Wall clock time and date at job start Wed Apr 1 2020 00:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47065 * 2 1 4 4 C 1.52997 * 109.47069 * 120.00509 * 2 1 3 5 5 H 1.09008 * 109.46764 * 304.81774 * 4 2 1 6 6 O 1.42896 * 109.47710 * 64.81423 * 4 2 1 7 7 C 1.50696 * 109.47282 * 184.82196 * 4 2 1 8 8 O 1.21282 * 119.99737 * 265.20177 * 7 4 2 9 9 N 1.34776 * 120.00285 * 85.47044 * 7 4 2 10 10 C 1.47155 * 120.99082 * 5.09714 * 9 7 4 11 11 C 1.53710 * 108.15380 * 129.37601 * 10 9 7 12 12 H 1.08995 * 109.69730 * 292.57826 * 11 10 9 13 13 C 1.53007 * 109.43797 * 172.41634 * 11 10 9 14 14 O 1.42968 * 109.16010 * 52.57588 * 11 10 9 15 15 C 1.42890 * 114.19939 * 297.38029 * 14 11 10 16 16 C 1.52998 * 109.55198 * 182.23695 * 15 14 11 17 17 C 1.53193 * 109.35348 * 59.07719 * 16 15 14 18 18 N 1.46927 * 108.76858 * 54.58059 * 17 16 15 19 19 C 1.36944 * 120.64288 * 126.33832 * 18 17 16 20 20 H 1.07998 * 119.99719 * 214.78414 * 19 18 17 21 21 C 1.38811 * 120.00211 * 34.78099 * 19 18 17 22 22 N 1.31620 * 119.99735 * 5.31510 * 21 19 18 23 23 Si 1.86797 * 120.00092 * 185.31330 * 21 19 18 24 24 H 1.48503 * 109.46850 * 90.00390 * 23 21 19 25 25 H 1.48497 * 109.46916 * 209.99847 * 23 21 19 26 26 H 1.48495 * 109.47352 * 330.00059 * 23 21 19 27 27 C 1.46922 * 118.71713 * 306.31608 * 18 17 16 28 28 C 1.52988 * 109.57325 * 302.55202 * 15 14 11 29 29 C 1.47159 * 120.98858 * 185.37925 * 9 7 4 30 30 H 1.09001 * 109.46707 * 299.99943 * 1 2 3 31 31 H 1.09003 * 109.47023 * 59.99932 * 1 2 3 32 32 H 1.08995 * 109.46986 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46707 * 240.00057 * 2 1 3 34 34 H 1.09008 * 109.46892 * 175.11276 * 3 2 1 35 35 H 1.09001 * 109.47223 * 295.10615 * 3 2 1 36 36 H 1.08997 * 109.47040 * 55.11156 * 3 2 1 37 37 H 0.96705 * 113.99648 * 60.00180 * 6 4 2 38 38 H 1.08994 * 109.68088 * 249.15555 * 10 9 7 39 39 H 1.09001 * 109.68015 * 9.71534 * 10 9 7 40 40 H 1.08999 * 109.46463 * 300.37320 * 13 11 10 41 41 H 1.08996 * 109.47150 * 60.37223 * 13 11 10 42 42 H 1.09002 * 109.46809 * 180.37769 * 13 11 10 43 43 H 1.09001 * 109.49026 * 179.04102 * 16 15 14 44 44 H 1.09004 * 109.49007 * 299.11103 * 16 15 14 45 45 H 1.09001 * 109.58668 * 294.79418 * 17 16 15 46 46 H 1.09002 * 109.58562 * 174.36926 * 17 16 15 47 47 H 0.97001 * 120.00034 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58316 * 293.89187 * 27 18 17 49 49 H 1.08991 * 109.59276 * 173.46428 * 27 18 17 50 50 H 1.08994 * 109.48649 * 60.88368 * 28 15 14 51 51 H 1.08997 * 109.49212 * 180.93271 * 28 15 14 52 52 H 1.08999 * 109.68241 * 350.19280 * 29 9 7 53 53 H 1.08999 * 109.67767 * 110.73909 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6079 -0.2598 2.1371 6 8 1.6583 -2.0973 1.1940 7 6 3.5423 -0.6188 1.3104 8 8 4.2298 -1.5121 0.8629 9 7 4.1218 0.4631 1.8673 10 6 3.3126 1.5039 2.5210 11 6 3.9048 1.7659 3.9150 12 1 3.7599 0.8893 4.5464 13 6 3.2060 2.9716 4.5468 14 8 5.3027 2.0369 3.7876 15 6 6.0639 0.9506 3.2561 16 6 7.5447 1.3334 3.2178 17 6 8.0190 1.6694 4.6352 18 7 7.7107 0.5360 5.5180 19 6 8.6898 -0.0387 6.2837 20 1 8.6742 -1.1022 6.4710 21 6 9.7022 0.7456 6.8192 22 7 9.6649 2.0538 6.6795 23 14 11.1176 -0.0556 7.7380 24 1 12.2094 -0.3753 6.7835 25 1 11.6249 0.8771 8.7761 26 1 10.6436 -1.3056 8.3846 27 6 6.3316 0.0316 5.5636 28 6 5.8752 -0.2865 4.1362 29 6 5.5821 0.6417 1.8343 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1266 1.4437 0.0876 35 1 1.7501 1.9304 -0.9306 36 1 1.6070 1.9809 0.8429 37 1 2.0082 -2.5720 0.4276 38 1 3.3425 2.4183 1.9285 39 1 2.2822 1.1616 2.6170 40 1 3.3499 3.8474 3.9141 41 1 2.1403 2.7643 4.6435 42 1 3.6302 3.1619 5.5326 43 1 8.1263 0.4980 2.8281 44 1 7.6792 2.2024 2.5737 45 1 7.5030 2.5610 4.9915 46 1 9.0947 1.8453 4.6284 47 1 10.3725 2.6019 7.0534 48 1 5.6790 0.7906 5.9952 49 1 6.2933 -0.8735 6.1696 50 1 4.8226 -0.5691 4.1454 51 1 6.4693 -1.1094 3.7390 52 1 6.0558 -0.2726 1.4768 53 1 5.8357 1.4700 1.1727 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098596248.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:30 Heat of formation + Delta-G solvation = -125.716555 kcal Electronic energy + Delta-G solvation = -33131.856136 eV Core-core repulsion = 29003.442398 eV Total energy + Delta-G solvation = -4128.413738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.18523 -40.56136 -38.09474 -37.95657 -36.21233 -35.11071 -34.86832 -33.32307 -31.69911 -31.32066 -29.52439 -28.06266 -27.80974 -27.05144 -25.61542 -24.20802 -23.20992 -22.34344 -21.81738 -20.71852 -20.21987 -18.96209 -18.75848 -18.09883 -17.22089 -17.01218 -16.73857 -16.67795 -16.09261 -15.88684 -15.68948 -15.38748 -15.12668 -14.99712 -14.92137 -14.53891 -14.43338 -13.96005 -13.87473 -13.54912 -13.39564 -13.23256 -13.21820 -12.96793 -12.95659 -12.88425 -12.82202 -12.74229 -12.67921 -12.56013 -12.24295 -12.11871 -12.03970 -11.89879 -11.86176 -11.75867 -11.51862 -11.35947 -11.14959 -10.78494 -10.57187 -10.50330 -9.54058 -8.57363 -7.87442 -5.43350 1.38568 1.45235 1.45691 1.55272 1.74213 2.48357 2.69324 3.19366 3.27659 3.33068 3.57753 3.65337 3.67734 3.75764 3.77913 3.90137 3.91667 4.12305 4.16704 4.26637 4.36046 4.37315 4.41751 4.45090 4.58809 4.60837 4.65936 4.68881 4.72947 4.81776 4.84722 4.89193 4.95286 4.96024 5.02684 5.04161 5.09400 5.13644 5.18014 5.22316 5.29900 5.35829 5.37657 5.43147 5.47315 5.62693 5.81602 6.19734 6.38588 6.42404 6.51299 6.94935 7.16438 7.83649 8.39721 9.17639 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.003085 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.164377 B = 9073.050452 C = 9549.951356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C -0.163 4.163 4 C 0.100 3.900 5 H 0.137 0.863 6 O -0.551 6.551 7 C 0.488 3.512 8 O -0.580 6.580 9 N -0.602 5.602 10 C 0.078 3.922 11 C 0.057 3.943 12 H 0.052 0.948 13 C -0.137 4.137 14 O -0.374 6.374 15 C 0.129 3.871 16 C -0.119 4.119 17 C 0.193 3.807 18 N -0.609 5.609 19 C -0.270 4.270 20 H 0.058 0.942 21 C -0.043 4.043 22 N -0.931 5.931 23 Si 0.970 3.030 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.271 1.271 27 C 0.155 3.845 28 C -0.137 4.137 29 C 0.096 3.904 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.390 0.610 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.001 0.999 46 H 0.053 0.947 47 H 0.251 0.749 48 H 0.015 0.985 49 H 0.043 0.957 50 H 0.065 0.935 51 H 0.051 0.949 52 H 0.081 0.919 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.382 1.623 -14.437 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.220 4.220 4 C 0.037 3.963 5 H 0.155 0.845 6 O -0.357 6.357 7 C 0.277 3.723 8 O -0.460 6.460 9 N -0.335 5.335 10 C -0.043 4.043 11 C -0.002 4.002 12 H 0.070 0.930 13 C -0.194 4.194 14 O -0.293 6.293 15 C 0.089 3.911 16 C -0.158 4.158 17 C 0.067 3.933 18 N -0.332 5.332 19 C -0.401 4.401 20 H 0.076 0.924 21 C -0.239 4.239 22 N -0.576 5.576 23 Si 0.797 3.203 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.196 1.196 27 C 0.029 3.971 28 C -0.176 4.176 29 C -0.027 4.027 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.240 0.760 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.019 0.981 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.033 0.967 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.070 0.930 52 H 0.099 0.901 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.160 1.573 -14.004 25.423 hybrid contribution 1.648 -0.777 0.235 1.837 sum -19.512 0.796 -13.769 23.894 Atomic orbital electron populations 1.21752 0.92029 1.02575 1.03149 1.21675 0.98449 0.97207 0.95745 1.22234 1.00945 0.94679 1.04163 1.22212 0.87474 0.84368 1.02206 0.84546 1.86558 1.75196 1.21439 1.52546 1.22202 0.92934 0.80515 0.76630 1.90683 1.66131 1.39384 1.49774 1.48275 1.06996 1.22177 1.56052 1.23111 0.95954 0.92102 0.93138 1.22820 0.81783 0.99883 0.95677 0.92985 1.21726 1.00784 0.96280 1.00614 1.88055 1.18908 1.37791 1.84563 1.21457 0.91894 0.86709 0.91088 1.22035 0.92677 1.01445 0.99685 1.20379 0.98472 0.88005 0.86409 1.44194 1.03904 1.37394 1.47733 1.19431 1.04524 0.91317 1.24781 0.92394 1.26013 1.02856 0.95718 0.99279 1.70127 1.34298 1.04292 1.48916 0.85245 0.79232 0.77646 0.78142 1.20944 1.21686 1.19591 1.20804 0.86020 0.96138 0.94089 1.22317 1.00196 0.97568 0.97565 1.22214 0.80860 1.02810 0.96854 0.91212 0.91185 0.92466 0.91121 0.93306 0.90960 0.89816 0.75990 0.87855 0.86030 0.90831 0.87727 0.93396 0.91640 0.90422 0.98124 0.92907 0.93949 0.96749 0.93797 0.91650 0.92972 0.90095 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.09 71.98 0.65 -0.58 16 2 C -0.11 -1.36 2.71 -10.79 -0.03 -1.39 16 3 C -0.16 -1.70 7.33 71.98 0.53 -1.17 16 4 C 0.10 1.69 2.56 29.85 0.08 1.77 16 5 H 0.14 1.81 6.00 -2.38 -0.01 1.79 16 6 O -0.55 -11.03 12.70 -131.28 -1.67 -12.70 16 7 C 0.49 12.00 6.11 87.66 0.54 12.53 16 8 O -0.58 -19.20 15.85 14.67 0.23 -18.96 16 9 N -0.60 -13.85 1.65 -816.60 -1.34 -15.20 16 10 C 0.08 1.30 3.60 86.49 0.31 1.61 16 11 C 0.06 1.32 3.03 30.84 0.09 1.41 16 12 H 0.05 1.36 6.29 -2.39 -0.02 1.35 16 13 C -0.14 -2.46 9.57 71.98 0.69 -1.77 16 14 O -0.37 -12.25 8.65 -148.98 -1.29 -13.54 16 15 C 0.13 4.37 0.68 -10.71 -0.01 4.36 16 16 C -0.12 -4.64 5.10 30.66 0.16 -4.49 16 17 C 0.19 9.70 4.99 86.36 0.43 10.13 16 18 N -0.61 -32.18 2.98 -699.09 -2.08 -34.26 16 19 C -0.27 -15.50 9.56 84.03 0.80 -14.70 16 20 H 0.06 3.29 7.83 -2.91 -0.02 3.26 16 21 C -0.04 -2.44 5.15 84.86 0.44 -2.00 16 22 N -0.93 -56.01 11.01 21.65 0.24 -55.77 16 23 Si 0.97 45.88 29.56 68.60 2.03 47.90 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 C 0.16 6.98 6.28 86.36 0.54 7.52 16 28 C -0.14 -5.13 4.33 30.66 0.13 -5.00 16 29 C 0.10 2.71 5.30 86.34 0.46 3.17 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.61 7.82 -2.39 -0.02 0.59 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 0.71 5.39 -2.38 -0.01 0.70 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.55 6.49 -2.39 -0.02 0.53 16 37 H 0.39 6.66 8.63 -74.05 -0.64 6.02 16 38 H 0.10 1.39 6.95 -2.39 -0.02 1.37 16 39 H 0.12 1.24 4.79 -2.39 -0.01 1.23 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 45 H 0.00 0.03 7.83 -2.39 -0.02 0.02 16 46 H 0.05 2.99 6.20 -2.39 -0.01 2.97 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 48 H 0.01 0.67 7.83 -2.39 -0.02 0.65 16 49 H 0.04 1.97 7.93 -2.39 -0.02 1.96 16 50 H 0.07 2.23 6.15 -2.39 -0.01 2.21 16 51 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 52 H 0.08 2.61 7.06 -2.39 -0.02 2.59 16 53 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.87 390.14 2.20 -71.67 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.27 Total: 19.44 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 5.81 Total: 11.41 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.19 Total: -105.23 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -2.72 Total: -45.20 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.87 2.20 -71.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098596248.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.044 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds