Wall clock time and date at job start Wed Apr 1 2020 00:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47341 * 2 1 4 4 C 1.53002 * 109.47157 * 119.99855 * 2 1 3 5 5 H 1.09008 * 109.47206 * 182.38525 * 4 2 1 6 6 O 1.42901 * 109.47463 * 302.38338 * 4 2 1 7 7 C 1.50701 * 109.47342 * 62.38373 * 4 2 1 8 8 O 1.21282 * 120.00072 * 250.70260 * 7 4 2 9 9 N 1.34780 * 119.99942 * 70.69534 * 7 4 2 10 10 C 1.47155 * 120.98579 * 175.74644 * 9 7 4 11 11 C 1.53293 * 108.37286 * 230.86657 * 10 9 7 12 12 H 1.08996 * 109.51342 * 67.59041 * 11 10 9 13 13 C 1.53003 * 109.54696 * 187.70923 * 11 10 9 14 14 O 1.42968 * 109.23244 * 307.65486 * 11 10 9 15 15 C 1.42892 * 114.20652 * 62.49375 * 14 11 10 16 16 C 1.52990 * 109.56422 * 57.46714 * 15 14 11 17 17 C 1.53194 * 109.34779 * 59.04052 * 16 15 14 18 18 N 1.46934 * 108.77232 * 54.57518 * 17 16 15 19 19 C 1.36932 * 120.64217 * 126.35181 * 18 17 16 20 20 H 1.08005 * 120.00261 * 328.84416 * 19 18 17 21 21 C 1.38815 * 120.00423 * 148.85039 * 19 18 17 22 22 N 1.31611 * 120.00217 * 162.70127 * 21 19 18 23 23 Si 1.86799 * 119.99477 * 342.69751 * 21 19 18 24 24 H 1.48498 * 109.47055 * 91.46715 * 23 21 19 25 25 H 1.48508 * 109.46919 * 211.46524 * 23 21 19 26 26 H 1.48498 * 109.47539 * 331.46327 * 23 21 19 27 27 C 1.46926 * 118.71927 * 306.32980 * 18 17 16 28 28 C 1.52997 * 109.55084 * 177.77055 * 15 14 11 29 29 C 1.47157 * 120.98520 * 356.03625 * 9 7 4 30 30 H 1.09000 * 109.46822 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47363 * 299.99776 * 1 2 3 32 32 H 1.09000 * 109.46894 * 60.00285 * 1 2 3 33 33 H 1.08999 * 109.47484 * 239.99765 * 2 1 3 34 34 H 1.08994 * 109.46884 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.46748 * 300.00173 * 3 2 1 36 36 H 1.09006 * 109.46654 * 59.99436 * 3 2 1 37 37 H 0.96701 * 113.99698 * 59.99616 * 6 4 2 38 38 H 1.08995 * 109.68456 * 350.58685 * 10 9 7 39 39 H 1.08998 * 109.68111 * 111.14551 * 10 9 7 40 40 H 1.09006 * 109.47222 * 179.78106 * 13 11 10 41 41 H 1.09001 * 109.47129 * 299.77640 * 13 11 10 42 42 H 1.08999 * 109.47493 * 59.77697 * 13 11 10 43 43 H 1.08994 * 109.49153 * 179.01121 * 16 15 14 44 44 H 1.09000 * 109.48683 * 299.08211 * 16 15 14 45 45 H 1.08998 * 109.59246 * 294.79016 * 17 16 15 46 46 H 1.09002 * 109.58552 * 174.35596 * 17 16 15 47 47 H 0.97006 * 119.99929 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58388 * 293.88782 * 27 18 17 49 49 H 1.09001 * 109.58856 * 173.46369 * 27 18 17 50 50 H 1.08997 * 109.49009 * 60.91078 * 28 15 14 51 51 H 1.08997 * 109.49003 * 180.98643 * 28 15 14 52 52 H 1.09007 * 109.67344 * 248.97314 * 29 9 7 53 53 H 1.08989 * 109.67974 * 9.51237 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1292 -0.6843 1.2709 6 8 1.5185 -0.0807 2.4154 7 6 1.5865 -2.1581 1.2202 8 8 0.7355 -2.5412 1.9948 9 7 2.1265 -3.0173 0.3332 10 6 1.7683 -4.4446 0.3466 11 6 3.0618 -5.2672 0.3569 12 1 3.5775 -5.1228 1.3062 13 6 2.7272 -6.7494 0.1775 14 8 3.9036 -4.8347 -0.7146 15 6 4.3243 -3.4726 -0.6160 16 6 5.0570 -3.2574 0.7097 17 6 6.2680 -4.1932 0.7779 18 7 7.0998 -3.9778 -0.4140 19 6 8.4336 -3.6928 -0.2922 20 1 8.7926 -3.1454 0.5669 21 6 9.3244 -4.1074 -1.2727 22 7 10.5204 -3.5631 -1.3480 23 14 8.8256 -5.4379 -2.4853 24 1 8.2258 -4.8100 -3.6900 25 1 10.0235 -6.2219 -2.8802 26 1 7.8313 -6.3394 -1.8499 27 6 6.4728 -4.0745 -1.7393 28 6 5.2596 -3.1401 -1.7802 29 6 3.0965 -2.5572 -0.6732 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 0.5526 -0.0761 2.4629 38 1 1.1839 -4.6681 1.2391 39 1 1.1870 -4.6855 -0.5434 40 1 3.6480 -7.3328 0.1811 41 1 2.0854 -7.0786 0.9947 42 1 2.2099 -6.8929 -0.7711 43 1 5.3927 -2.2226 0.7759 44 1 4.3822 -3.4750 1.5376 45 1 5.9288 -5.2287 0.8044 46 1 6.8493 -3.9738 1.6735 47 1 11.1430 -3.8531 -2.0330 48 1 6.1501 -5.1004 -1.9168 49 1 7.1892 -3.7770 -2.5051 50 1 4.7289 -3.2741 -2.7228 51 1 5.5938 -2.1062 -1.6943 52 1 2.6475 -2.6070 -1.6653 53 1 3.3930 -1.5314 -0.4551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098596249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:34 Heat of formation + Delta-G solvation = -127.136320 kcal Electronic energy + Delta-G solvation = -33374.898473 eV Core-core repulsion = 29246.423170 eV Total energy + Delta-G solvation = -4128.475303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.20184 -40.64908 -38.49322 -37.88902 -36.13206 -35.09183 -34.69565 -33.56957 -32.01402 -31.60497 -29.32772 -28.71349 -28.14362 -26.58223 -25.66193 -24.64715 -23.17461 -22.55865 -21.57344 -20.79441 -20.32881 -18.99544 -18.68263 -18.03588 -17.35172 -17.23385 -17.05549 -16.49875 -16.41640 -15.96633 -15.81945 -15.54095 -15.29967 -15.23277 -14.86426 -14.61964 -14.26817 -14.11606 -13.94425 -13.70586 -13.62386 -13.39738 -13.31508 -13.23556 -13.02165 -12.97269 -12.92253 -12.73588 -12.62604 -12.56564 -12.28009 -12.17230 -12.10052 -11.91525 -11.77185 -11.64117 -11.51674 -11.49249 -11.25250 -10.90328 -10.67031 -10.50460 -9.59645 -8.85212 -8.15895 -5.51788 1.30342 1.37235 1.42638 1.52496 1.72667 2.42206 2.62320 3.11486 3.15047 3.29745 3.32851 3.54641 3.64355 3.74083 3.78088 3.80969 3.87869 4.04461 4.10545 4.17754 4.26836 4.30470 4.40264 4.44775 4.51588 4.55154 4.58552 4.61761 4.66529 4.72928 4.77841 4.81071 4.88099 4.88612 4.93934 4.97210 4.97889 5.03505 5.06610 5.12753 5.17601 5.20003 5.27809 5.31510 5.40511 5.42310 5.90188 6.13550 6.14898 6.29788 6.50471 6.93294 6.94232 7.63029 8.06144 9.04256 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.003881 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.492452 B = 7212.503388 C = 8203.818966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.142 4.142 4 C 0.096 3.904 5 H 0.126 0.874 6 O -0.547 6.547 7 C 0.493 3.507 8 O -0.571 6.571 9 N -0.604 5.604 10 C 0.088 3.912 11 C 0.069 3.931 12 H 0.052 0.948 13 C -0.137 4.137 14 O -0.373 6.373 15 C 0.118 3.882 16 C -0.147 4.147 17 C 0.154 3.846 18 N -0.616 5.616 19 C -0.248 4.248 20 H 0.049 0.951 21 C -0.028 4.028 22 N -0.958 5.958 23 Si 0.947 3.053 24 H -0.268 1.268 25 H -0.313 1.313 26 H -0.268 1.268 27 C 0.128 3.872 28 C -0.112 4.112 29 C 0.086 3.914 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.387 0.613 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.023 0.977 46 H 0.048 0.952 47 H 0.262 0.738 48 H 0.028 0.972 49 H 0.050 0.950 50 H 0.093 0.907 51 H 0.088 0.912 52 H 0.102 0.898 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.194 4.623 -0.663 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C -0.199 4.199 4 C 0.033 3.967 5 H 0.143 0.857 6 O -0.353 6.353 7 C 0.282 3.718 8 O -0.451 6.451 9 N -0.338 5.338 10 C -0.034 4.034 11 C 0.011 3.989 12 H 0.070 0.930 13 C -0.195 4.195 14 O -0.293 6.293 15 C 0.077 3.923 16 C -0.186 4.186 17 C 0.028 3.972 18 N -0.341 5.341 19 C -0.378 4.378 20 H 0.067 0.933 21 C -0.223 4.223 22 N -0.604 5.604 23 Si 0.777 3.223 24 H -0.195 1.195 25 H -0.242 1.242 26 H -0.193 1.193 27 C 0.003 3.997 28 C -0.151 4.151 29 C -0.037 4.037 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.237 0.763 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.046 0.954 49 H 0.068 0.932 50 H 0.111 0.889 51 H 0.106 0.894 52 H 0.120 0.880 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -23.848 4.408 -0.320 24.254 hybrid contribution 0.095 -0.845 -0.229 0.881 sum -23.753 3.563 -0.550 24.025 Atomic orbital electron populations 1.21855 0.94066 1.01514 1.03477 1.21872 0.97402 0.98325 0.96507 1.21761 1.01408 0.93906 1.02809 1.22056 1.00334 0.86417 0.87861 0.85671 1.86581 1.27867 1.78194 1.42696 1.21955 0.81073 0.89664 0.79061 1.90670 1.33506 1.79346 1.41584 1.48200 1.43635 1.08828 1.33100 1.22340 0.97249 0.79564 1.04258 1.22532 0.89728 0.95849 0.90823 0.92962 1.21697 1.02348 0.91638 1.03778 1.88023 1.67382 1.27221 1.46633 1.21669 0.92507 0.82431 0.95647 1.22417 0.97379 1.01270 0.97499 1.20857 0.91140 0.96123 0.89032 1.44410 1.05162 1.82990 1.01528 1.18831 0.83001 1.28143 1.07807 0.93279 1.25935 0.95005 1.00326 1.01048 1.69927 1.08984 1.44600 1.36894 0.85901 0.75856 0.80871 0.79698 1.19471 1.24205 1.19318 1.21246 0.94109 0.97349 0.86952 1.21924 0.95031 1.00656 0.97535 1.22742 0.88360 0.99486 0.93075 0.93986 0.91789 0.90265 0.88467 0.92209 0.90886 0.92254 0.76271 0.88991 0.89321 0.92549 0.89151 0.90862 0.90709 0.91532 0.95881 0.93346 0.92920 0.95400 0.93153 0.88895 0.89379 0.87950 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.62 71.98 0.62 -1.32 16 2 C -0.12 -1.63 2.40 -10.79 -0.03 -1.65 16 3 C -0.14 -1.73 9.07 71.98 0.65 -1.08 16 4 C 0.10 1.79 2.32 29.85 0.07 1.86 16 5 H 0.13 2.31 7.27 -2.38 -0.02 2.29 16 6 O -0.55 -11.51 12.40 -130.16 -1.61 -13.13 16 7 C 0.49 11.27 5.92 87.66 0.52 11.79 16 8 O -0.57 -16.73 15.79 15.78 0.25 -16.48 16 9 N -0.60 -12.45 2.52 -817.42 -2.06 -14.52 16 10 C 0.09 1.81 5.92 86.35 0.51 2.32 16 11 C 0.07 1.60 3.01 30.69 0.09 1.69 16 12 H 0.05 1.36 6.29 -2.39 -0.02 1.35 16 13 C -0.14 -2.62 9.57 71.98 0.69 -1.93 16 14 O -0.37 -10.36 8.64 -148.98 -1.29 -11.64 16 15 C 0.12 3.05 0.68 -10.71 -0.01 3.04 16 16 C -0.15 -4.36 4.33 30.66 0.13 -4.23 16 17 C 0.15 5.97 6.28 86.36 0.54 6.52 16 18 N -0.62 -28.41 2.72 -699.07 -1.90 -30.31 16 19 C -0.25 -13.94 10.02 84.04 0.84 -13.10 16 20 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 21 C -0.03 -1.63 5.26 84.86 0.45 -1.18 16 22 N -0.96 -59.77 13.97 21.65 0.30 -59.47 16 23 Si 0.95 46.69 24.34 68.60 1.67 48.36 16 24 H -0.27 -12.26 6.63 99.48 0.66 -11.60 16 25 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 26 H -0.27 -13.03 6.60 99.48 0.66 -12.38 16 27 C 0.13 5.20 3.96 86.36 0.34 5.55 16 28 C -0.11 -3.26 5.10 30.66 0.16 -3.10 16 29 C 0.09 1.59 3.96 86.34 0.34 1.93 16 30 H 0.04 0.67 7.29 -2.39 -0.02 0.65 16 31 H 0.06 0.76 6.74 -2.39 -0.02 0.75 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.12 5.85 -2.39 -0.01 1.11 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.80 7.75 -2.38 -0.02 0.78 16 37 H 0.39 6.71 6.94 -74.06 -0.51 6.19 16 38 H 0.09 2.02 7.11 -2.39 -0.02 2.00 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.07 1.87 6.15 -2.39 -0.01 1.86 16 45 H 0.02 0.91 7.83 -2.39 -0.02 0.90 16 46 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 47 H 0.26 15.53 8.31 -92.70 -0.77 14.76 16 48 H 0.03 1.18 6.66 -2.39 -0.02 1.16 16 49 H 0.05 2.25 4.74 -2.39 -0.01 2.24 16 50 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 52 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 53 H 0.11 1.72 4.87 -2.39 -0.01 1.71 16 Total: -1.00 -72.07 386.49 1.57 -70.50 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.30 Total: 19.58 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.92 Total: 7.10 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -3.66 Total: -104.29 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -2.65 Total: -41.24 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.67 Total: 48.36 kcal Total: -72.07 1.57 -70.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098596249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.635 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds