.1516 1.3212 2.0725 16 6 9.9002 0.1149 2.3543 17 7 10.7631 -0.6734 1.7492 18 14 9.8531 0.1903 4.2202 19 1 8.5093 -0.2226 4.6986 20 1 10.8798 -0.7257 4.7788 21 1 10.1324 1.5788 4.6667 22 6 10.6370 1.3558 -0.1862 23 6 10.8789 2.8636 -0.2793 24 8 10.8120 3.4384 1.0273 25 6 7.1501 2.1795 -0.3103 26 6 6.0119 2.1846 -1.3357 27 6 4.0176 -1.4601 0.0807 28 6 3.4307 -0.7095 1.2789 29 8 2.0066 -0.6741 1.1665 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.6442 -1.7374 -1.2711 34 1 1.7147 -0.1841 -2.1399 35 1 5.7939 -1.2342 -1.5878 36 1 6.7616 -0.2116 -2.6810 37 1 8.2067 -1.0498 -0.8967 38 1 7.0722 -0.4568 0.3410 39 1 8.5480 1.2859 -1.6850 40 1 11.3749 -1.2149 2.2721 41 1 11.3438 0.9171 0.5182 42 1 10.7757 0.9042 -1.1686 43 1 11.8644 3.0477 -0.7071 44 1 10.1169 3.3154 -0.9143 45 1 10.9560 4.3944 1.0444 46 1 7.6429 3.1517 -0.3091 47 1 6.7458 1.9752 0.6811 48 1 6.3999 2.4781 -2.3111 49 1 5.2391 2.8870 -1.0234 50 1 3.6612 -2.4902 0.0860 51 1 5.1058 -1.4499 0.1418 52 1 3.7100 -1.2206 2.2004 53 1 3.8194 0.3087 1.2959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098512185.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:29 Heat of formation + Delta-G solvation = -133.196775 kcal Electronic energy + Delta-G solvation = -32785.276118 eV Core-core repulsion = 28656.538014 eV Total energy + Delta-G solvation = -4128.738104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.95931 -39.91234 -38.77869 -37.64003 -36.25127 -34.93058 -33.85769 -33.47974 -31.99293 -31.89196 -29.42974 -28.83772 -26.77387 -25.81395 -24.74301 -24.00028 -23.43641 -22.56734 -21.88790 -21.20052 -19.69227 -18.30261 -18.17756 -17.78613 -17.30704 -17.13785 -16.78700 -16.63114 -16.34306 -16.07467 -15.62109 -15.55115 -15.18168 -14.85493 -14.68678 -14.66424 -14.49795 -14.06922 -13.87693 -13.55380 -13.42948 -13.26134 -13.19301 -13.09130 -12.95545 -12.89259 -12.74859 -12.69283 -12.55060 -12.37649 -12.08186 -12.03107 -11.82274 -11.70674 -11.61988 -11.54892 -11.37688 -11.11735 -10.71749 -10.62537 -10.39354 -10.14138 -9.59062 -8.38752 -7.72176 -5.33199 1.43416 1.47129 1.52745 1.57502 2.05503 2.55883 2.84077 3.38381 3.42848 3.57568 3.66620 3.76881 3.83965 3.92034 3.97922 4.07005 4.16843 4.25478 4.26632 4.37254 4.45624 4.47126 4.55349 4.57659 4.62279 4.64768 4.69764 4.71556 4.79338 4.81662 4.83452 4.85285 4.90775 4.94014 4.97252 5.04424 5.05528 5.10776 5.17795 5.22194 5.25268 5.33245 5.48029 5.64038 5.70894 5.76120 5.86844 6.30064 6.45869 6.59196 7.17132 7.19985 7.31628 7.99397 8.49382 9.24252 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.003640 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.381948 B = 7690.867678 C = 8651.550408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.061 3.939 3 H 0.062 0.938 4 C -0.121 4.121 5 C -0.108 4.108 6 H 0.129 0.871 7 C 0.514 3.486 8 O -0.577 6.577 9 N -0.603 5.603 10 C 0.111 3.889 11 C -0.124 4.124 12 C 0.174 3.826 13 N -0.583 5.583 14 C -0.220 4.220 15 H 0.035 0.965 16 C -0.025 4.025 17 N -0.917 5.917 18 Si 0.936 3.064 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.291 1.291 22 C 0.141 3.859 23 C 0.066 3.934 24 O -0.578 6.578 25 C -0.123 4.123 26 C 0.122 3.878 27 C -0.143 4.143 28 C 0.060 3.940 29 O -0.395 6.395 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.045 0.955 44 H 0.039 0.961 45 H 0.374 0.626 46 H 0.061 0.939 47 H 0.032 0.968 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.082 0.918 52 H 0.100 0.900 53 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 -0.340 -11.721 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.004 3.996 3 H 0.079 0.921 4 C -0.158 4.158 5 C -0.129 4.129 6 H 0.146 0.854 7 C 0.303 3.697 8 O -0.458 6.458 9 N -0.335 5.335 10 C -0.012 4.012 11 C -0.164 4.164 12 C 0.068 3.932 13 N -0.303 5.303 14 C -0.352 4.352 15 H 0.052 0.948 16 C -0.221 4.221 17 N -0.563 5.563 18 Si 0.766 3.234 19 H -0.207 1.207 20 H -0.220 1.220 21 H -0.218 1.218 22 C 0.015 3.985 23 C -0.014 4.014 24 O -0.382 6.382 25 C -0.163 4.163 26 C -0.001 4.001 27 C -0.181 4.181 28 C -0.017 4.017 29 O -0.315 6.315 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.220 0.780 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.103 0.897 49 H 0.090 0.910 50 H 0.123 0.877 51 H 0.101 0.899 52 H 0.118 0.882 53 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -12.664 -0.675 -11.309 16.991 hybrid contribution 0.970 0.966 1.277 1.872 sum -11.694 0.291 -10.032 15.410 Atomic orbital electron populations 1.21733 0.91938 1.03102 1.02650 1.22569 0.96000 0.96254 0.84742 0.92056 1.21982 0.92589 1.02521 0.98744 1.21481 0.97633 0.92502 1.01305 0.85351 1.21105 0.81658 0.92101 0.74787 1.90574 1.57849 1.45351 1.51992 1.48233 1.06708 1.08792 1.69783 1.21946 0.90817 0.89063 0.99328 1.22051 0.96870 0.99077 0.98410 1.20492 0.87886 0.92623 0.92241 1.43804 1.01893 1.81525 1.03072 1.18626 1.08301 1.22188 0.86039 0.94758 1.25527 1.00367 0.96168 1.00073 1.70010 1.24467 1.27134 1.34665 0.85854 0.76940 0.76710 0.83876 1.20739 1.21987 1.21768 1.20936 0.88564 0.91165 0.97812 1.22940 0.97976 0.96909 0.83570 1.86768 1.95471 1.25905 1.30101 1.22145 0.96279 1.00063 0.97842 1.21530 0.95317 0.83660 0.99609 1.22242 1.02006 1.01071 0.92796 1.22508 0.81091 0.98551 0.99566 1.87854 1.20897 1.78248 1.44516 0.91165 0.92735 0.89870 0.88637 0.90092 0.87808 0.89175 0.92101 0.94051 0.91592 0.94478 0.92033 0.93306 0.93728 0.94324 0.78008 0.91991 0.94934 0.89702 0.91029 0.87708 0.89917 0.88191 0.96133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.56 71.98 0.69 -2.07 16 2 C 0.06 1.58 2.98 30.62 0.09 1.67 16 3 H 0.06 1.97 5.49 -2.39 -0.01 1.96 16 4 C -0.12 -2.46 4.59 30.68 0.14 -2.32 16 5 C -0.11 -2.29 2.16 -11.42 -0.02 -2.31 16 6 H 0.13 1.94 7.19 -2.39 -0.02 1.92 16 7 C 0.51 14.33 5.74 87.66 0.50 14.84 16 8 O -0.58 -19.66 13.03 -3.05 -0.04 -19.70 16 9 N -0.60 -16.23 2.98 -819.72 -2.44 -18.67 16 10 C 0.11 2.60 5.49 86.22 0.47 3.07 16 11 C -0.12 -4.14 5.16 30.53 0.16 -3.98 16 12 C 0.17 6.29 2.60 45.02 0.12 6.41 16 13 N -0.58 -26.50 2.31 -677.88 -1.56 -28.06 16 14 C -0.22 -11.63 8.00 84.03 0.67 -10.96 16 15 H 0.03 1.93 6.90 -2.91 -0.02 1.91 16 16 C -0.02 -1.36 5.00 84.86 0.42 -0.94 16 17 N -0.92 -52.01 11.45 21.65 0.25 -51.76 16 18 Si 0.94 45.92 29.59 68.60 2.03 47.95 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 21 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 22 C 0.14 6.20 5.55 86.38 0.48 6.68 16 23 C 0.07 2.38 7.39 71.98 0.53 2.91 16 24 O -0.58 -23.18 13.39 -148.98 -2.00 -25.18 16 25 C -0.12 -4.25 5.30 30.67 0.16 -4.09 16 26 C 0.12 3.48 6.42 86.36 0.55 4.03 16 27 C -0.14 -3.21 5.25 30.68 0.16 -3.05 16 28 C 0.06 1.68 6.62 72.01 0.48 2.16 16 29 O -0.40 -11.43 10.41 -148.98 -1.55 -12.98 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.10 1.97 4.66 -2.39 -0.01 1.96 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.04 1.63 7.11 -2.38 -0.02 1.61 16 39 H 0.07 2.13 7.87 -2.38 -0.02 2.11 16 40 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.06 3.25 5.61 -2.38 -0.01 3.24 16 42 H 0.05 1.95 8.04 -2.39 -0.02 1.93 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.37 10.62 9.12 -74.06 -0.68 9.94 16 46 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.03 1.33 7.08 -2.39 -0.02 1.32 16 48 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.07 2.24 7.04 -2.39 -0.02 2.22 16 50 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.08 1.99 5.47 -2.39 -0.01 1.97 16 52 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 53 H 0.02 0.69 7.38 -2.39 -0.02 0.67 16 Total: -1.00 -69.32 395.36 0.52 -68.80 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.23 Total: 27.57 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.61 Total: 12.05 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -3.76 Total: -98.49 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -3.59 Total: -57.86 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -69.32 0.52 -68.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098512185.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.400 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds