Wall clock time and date at job start Tue Mar 31 2020 22:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47156 * 2 1 4 4 O 1.42899 * 109.47281 * 120.00436 * 2 1 3 5 5 C 1.42891 * 114.00065 * 90.00074 * 4 2 1 6 6 C 1.50707 * 109.47116 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99616 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99797 * 180.27434 * 6 5 4 9 9 C 1.46503 * 119.99832 * 179.72439 * 8 6 5 10 10 H 1.09010 * 109.49730 * 34.93198 * 9 8 6 11 11 C 1.53191 * 109.50311 * 274.82831 * 9 8 6 12 12 N 1.46928 * 108.81828 * 185.39369 * 11 9 8 13 13 C 1.36936 * 120.64159 * 233.60323 * 12 11 9 14 14 H 1.07998 * 119.99990 * 152.31556 * 13 12 11 15 15 C 1.38813 * 120.00078 * 332.31820 * 13 12 11 16 16 N 1.31620 * 119.99586 * 342.59113 * 15 13 12 17 17 Si 1.86801 * 119.99911 * 162.59338 * 15 13 12 18 18 H 1.48494 * 109.47168 * 94.34829 * 17 15 13 19 19 H 1.48501 * 109.46557 * 214.35000 * 17 15 13 20 20 H 1.48499 * 109.47058 * 334.34347 * 17 15 13 21 21 C 1.46951 * 118.71569 * 53.62169 * 12 11 9 22 22 C 1.53085 * 108.75816 * 306.49833 * 21 12 11 23 23 C 1.53071 * 109.53406 * 174.72199 * 22 21 12 24 24 C 1.53113 * 109.16751 * 176.69926 * 23 22 21 25 25 O 1.42902 * 109.41493 * 302.53589 * 24 23 22 26 26 C 1.42910 * 114.12310 * 61.18173 * 25 24 23 27 27 C 1.53086 * 109.47125 * 294.44345 * 22 21 12 28 28 C 1.52949 * 109.48416 * 54.54365 * 22 21 12 29 29 H 1.09003 * 109.47303 * 60.00121 * 1 2 3 30 30 H 1.08998 * 109.47375 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47213 * 299.99677 * 1 2 3 32 32 H 1.09001 * 109.47213 * 240.00323 * 2 1 3 33 33 H 1.08998 * 109.47023 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47371 * 300.00298 * 3 2 1 35 35 H 1.09001 * 109.46796 * 60.00068 * 3 2 1 36 36 H 1.09000 * 109.47466 * 60.00361 * 5 4 2 37 37 H 1.08997 * 109.47370 * 299.99626 * 5 4 2 38 38 H 0.96997 * 120.00638 * 359.72217 * 8 6 5 39 39 H 1.09000 * 109.57878 * 305.19645 * 11 9 8 40 40 H 1.09005 * 109.57919 * 65.59190 * 11 9 8 41 41 H 0.97005 * 119.99131 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.59150 * 186.71092 * 21 12 11 43 43 H 1.09005 * 109.70486 * 66.34872 * 21 12 11 44 44 H 1.08996 * 109.52216 * 296.61227 * 23 22 21 45 45 H 1.09004 * 109.51789 * 56.79978 * 23 22 21 46 46 H 1.09004 * 109.48140 * 182.55468 * 24 23 22 47 47 H 1.09002 * 109.48022 * 62.51557 * 24 23 22 48 48 H 1.09005 * 109.48060 * 178.82096 * 26 25 24 49 49 H 1.08997 * 109.48366 * 58.77731 * 26 25 24 50 50 H 1.09000 * 109.52437 * 303.13812 * 27 22 21 51 51 H 1.08999 * 109.52343 * 63.33097 * 27 22 21 52 52 H 1.08996 * 109.46034 * 178.71794 * 28 22 21 53 53 H 1.09003 * 109.45457 * 58.74314 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 2.7015 -2.6833 2.2744 7 8 2.8753 -1.9809 3.2478 8 7 2.9615 -4.0040 2.3412 9 6 3.4547 -4.5912 3.5895 10 1 2.9994 -4.0791 4.4373 11 6 4.9777 -4.4414 3.6585 12 7 5.4699 -5.1472 4.8495 13 6 6.2570 -4.5034 5.7666 14 1 6.2529 -4.8206 6.7990 15 6 7.0602 -3.4432 5.3695 16 7 7.3367 -3.2688 4.0945 17 14 7.7485 -2.2642 6.6445 18 1 9.1106 -2.7033 7.0404 19 1 7.8169 -0.8971 6.0684 20 1 6.8649 -2.2547 7.8379 21 6 5.1014 -6.5573 5.0372 22 6 3.5783 -6.6838 4.9506 23 6 3.1831 -8.1614 5.0121 24 6 1.6561 -8.2740 5.0081 25 8 1.1226 -7.5377 6.1105 26 6 1.4195 -6.1401 6.0779 27 6 2.9369 -5.9415 6.1259 28 6 3.0899 -6.0770 3.6343 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.9320 -2.2466 0.1985 37 1 1.2538 -2.5434 0.7124 38 1 2.8221 -4.5658 1.5629 39 1 5.4281 -4.8742 2.7652 40 1 5.2381 -3.3851 3.7261 41 1 7.8983 -2.5280 3.8171 42 1 5.4414 -6.8967 6.0156 43 1 5.5634 -7.1646 4.2588 44 1 3.5892 -8.6834 4.1458 45 1 3.5787 -8.6064 5.9252 46 1 1.3686 -9.3216 5.0975 47 1 1.2641 -7.8675 4.0757 48 1 0.9614 -5.6510 6.9376 49 1 1.0249 -5.7059 5.1593 50 1 3.3267 -6.3379 7.0634 51 1 3.1676 -4.8786 6.0548 52 1 2.0080 -6.1877 3.5627 53 1 3.5638 -6.5926 2.7990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099569945.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:26 Heat of formation + Delta-G solvation = -136.667382 kcal Electronic energy + Delta-G solvation = -32181.608761 eV Core-core repulsion = 28052.720160 eV Total energy + Delta-G solvation = -4128.888601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.63300 -40.57560 -39.06810 -38.26676 -35.81622 -35.32346 -33.72739 -32.83356 -32.02763 -31.41824 -28.61248 -28.40697 -27.93990 -27.31280 -24.60681 -24.53905 -23.41833 -22.24545 -22.06538 -21.44229 -19.40599 -18.73919 -18.04790 -18.01953 -17.26127 -17.07045 -16.86571 -16.73648 -16.43748 -15.98024 -15.70673 -15.49481 -15.33941 -15.12857 -15.06461 -14.89666 -14.42871 -14.23400 -13.92125 -13.81957 -13.49267 -13.30009 -13.06983 -13.01427 -12.89069 -12.83159 -12.78551 -12.71621 -12.36715 -12.34865 -12.17036 -12.14348 -12.05161 -11.76297 -11.70972 -11.62297 -11.10126 -10.99081 -10.72076 -10.62756 -10.56395 -10.27309 -10.08424 -8.68042 -7.91251 -5.35122 1.37195 1.42588 1.49812 1.64008 1.88605 2.46200 3.00986 3.04462 3.26057 3.61156 3.69834 3.75582 3.90938 3.94124 4.04220 4.10192 4.18155 4.18574 4.21988 4.28612 4.30508 4.33353 4.36028 4.39289 4.56758 4.61375 4.74997 4.77082 4.80976 4.82952 4.87586 4.91484 4.92568 4.93056 4.95364 5.00107 5.13320 5.21188 5.27801 5.28711 5.33730 5.34726 5.43208 5.50809 5.55319 5.59950 5.77351 6.20213 6.33548 6.35014 6.66665 7.10743 7.36146 7.83933 8.32227 9.13244 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007827 B = 0.004348 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3576.526549 B = 6437.790147 C = 9149.528473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.069 3.931 3 C -0.152 4.152 4 O -0.398 6.398 5 C 0.053 3.947 6 C 0.500 3.500 7 O -0.579 6.579 8 N -0.706 5.706 9 C 0.133 3.867 10 H 0.056 0.944 11 C 0.179 3.821 12 N -0.600 5.600 13 C -0.258 4.258 14 H 0.064 0.936 15 C -0.046 4.046 16 N -0.928 5.928 17 Si 0.954 3.046 18 H -0.278 1.278 19 H -0.299 1.299 20 H -0.273 1.273 21 C 0.154 3.846 22 C -0.063 4.063 23 C -0.134 4.134 24 C 0.059 3.941 25 O -0.398 6.398 26 C 0.069 3.931 27 C -0.133 4.133 28 C -0.098 4.098 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.416 0.584 39 H 0.001 0.999 40 H 0.041 0.959 41 H 0.246 0.754 42 H 0.048 0.952 43 H 0.023 0.977 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.113 0.887 47 H 0.063 0.937 48 H 0.092 0.908 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.051 0.949 52 H 0.084 0.916 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.747 -5.492 -11.691 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 C -0.209 4.209 4 O -0.318 6.318 5 C -0.027 4.027 6 C 0.287 3.713 7 O -0.457 6.457 8 N -0.360 5.360 9 C 0.027 3.973 10 H 0.074 0.926 11 C 0.052 3.948 12 N -0.323 5.323 13 C -0.388 4.388 14 H 0.082 0.918 15 C -0.242 4.242 16 N -0.574 5.574 17 Si 0.782 3.218 18 H -0.204 1.204 19 H -0.226 1.226 20 H -0.197 1.197 21 C 0.029 3.971 22 C -0.066 4.066 23 C -0.173 4.173 24 C -0.018 4.018 25 O -0.317 6.317 26 C -0.008 4.008 27 C -0.171 4.171 28 C -0.136 4.136 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.253 0.747 39 H 0.019 0.981 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.131 0.869 47 H 0.081 0.919 48 H 0.111 0.889 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.103 0.897 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.585 -4.859 -10.735 20.345 hybrid contribution 1.291 0.975 0.148 1.625 sum -15.293 -3.884 -10.587 19.001 Atomic orbital electron populations 1.22282 0.94594 1.02946 1.02994 1.22448 0.94779 0.93964 0.87554 1.21910 1.01276 0.94589 1.03114 1.88065 1.87173 1.19058 1.37491 1.22324 1.03166 0.83388 0.93777 1.21134 0.77194 0.82502 0.90493 1.90743 1.53196 1.61630 1.40163 1.45751 1.66682 1.08025 1.15517 1.21515 0.95438 0.94494 0.85864 0.92596 1.20786 0.89550 0.96878 0.87563 1.44085 1.56746 1.07034 1.24396 1.19395 1.16657 1.12941 0.89833 0.91798 1.25669 0.98445 1.02661 0.97403 1.70153 1.40008 1.31434 1.15812 0.85459 0.78530 0.78510 0.79254 1.20409 1.22614 1.19744 1.21112 0.92706 0.84689 0.98604 1.20870 0.95796 0.95700 0.94205 1.22128 0.97399 0.94124 1.03606 1.22788 0.92102 0.97418 0.89451 1.87873 1.76035 1.19842 1.47979 1.22536 0.94001 0.82199 1.02046 1.22055 0.96239 1.00547 0.98279 1.21751 1.01546 0.92358 0.97927 0.89264 0.91749 0.93282 0.89757 0.93189 0.88329 0.93194 0.87940 0.86716 0.74703 0.98095 0.94075 0.94488 0.93378 0.95890 0.89009 0.91407 0.86934 0.91853 0.88936 0.92787 0.92628 0.92989 0.89743 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 9.53 71.98 0.69 -1.95 16 2 C 0.07 1.36 3.34 30.59 0.10 1.46 16 3 C -0.15 -2.92 9.56 71.98 0.69 -2.23 16 4 O -0.40 -11.86 9.52 -129.94 -1.24 -13.10 16 5 C 0.05 1.27 6.23 71.24 0.44 1.71 16 6 C 0.50 17.66 7.87 87.66 0.69 18.35 16 7 O -0.58 -28.42 16.16 16.00 0.26 -28.16 16 8 N -0.71 -21.34 5.08 -442.11 -2.25 -23.59 16 9 C 0.13 4.98 2.27 45.07 0.10 5.09 16 10 H 0.06 2.49 5.71 -2.38 -0.01 2.48 16 11 C 0.18 8.84 4.88 86.36 0.42 9.26 16 12 N -0.60 -30.25 2.50 -699.23 -1.75 -31.99 16 13 C -0.26 -14.74 9.59 84.03 0.81 -13.93 16 14 H 0.06 3.59 7.89 -2.91 -0.02 3.56 16 15 C -0.05 -2.72 4.91 84.86 0.42 -2.31 16 16 N -0.93 -57.80 11.19 21.65 0.24 -57.55 16 17 Si 0.95 48.36 29.59 68.60 2.03 50.39 16 18 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 19 H -0.30 -15.56 7.11 99.48 0.71 -14.86 16 20 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 21 C 0.15 6.14 5.20 86.32 0.45 6.59 16 22 C -0.06 -1.94 0.51 -52.12 -0.03 -1.97 16 23 C -0.13 -3.07 4.92 30.66 0.15 -2.92 16 24 C 0.06 1.17 6.57 72.02 0.47 1.64 16 25 O -0.40 -10.41 10.76 -148.98 -1.60 -12.02 16 26 C 0.07 1.89 6.57 72.02 0.47 2.36 16 27 C -0.13 -4.45 4.47 30.66 0.14 -4.32 16 28 C -0.10 -2.74 3.64 30.60 0.11 -2.63 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.88 7.87 -2.39 -0.02 0.86 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.22 7.79 -2.39 -0.02 1.20 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.93 8.08 -2.39 -0.02 1.91 16 37 H 0.12 1.78 7.87 -2.39 -0.02 1.76 16 38 H 0.42 8.43 8.60 -92.71 -0.80 7.63 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.04 2.49 6.04 -2.38 -0.01 2.47 16 41 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 42 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 43 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.06 1.09 6.59 -2.39 -0.02 1.08 16 48 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 49 H 0.05 1.41 6.64 -2.39 -0.02 1.39 16 50 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.05 2.14 5.91 -2.39 -0.01 2.12 16 52 H 0.08 1.93 5.03 -2.39 -0.01 1.92 16 53 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -82.03 402.31 1.92 -80.11 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.10 Total: 21.70 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.12 Total: 14.20 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.75 Total: -113.14 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -2.58 Total: -53.27 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -82.03 1.92 -80.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099569945.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.552 kcal (2) G-P(sol) polarization free energy of solvation -82.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds