Wall clock time and date at job start Wed Apr 1 2020 00:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.55033 * 2 1 4 4 C 1.53289 * 109.51213 * 239.87444 * 2 1 3 5 5 N 1.47152 * 108.37697 * 187.72934 * 4 2 1 6 6 C 1.34779 * 120.99041 * 230.57179 * 5 4 2 7 7 O 1.21284 * 119.99665 * 180.02562 * 6 5 4 8 8 C 1.50698 * 119.99952 * 0.02562 * 6 5 4 9 9 C 1.53001 * 109.46954 * 185.97268 * 8 6 5 10 10 C 1.53000 * 109.47127 * 58.75841 * 9 8 6 11 11 C 1.53000 * 109.47046 * 178.75885 * 9 8 6 12 12 O 1.42904 * 109.47163 * 298.75932 * 9 8 6 13 13 C 1.47152 * 118.02164 * 50.59701 * 5 4 2 14 14 C 1.53258 * 108.40493 * 309.51252 * 13 5 4 15 15 C 1.52983 * 109.38734 * 292.19245 * 14 13 5 16 16 C 1.53193 * 109.35868 * 178.89639 * 15 14 13 17 17 N 1.46932 * 108.77608 * 54.56297 * 16 15 14 18 18 C 1.36939 * 120.64054 * 126.31244 * 17 16 15 19 19 H 1.07998 * 119.99586 * 210.22779 * 18 17 16 20 20 C 1.38806 * 120.00191 * 30.22771 * 18 17 16 21 21 N 1.31621 * 120.00176 * 11.92012 * 20 18 17 22 22 Si 1.86798 * 120.00197 * 191.92246 * 20 18 17 23 23 H 1.48505 * 109.47097 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47263 * 119.99927 * 22 20 18 25 25 H 1.48493 * 109.47328 * 239.99950 * 22 20 18 26 26 C 1.46924 * 118.71560 * 306.33393 * 17 16 15 27 27 C 1.52989 * 109.36203 * 172.10921 * 14 13 5 28 28 O 1.42899 * 109.32286 * 52.16257 * 14 13 5 29 29 H 1.09001 * 109.47110 * 299.87659 * 1 2 3 30 30 H 1.08994 * 109.47052 * 59.88321 * 1 2 3 31 31 H 1.09004 * 109.46642 * 179.88177 * 1 2 3 32 32 H 1.09001 * 109.68722 * 307.45428 * 4 2 1 33 33 H 1.09003 * 109.68081 * 68.01362 * 4 2 1 34 34 H 1.09001 * 109.47161 * 305.97619 * 8 6 5 35 35 H 1.08998 * 109.46945 * 65.97784 * 8 6 5 36 36 H 1.09003 * 109.46944 * 59.99796 * 10 9 8 37 37 H 1.09000 * 109.47146 * 179.97438 * 10 9 8 38 38 H 1.09001 * 109.47272 * 299.99814 * 10 9 8 39 39 H 1.09004 * 109.47267 * 64.71841 * 11 9 8 40 40 H 1.08993 * 109.47077 * 184.71941 * 11 9 8 41 41 H 1.08997 * 109.47010 * 304.72059 * 11 9 8 42 42 H 0.96698 * 113.99858 * 60.00126 * 12 9 8 43 43 H 1.08997 * 109.68202 * 189.77884 * 13 5 4 44 44 H 1.08998 * 109.67825 * 69.23790 * 13 5 4 45 45 H 1.09003 * 109.49170 * 58.93745 * 15 14 13 46 46 H 1.08996 * 109.50964 * 298.87663 * 15 14 13 47 47 H 1.08999 * 109.58980 * 174.35016 * 16 15 14 48 48 H 1.09003 * 109.58919 * 294.77917 * 16 15 14 49 49 H 0.97001 * 120.00335 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58418 * 293.88017 * 26 17 16 51 51 H 1.09003 * 109.58529 * 173.46432 * 26 17 16 52 52 H 1.09007 * 109.48985 * 301.09015 * 27 14 13 53 53 H 1.09000 * 109.49428 * 61.15558 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 -1.2497 5 7 3.5013 -0.8751 -1.1339 6 6 4.3191 -0.5018 -2.1380 7 8 5.5193 -0.6339 -2.0235 8 6 3.7423 0.0797 -3.4030 9 6 4.8599 0.2781 -4.4289 10 6 5.5332 -1.0655 -4.7158 11 6 4.2696 0.8395 -5.7240 12 8 5.8263 1.1939 -3.9096 13 6 4.0411 -1.4453 0.1107 14 6 3.4306 -0.6877 1.2947 15 6 3.9557 0.7492 1.3034 16 6 3.3239 1.5138 2.4709 17 7 3.5750 0.7712 3.7136 18 6 4.1594 1.3866 4.7884 19 1 4.7711 0.8153 5.4708 20 6 3.9654 2.7445 5.0007 21 7 3.0439 3.3921 4.3196 22 14 5.0122 3.6530 6.2529 23 1 5.9691 2.7054 6.8789 24 1 5.7643 4.7392 5.5746 25 1 4.1362 4.2369 7.3001 26 6 3.1875 -0.6444 3.7807 27 6 3.8209 -1.3855 2.5990 28 8 2.0075 -0.6762 1.1657 29 1 -0.3633 0.5119 0.8911 30 1 -0.3633 0.5156 -0.8889 31 1 -0.3633 -1.0277 -0.0021 32 1 1.5764 -1.7082 -1.3205 33 1 1.8025 -0.1401 -2.1376 34 1 2.9941 -0.6016 -3.8078 35 1 3.2773 1.0405 -3.1820 36 1 4.7961 -1.7640 -5.1119 37 1 6.3291 -0.9243 -5.4471 38 1 5.9538 -1.4655 -3.7932 39 1 3.8638 1.8339 -5.5372 40 1 5.0503 0.9022 -6.4819 41 1 3.4739 0.1826 -6.0753 42 1 6.2425 0.9019 -3.0871 43 1 5.1254 -1.3359 0.1246 44 1 3.7775 -2.5010 0.1753 45 1 3.6940 1.2377 0.3647 46 1 5.0395 0.7399 1.4187 47 1 3.7695 2.5060 2.5417 48 1 2.2496 1.6040 2.3099 49 1 2.9080 4.3410 4.4682 50 1 2.1022 -0.7291 3.7258 51 1 3.5430 -1.0766 4.7161 52 1 3.4634 -2.4152 2.5817 53 1 4.9057 -1.3786 2.7047 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098591916.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:56 Heat of formation + Delta-G solvation = -129.436920 kcal Electronic energy + Delta-G solvation = -32920.082921 eV Core-core repulsion = 28791.507856 eV Total energy + Delta-G solvation = -4128.575065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.02675 -40.62235 -38.41780 -37.84379 -35.80801 -35.14391 -33.70172 -33.17218 -31.83406 -31.28916 -30.02261 -28.19426 -28.13123 -27.23644 -25.72140 -24.20447 -23.19367 -22.32416 -21.44862 -20.57913 -20.07870 -18.90034 -18.36517 -17.77342 -17.11895 -17.02408 -16.83258 -16.66015 -16.15704 -15.92185 -15.50905 -15.47464 -15.26801 -15.01419 -14.87799 -14.76314 -14.33228 -13.84052 -13.61859 -13.34293 -13.29216 -13.17141 -13.09912 -13.05619 -12.99642 -12.92333 -12.84929 -12.76650 -12.65735 -12.56449 -12.44383 -12.21762 -12.00329 -11.95481 -11.84983 -11.75413 -11.42183 -11.24840 -10.93323 -10.79655 -10.64613 -10.55876 -9.52531 -8.64236 -7.87872 -5.37398 1.43703 1.45199 1.48265 1.55779 1.82811 2.48562 2.70986 3.27009 3.32666 3.37715 3.58008 3.68329 3.70919 3.84169 3.89506 3.93963 4.03609 4.13974 4.20628 4.24029 4.40477 4.44370 4.48007 4.51561 4.59764 4.61994 4.67297 4.68858 4.76106 4.76448 4.84725 4.92100 4.93338 4.95739 5.02714 5.04609 5.05661 5.12121 5.14781 5.25603 5.32195 5.34740 5.36150 5.44571 5.47196 5.62359 5.71836 6.27858 6.36278 6.40483 6.71683 7.08850 7.14411 7.84973 8.38323 9.17985 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.003371 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.925662 B = 8303.415176 C = 9020.209802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.043 0.957 4 C 0.082 3.918 5 N -0.609 5.609 6 C 0.514 3.486 7 O -0.574 6.574 8 C -0.164 4.164 9 C 0.133 3.867 10 C -0.184 4.184 11 C -0.137 4.137 12 O -0.587 6.587 13 C 0.097 3.903 14 C 0.126 3.874 15 C -0.143 4.143 16 C 0.196 3.804 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.149 3.851 27 C -0.110 4.110 28 O -0.374 6.374 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.099 0.901 42 H 0.382 0.618 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.046 0.954 48 H -0.003 1.003 49 H 0.249 0.751 50 H 0.015 0.985 51 H 0.055 0.945 52 H 0.091 0.909 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -11.650 -20.205 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.002 3.998 3 H 0.061 0.939 4 C -0.040 4.040 5 N -0.341 5.341 6 C 0.305 3.695 7 O -0.456 6.456 8 C -0.204 4.204 9 C 0.093 3.907 10 C -0.241 4.241 11 C -0.194 4.194 12 O -0.398 6.398 13 C -0.026 4.026 14 C 0.085 3.915 15 C -0.183 4.183 16 C 0.070 3.930 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.190 1.190 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.024 3.976 27 C -0.149 4.149 28 O -0.294 6.294 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.234 0.766 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.015 0.985 49 H 0.058 0.942 50 H 0.033 0.967 51 H 0.073 0.927 52 H 0.110 0.890 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.304 -11.335 -20.504 23.820 hybrid contribution 0.883 0.860 1.522 1.958 sum -3.421 -10.475 -18.982 21.949 Atomic orbital electron populations 1.21699 0.90607 1.03755 1.03163 1.22631 0.96781 0.95145 0.85246 0.93928 1.22722 0.78330 1.03327 0.99575 1.48240 1.08022 1.62144 1.15684 1.21235 0.86306 0.76492 0.85431 1.90529 1.16408 1.57039 1.81588 1.22574 1.01280 1.04199 0.92317 1.21165 0.86969 0.89520 0.93068 1.22622 1.01698 0.97164 1.02646 1.21804 1.01445 1.02120 0.94014 1.86398 1.58259 1.49233 1.45957 1.22214 0.99823 0.97738 0.82810 1.21532 0.81218 0.93897 0.94827 1.22454 0.99869 0.97189 0.98753 1.20305 0.94890 0.94211 0.83606 1.44276 1.70788 1.07366 1.10918 1.19574 1.22501 0.92772 1.04369 0.91555 1.25888 0.98796 0.99090 1.00893 1.70163 1.34142 1.08668 1.45240 0.85193 0.78260 0.78387 0.78552 1.18976 1.21870 1.21678 1.20895 0.96043 0.84283 0.96368 1.21888 1.00774 0.99351 0.92920 1.87991 1.20341 1.76648 1.44374 0.93737 0.88059 0.90459 0.88224 0.85842 0.84544 0.87120 0.90150 0.92447 0.92204 0.91931 0.92053 0.88270 0.76606 0.89801 0.89206 0.92731 0.93374 0.93573 0.98535 0.94223 0.96651 0.92689 0.89042 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.57 71.98 0.69 -1.92 16 2 C 0.06 1.49 3.01 30.69 0.09 1.58 16 3 H 0.04 1.28 6.29 -2.39 -0.02 1.26 16 4 C 0.08 1.39 5.78 86.35 0.50 1.89 16 5 N -0.61 -13.85 2.52 -817.43 -2.06 -15.91 16 6 C 0.51 12.06 7.17 87.66 0.63 12.69 16 7 O -0.57 -17.20 11.22 15.05 0.17 -17.03 16 8 C -0.16 -2.61 3.37 29.85 0.10 -2.50 16 9 C 0.13 2.53 1.11 -10.79 -0.01 2.52 16 10 C -0.18 -3.42 8.48 71.98 0.61 -2.81 16 11 C -0.14 -1.87 8.84 71.98 0.64 -1.23 16 12 O -0.59 -15.84 12.96 -130.89 -1.70 -17.53 16 13 C 0.10 2.62 5.29 86.34 0.46 3.07 16 14 C 0.13 4.11 0.68 -10.72 -0.01 4.10 16 15 C -0.14 -5.74 4.33 30.65 0.13 -5.60 16 16 C 0.20 9.88 5.04 86.36 0.44 10.31 16 17 N -0.61 -31.73 2.99 -699.09 -2.09 -33.82 16 18 C -0.26 -14.83 9.59 84.03 0.81 -14.02 16 19 H 0.07 3.65 7.86 -2.91 -0.02 3.63 16 20 C -0.05 -2.96 5.03 84.86 0.43 -2.53 16 21 N -0.94 -56.74 11.04 21.65 0.24 -56.50 16 22 Si 0.97 46.05 29.57 68.60 2.03 48.08 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 C 0.15 6.40 6.28 86.36 0.54 6.94 16 27 C -0.11 -3.71 5.10 30.65 0.16 -3.55 16 28 O -0.37 -12.05 8.65 -148.98 -1.29 -13.34 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.12 1.26 6.08 -2.39 -0.01 1.25 16 34 H 0.14 1.15 7.72 -2.39 -0.02 1.13 16 35 H 0.11 1.66 7.93 -2.39 -0.02 1.64 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.43 5.63 -2.39 -0.01 1.41 16 39 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.38 11.06 6.45 -74.06 -0.48 10.59 16 43 H 0.08 2.54 7.07 -2.39 -0.02 2.52 16 44 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.05 2.08 6.15 -2.39 -0.01 2.06 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 2.68 6.05 -2.39 -0.01 2.66 16 48 H 0.00 -0.19 7.83 -2.39 -0.02 -0.20 16 49 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 50 H 0.02 0.70 7.83 -2.39 -0.02 0.68 16 51 H 0.05 2.28 7.93 -2.39 -0.02 2.26 16 52 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 53 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -73.27 393.90 1.91 -71.36 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.41 Total: 25.76 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 6.19 Total: 8.94 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -3.91 Total: -106.24 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -2.82 Total: -47.90 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.27 1.91 -71.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098591916.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.079 kcal (2) G-P(sol) polarization free energy of solvation -73.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds