Wall clock time and date at job start Wed Apr 1 2020 00:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 110.77688 * 2 1 4 4 C 1.54319 * 110.72171 * 236.75723 * 2 1 3 5 5 N 1.47022 * 107.26928 * 219.44589 * 4 2 1 6 6 C 1.36933 * 125.64936 * 178.89483 * 5 4 2 7 7 H 1.08003 * 120.00355 * 180.02562 * 6 5 4 8 8 C 1.38819 * 119.99783 * 0.02562 * 6 5 4 9 9 N 1.31612 * 119.99960 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99681 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47609 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.46933 * 120.00346 * 10 8 6 13 13 H 1.48507 * 109.46876 * 239.99875 * 10 8 6 14 14 C 1.47424 * 108.70440 * 358.93848 * 5 4 2 15 15 C 1.54907 * 104.83157 * 24.12999 * 14 5 4 16 16 H 1.08998 * 111.03752 * 81.08094 * 15 14 5 17 17 C 1.52997 * 111.00593 * 204.91241 * 15 14 5 18 18 N 1.46499 * 109.47555 * 287.20002 * 17 15 14 19 19 C 1.34777 * 120.00199 * 180.02562 * 18 17 15 20 20 O 1.21283 * 119.99750 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99928 * 180.27479 * 19 18 17 22 22 C 1.52996 * 109.47159 * 179.72352 * 21 19 18 23 23 O 1.42898 * 109.47180 * 179.97438 * 22 21 19 24 24 C 1.42904 * 113.99948 * 179.97438 * 23 22 21 25 25 C 1.52998 * 109.47095 * 180.02562 * 24 23 22 26 26 H 1.09003 * 110.33018 * 305.69625 * 25 24 23 27 27 C 1.54476 * 110.37186 * 183.45055 * 25 24 23 28 28 C 1.54510 * 104.06291 * 217.18769 * 27 25 24 29 29 C 1.54480 * 104.06284 * 359.97438 * 28 27 25 30 30 O 1.44423 * 110.37364 * 67.95027 * 25 24 23 31 31 H 1.08996 * 109.47347 * 296.76381 * 1 2 3 32 32 H 1.08999 * 109.46557 * 56.76699 * 1 2 3 33 33 H 1.09000 * 109.46816 * 176.76325 * 1 2 3 34 34 H 1.09005 * 109.88201 * 338.85704 * 4 2 1 35 35 H 1.09000 * 109.88316 * 99.87596 * 4 2 1 36 36 H 0.97003 * 119.99755 * 179.97438 * 9 8 6 37 37 H 1.09003 * 110.36712 * 265.29056 * 14 5 4 38 38 H 1.09005 * 110.36650 * 142.96924 * 14 5 4 39 39 H 1.08998 * 109.47382 * 167.19563 * 17 15 14 40 40 H 1.09002 * 109.47216 * 47.20000 * 17 15 14 41 41 H 0.97000 * 119.99484 * 359.97438 * 18 17 15 42 42 H 1.09004 * 109.46965 * 299.72211 * 21 19 18 43 43 H 1.08994 * 109.46990 * 59.72065 * 21 19 18 44 44 H 1.09004 * 109.47066 * 299.99797 * 22 21 19 45 45 H 1.09000 * 109.47234 * 59.99288 * 22 21 19 46 46 H 1.09007 * 109.47093 * 300.00015 * 24 23 22 47 47 H 1.08994 * 109.46971 * 59.99650 * 24 23 22 48 48 H 1.09003 * 110.51199 * 335.83109 * 27 25 24 49 49 H 1.08996 * 110.51102 * 98.54274 * 27 25 24 50 50 H 1.08998 * 110.50987 * 118.64329 * 28 27 25 51 51 H 1.08997 * 110.51118 * 241.21761 * 28 27 25 52 52 H 1.08997 * 110.37165 * 142.80791 * 29 28 27 53 53 H 1.08997 * 110.37455 * 265.15052 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0761 -0.7912 -1.2072 5 7 3.2446 -1.5507 -0.7388 6 6 4.0034 -2.3982 -1.5010 7 1 4.8455 -2.9122 -1.0614 8 6 3.6904 -2.5967 -2.8388 9 7 2.6640 -1.9707 -3.3744 10 14 4.7261 -3.7523 -3.8788 11 1 5.8136 -4.3269 -3.0467 12 1 3.8711 -4.8478 -4.4021 13 1 5.3174 -3.0002 -5.0146 14 6 3.4633 -1.2497 0.6877 15 6 2.0790 -0.7953 1.2139 16 1 1.4448 -1.6530 1.4381 17 6 2.2277 0.1082 2.4396 18 7 2.6327 -0.6977 3.5941 19 6 2.8248 -0.1104 4.7919 20 8 2.6627 1.0854 4.9138 21 6 3.2475 -0.9384 5.9780 22 6 3.4009 -0.0341 7.2025 23 8 3.8012 -0.8193 8.3274 24 6 3.9741 -0.0666 9.5297 25 6 4.4010 -1.0038 10.6612 26 1 3.6921 -1.8260 10.7596 27 6 4.5104 -0.2260 11.9913 28 6 5.7305 -0.8589 12.6971 29 6 6.2135 -1.9447 11.7102 30 8 5.7306 -1.5126 10.4181 31 1 -0.3634 0.4627 0.9175 32 1 -0.3632 0.5632 -0.8596 33 1 -0.3633 -1.0260 -0.0580 34 1 1.3130 -1.4760 -1.5774 35 1 2.3717 -0.1026 -1.9987 36 1 2.4456 -2.1092 -4.3093 37 1 4.1932 -0.4477 0.7986 38 1 3.7960 -2.1425 1.2172 39 1 1.2748 0.5931 2.6514 40 1 2.9853 0.8666 2.2422 41 1 2.7620 -1.6541 3.4966 42 1 2.4914 -1.6973 6.1792 43 1 4.1998 -1.4226 5.7622 44 1 4.1570 0.7248 7.0013 45 1 2.4486 0.4502 7.4183 46 1 4.7427 0.6911 9.3766 47 1 3.0340 0.4176 9.7936 48 1 4.6859 0.8329 11.8013 49 1 3.6095 -0.3634 12.5893 50 1 6.5092 -0.1129 12.8559 51 1 5.4332 -1.3071 13.6452 52 1 7.3021 -1.9996 11.7095 53 1 5.7840 -2.9121 11.9703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102116147.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:32 Heat of formation + Delta-G solvation = -143.078522 kcal Electronic energy + Delta-G solvation = -29081.080745 eV Core-core repulsion = 24951.914136 eV Total energy + Delta-G solvation = -4129.166609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.94560 -40.43802 -39.60553 -38.55935 -36.04771 -34.66872 -33.34055 -32.93174 -32.53735 -31.32428 -30.43451 -27.85880 -26.83537 -26.22346 -24.93744 -23.83655 -22.91881 -21.97134 -21.64609 -21.55454 -20.59259 -18.89492 -18.41303 -17.75116 -17.37274 -17.24392 -16.99083 -16.60749 -16.55525 -16.48790 -15.97746 -15.66936 -15.55530 -14.90274 -14.76320 -14.63010 -14.52785 -14.32706 -14.15188 -13.83663 -13.44614 -13.22512 -13.13434 -13.09951 -12.85490 -12.69088 -12.67308 -12.44815 -12.39872 -12.20732 -12.18391 -12.08067 -11.90140 -11.84033 -11.56170 -11.48781 -11.41778 -11.35806 -10.88380 -10.73724 -10.70646 -10.64378 -10.06122 -8.88567 -7.84380 -5.19712 1.45849 1.46622 1.56915 1.62045 1.99061 2.49485 2.77422 2.94919 3.33753 3.62221 3.66419 3.71875 3.80583 3.86120 3.95248 3.96516 3.99901 4.05740 4.13531 4.18211 4.35162 4.39741 4.41727 4.50130 4.51399 4.54609 4.56499 4.61563 4.75132 4.78552 4.83145 4.84102 4.85466 4.87986 4.91363 4.96383 4.98410 5.09692 5.10036 5.16895 5.17185 5.35469 5.40118 5.48317 5.50803 5.72572 5.82783 5.90083 6.16521 6.21084 6.54865 7.11424 7.22429 7.79092 8.43555 9.25983 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.001610 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.674207 B =17391.292932 C =18789.098198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.265 1.265 12 H -0.291 1.291 13 H -0.295 1.295 14 C 0.136 3.864 15 C -0.090 4.090 16 H 0.091 0.909 17 C 0.144 3.856 18 N -0.716 5.716 19 C 0.518 3.482 20 O -0.586 6.586 21 C -0.132 4.132 22 C 0.081 3.919 23 O -0.399 6.399 24 C 0.064 3.936 25 C 0.071 3.929 26 H 0.077 0.923 27 C -0.145 4.145 28 C -0.151 4.151 29 C 0.032 3.968 30 O -0.398 6.398 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.016 0.984 35 H -0.002 1.002 36 H 0.246 0.754 37 H 0.016 0.984 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.415 0.585 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.079 0.921 51 H 0.096 0.904 52 H 0.096 0.904 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 2.476 33.027 33.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.091 0.909 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.101 0.899 8 C -0.260 4.260 9 N -0.600 5.600 10 Si 0.806 3.194 11 H -0.189 1.189 12 H -0.218 1.218 13 H -0.222 1.222 14 C 0.011 3.989 15 C -0.109 4.109 16 H 0.109 0.891 17 C 0.020 3.980 18 N -0.367 5.367 19 C 0.306 3.694 20 O -0.467 6.467 21 C -0.171 4.171 22 C 0.004 3.996 23 O -0.319 6.319 24 C -0.013 4.013 25 C 0.013 3.987 26 H 0.095 0.905 27 C -0.183 4.183 28 C -0.189 4.189 29 C -0.044 4.044 30 O -0.318 6.318 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.016 0.984 36 H 0.055 0.945 37 H 0.034 0.966 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.252 0.748 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.118 0.882 50 H 0.098 0.902 51 H 0.114 0.886 52 H 0.115 0.885 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.332 3.027 32.688 32.829 hybrid contribution 0.574 -0.635 -1.287 1.546 sum 0.242 2.392 31.400 31.492 Atomic orbital electron populations 1.21636 0.92937 1.01686 1.02175 1.22322 0.97016 0.98540 0.94323 0.90855 1.20973 0.88118 0.91930 0.92277 1.44797 1.32674 1.51141 1.06901 1.19515 1.07885 1.17625 0.91988 0.89907 1.25648 0.99858 1.02293 0.98247 1.70198 1.30380 1.47074 1.12351 0.85024 0.77992 0.77938 0.78470 1.18932 1.21838 1.22192 1.21779 0.95132 0.97535 0.84417 1.22471 0.96966 0.98359 0.93148 0.89089 1.21145 1.00343 0.93049 0.83447 1.45960 1.69263 1.12882 1.08619 1.20780 0.76078 0.87889 0.84663 1.90692 1.53463 1.17096 1.85457 1.21426 1.05917 0.99145 0.90650 1.22051 0.99492 0.92825 0.85200 1.87826 1.89658 1.35914 1.18518 1.22738 1.00845 0.93759 0.83925 1.23152 0.85481 0.96131 0.93892 0.90503 1.22942 1.00181 1.00746 0.94423 1.22942 0.97885 0.98529 0.99514 1.23643 1.00764 0.97661 0.82326 1.89234 1.30291 1.82091 1.30152 0.90546 0.92810 0.93247 0.96533 0.98379 0.94499 0.96605 0.93245 0.90649 0.92564 0.74844 0.85822 0.86773 0.93600 0.92406 0.92827 0.89841 0.89985 0.88228 0.90207 0.88582 0.88529 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.16 71.98 0.66 -3.06 16 2 C -0.10 -3.62 3.02 -9.60 -0.03 -3.64 16 3 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 4 C 0.19 9.45 4.97 86.73 0.43 9.88 16 5 N -0.63 -32.14 3.39 -691.98 -2.35 -34.49 16 6 C -0.24 -13.54 10.28 84.04 0.86 -12.68 16 7 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 8 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 9 N -0.95 -57.70 10.31 21.65 0.22 -57.47 16 10 Si 0.98 46.08 29.55 68.60 2.03 48.10 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 C 0.14 5.31 6.65 86.85 0.58 5.89 16 15 C -0.09 -2.78 2.50 -9.40 -0.02 -2.80 16 16 H 0.09 2.68 8.05 -2.39 -0.02 2.67 16 17 C 0.14 3.80 5.13 86.38 0.44 4.24 16 18 N -0.72 -15.88 5.50 -463.06 -2.55 -18.42 16 19 C 0.52 12.31 7.83 87.66 0.69 13.00 16 20 O -0.59 -18.49 15.98 -3.04 -0.05 -18.53 16 21 C -0.13 -2.33 6.07 29.85 0.18 -2.15 16 22 C 0.08 1.62 5.23 71.98 0.38 2.00 16 23 O -0.40 -8.33 10.34 -148.60 -1.54 -9.87 16 24 C 0.06 1.02 5.54 71.98 0.40 1.42 16 25 C 0.07 1.04 3.57 31.10 0.11 1.15 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 C -0.15 -1.22 6.63 31.61 0.21 -1.01 16 28 C -0.15 -1.14 7.09 31.61 0.22 -0.92 16 29 C 0.03 0.39 7.63 72.49 0.55 0.94 16 30 O -0.40 -7.89 11.35 -148.60 -1.69 -9.57 16 31 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.50 8.06 -2.39 -0.02 1.48 16 34 H 0.02 0.91 7.00 -2.38 -0.02 0.89 16 35 H 0.00 -0.12 7.51 -2.39 -0.02 -0.13 16 36 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.02 0.64 7.91 -2.39 -0.02 0.62 16 38 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 40 H 0.06 1.66 7.96 -2.39 -0.02 1.64 16 41 H 0.41 7.41 8.47 -92.71 -0.79 6.62 16 42 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 45 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 46 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 47 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 0.64 7.87 -2.39 -0.02 0.62 16 49 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 52 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 53 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -75.50 421.65 0.29 -75.21 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.08 Total: 16.21 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 6.13 Total: 8.84 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.67 Total: -110.39 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -3.27 Total: -37.98 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -75.50 0.29 -75.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102116147.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.867 kcal (2) G-P(sol) polarization free energy of solvation -75.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds