Wall clock time and date at job start Wed Apr 1 2020 00:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09012 * 110.91207 * 2 1 4 4 C 1.54905 * 111.00726 * 236.09974 * 2 1 3 5 5 N 1.47424 * 104.83063 * 204.91651 * 4 2 1 6 6 C 1.36943 * 125.64605 * 204.16154 * 5 4 2 7 7 H 1.07997 * 119.99919 * 179.97438 * 6 5 4 8 8 C 1.38817 * 119.99704 * 359.95957 * 6 5 4 9 9 N 1.31615 * 120.00306 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99549 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47310 * 59.99763 * 10 8 6 12 12 H 1.48497 * 109.46691 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46860 * 299.99803 * 10 8 6 14 14 C 1.47013 * 108.70827 * 24.12393 * 5 4 2 15 15 C 1.54330 * 107.26811 * 358.94453 * 14 5 4 16 16 H 1.08999 * 110.72206 * 96.34709 * 15 14 5 17 17 C 1.53003 * 110.71917 * 219.44082 * 15 14 5 18 18 N 1.46498 * 109.47332 * 293.54522 * 17 15 14 19 19 C 1.34773 * 120.00041 * 179.97438 * 18 17 15 20 20 O 1.21283 * 120.00278 * 0.02562 * 19 18 17 21 21 C 1.50705 * 120.00022 * 179.97438 * 19 18 17 22 22 C 1.52993 * 109.47238 * 180.02562 * 21 19 18 23 23 O 1.42902 * 109.47193 * 180.02562 * 22 21 19 24 24 C 1.42896 * 114.00139 * 179.97438 * 23 22 21 25 25 C 1.52997 * 109.47509 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.82297 * 54.42989 * 25 24 23 27 27 C 1.54377 * 109.91173 * 175.36949 * 25 24 23 28 28 C 1.55300 * 102.25502 * 140.91245 * 27 25 24 29 29 C 1.54940 * 100.94415 * 325.86750 * 28 27 25 30 30 O 1.43245 * 109.83152 * 293.54853 * 25 24 23 31 31 H 1.08998 * 109.47754 * 296.10060 * 1 2 3 32 32 H 1.09006 * 109.47275 * 56.10062 * 1 2 3 33 33 H 1.09004 * 109.46997 * 176.09988 * 1 2 3 34 34 H 1.08998 * 110.36719 * 86.07505 * 4 2 1 35 35 H 1.09000 * 110.36676 * 323.75251 * 4 2 1 36 36 H 0.97001 * 120.00149 * 179.97438 * 9 8 6 37 37 H 1.08991 * 109.88684 * 239.52893 * 14 5 4 38 38 H 1.09003 * 110.01380 * 118.42619 * 14 5 4 39 39 H 1.08994 * 109.47128 * 173.54248 * 17 15 14 40 40 H 1.09008 * 109.46719 * 53.54460 * 17 15 14 41 41 H 0.97002 * 119.99926 * 359.97438 * 18 17 15 42 42 H 1.08998 * 109.46842 * 59.99955 * 21 19 18 43 43 H 1.08999 * 109.46940 * 300.00677 * 21 19 18 44 44 H 1.09002 * 109.47343 * 60.00445 * 22 21 19 45 45 H 1.08999 * 109.47380 * 300.00006 * 22 21 19 46 46 H 1.09009 * 109.47150 * 59.99649 * 24 23 22 47 47 H 1.08996 * 109.47412 * 300.00080 * 24 23 22 48 48 H 1.09006 * 110.84785 * 259.10976 * 27 25 24 49 49 H 1.09004 * 110.84470 * 22.51696 * 27 25 24 50 50 H 1.09007 * 111.12449 * 83.79023 * 28 27 25 51 51 H 1.09003 * 111.12579 * 207.90506 * 28 27 25 52 52 H 1.08997 * 110.31031 * 277.52940 * 29 28 27 53 53 H 1.08999 * 110.30948 * 155.35829 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2429 -0.7732 6 6 4.4645 -1.5652 -1.6071 7 1 5.4131 -1.8748 -1.1940 8 6 4.2965 -1.4944 -2.9832 9 7 3.1402 -1.1179 -3.4866 10 14 5.7114 -1.9347 -4.1207 11 1 6.1196 -3.3423 -3.8810 12 1 5.2783 -1.7790 -5.5325 13 1 6.8609 -1.0335 -3.8526 14 6 3.4675 -1.2740 0.6960 15 6 2.0861 -0.8078 1.2022 16 1 1.4478 -1.6631 1.4240 17 6 2.2349 0.0877 2.4339 18 7 2.7614 -0.7010 3.5505 19 6 2.9761 -0.1169 4.7459 20 8 2.7330 1.0616 4.8975 21 6 3.5172 -0.9284 5.8948 22 6 3.6661 -0.0329 7.1263 23 8 4.1797 -0.8023 8.2154 24 6 4.3580 -0.0561 9.4210 25 6 4.9084 -0.9754 10.5132 26 1 5.8166 -1.4648 10.1613 27 6 5.2143 -0.1560 11.7852 28 6 4.7564 -1.1180 12.9151 29 6 3.5505 -1.8155 12.2368 30 8 3.9280 -1.9610 10.8586 31 1 -0.3634 0.4521 0.9228 32 1 -0.3634 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1719 -2.0836 35 1 1.4519 -1.6703 -1.4024 36 1 3.0229 -1.0681 -4.4482 37 1 4.2425 -0.5996 1.0600 38 1 3.6662 -2.2882 1.0424 39 1 1.2618 0.4970 2.7051 40 1 2.9223 0.9033 2.2091 41 1 2.9555 -1.6437 3.4294 42 1 4.4900 -1.3385 5.6235 43 1 2.8293 -1.7435 6.1196 44 1 2.6930 0.3767 7.3974 45 1 4.3537 0.7824 6.9017 46 1 3.3994 0.3532 9.7401 47 1 5.0599 0.7586 9.2436 48 1 6.2809 0.0549 11.8637 49 1 4.6360 0.7679 11.7999 50 1 5.5387 -1.8364 13.1605 51 1 4.4436 -0.5639 13.8002 52 1 2.6582 -1.1952 12.3212 53 1 3.3767 -2.7929 12.6867 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102116148.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:40 Heat of formation + Delta-G solvation = -141.629109 kcal Electronic energy + Delta-G solvation = -29138.885964 eV Core-core repulsion = 25009.782207 eV Total energy + Delta-G solvation = -4129.103758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.97626 -40.51565 -39.59892 -38.53281 -36.06818 -34.67067 -33.34940 -32.96245 -32.55282 -31.31811 -30.41907 -27.87389 -26.84642 -26.29437 -24.96145 -23.87378 -22.61916 -22.15495 -21.71491 -21.38435 -20.63420 -18.90131 -18.41631 -18.06889 -17.40369 -17.19317 -16.95928 -16.92962 -16.57033 -16.27784 -15.86723 -15.74125 -15.55744 -14.86607 -14.71640 -14.56353 -14.51401 -14.22459 -14.00084 -13.70509 -13.54759 -13.48233 -13.37170 -12.97846 -12.76951 -12.66870 -12.64917 -12.46312 -12.40049 -12.30785 -12.19070 -12.05185 -11.99589 -11.83075 -11.70760 -11.61426 -11.40505 -11.27663 -10.87077 -10.72389 -10.64636 -10.47859 -10.08741 -8.86896 -7.76451 -5.20772 1.46275 1.49217 1.55648 1.60104 1.97885 2.49787 2.73055 2.97037 3.32482 3.56307 3.62736 3.73857 3.79276 3.85210 3.91299 3.95591 3.98906 4.04064 4.16696 4.18256 4.30803 4.39244 4.39723 4.47290 4.49704 4.53547 4.63199 4.63641 4.76022 4.79526 4.81166 4.82145 4.83758 4.87726 4.90915 4.95451 4.98952 5.04394 5.10532 5.18063 5.25342 5.36421 5.40563 5.44026 5.51472 5.73063 5.85383 6.04128 6.22479 6.32676 6.52946 7.12028 7.20538 7.80086 8.43671 9.24752 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.001583 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.173305 B =17684.216495 C =18628.874748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.065 0.935 4 C 0.163 3.837 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.079 0.921 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.278 1.278 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.096 0.904 17 C 0.145 3.855 18 N -0.715 5.715 19 C 0.518 3.482 20 O -0.587 6.587 21 C -0.131 4.131 22 C 0.081 3.919 23 O -0.398 6.398 24 C 0.049 3.951 25 C 0.077 3.923 26 H 0.083 0.917 27 C -0.144 4.144 28 C -0.149 4.149 29 C 0.036 3.964 30 O -0.401 6.401 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.068 0.932 35 H -0.010 1.010 36 H 0.247 0.753 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.415 0.585 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.103 0.897 52 H 0.062 0.938 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 1.025 32.362 32.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.083 0.917 4 C 0.038 3.962 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.097 0.903 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.012 3.988 15 C -0.109 4.109 16 H 0.114 0.886 17 C 0.020 3.980 18 N -0.367 5.367 19 C 0.305 3.695 20 O -0.468 6.468 21 C -0.171 4.171 22 C 0.004 3.996 23 O -0.317 6.317 24 C -0.028 4.028 25 C 0.019 3.981 26 H 0.101 0.899 27 C -0.182 4.182 28 C -0.187 4.187 29 C -0.040 4.040 30 O -0.321 6.321 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.008 0.992 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.252 0.748 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.120 0.880 49 H 0.106 0.894 50 H 0.102 0.898 51 H 0.121 0.879 52 H 0.081 0.919 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.331 1.484 32.090 32.126 hybrid contribution 0.748 -0.252 -1.178 1.418 sum 0.417 1.231 30.912 30.939 Atomic orbital electron populations 1.21602 0.92778 1.01949 1.02154 1.22443 0.96747 0.98344 0.94643 0.91670 1.21751 0.83725 0.94887 0.95856 1.44793 1.10451 1.79052 1.01134 1.19422 0.91988 1.37534 0.88099 0.90274 1.25622 0.99710 1.02491 0.98114 1.70052 1.24071 1.54793 1.10785 0.85145 0.78441 0.78146 0.77546 1.20402 1.21909 1.20466 1.21500 0.95617 0.97679 0.84004 1.22337 0.96478 0.98589 0.93479 0.88625 1.21182 0.99082 0.93314 0.84379 1.45955 1.65760 1.14648 1.10347 1.20807 0.76951 0.87487 0.84225 1.90691 1.53843 1.18110 1.84127 1.21423 1.05176 0.99348 0.91138 1.22039 0.98383 0.93166 0.85986 1.87835 1.85846 1.37763 1.20282 1.23106 1.00638 0.94493 0.84549 1.22896 0.91544 0.89270 0.94366 0.89892 1.23132 1.04217 0.98991 0.91852 1.23268 0.97835 0.98757 0.98820 1.23622 0.97657 1.01774 0.80979 1.88514 1.60156 1.54968 1.28458 0.90807 0.92756 0.92685 0.91438 0.99164 0.94377 0.96196 0.95258 0.90628 0.93081 0.74830 0.86387 0.86169 0.93256 0.93036 0.92918 0.90726 0.87984 0.89365 0.89803 0.87855 0.91935 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.31 71.98 0.67 -3.01 16 2 C -0.10 -3.67 3.09 -9.41 -0.03 -3.70 16 3 H 0.06 2.44 8.05 -2.38 -0.02 2.42 16 4 C 0.16 7.95 5.36 86.85 0.47 8.42 16 5 N -0.63 -32.29 3.39 -692.01 -2.35 -34.64 16 6 C -0.24 -13.62 10.27 84.03 0.86 -12.76 16 7 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 8 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 9 N -0.95 -56.70 10.09 21.65 0.22 -56.48 16 10 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.14 5.42 6.52 86.73 0.57 5.98 16 15 C -0.09 -2.81 2.48 -9.60 -0.02 -2.83 16 16 H 0.10 2.70 8.04 -2.39 -0.02 2.68 16 17 C 0.14 3.98 4.99 86.38 0.43 4.41 16 18 N -0.72 -16.60 5.40 -463.05 -2.50 -19.10 16 19 C 0.52 12.83 7.83 87.66 0.69 13.52 16 20 O -0.59 -19.18 15.98 -3.04 -0.05 -19.23 16 21 C -0.13 -2.43 6.07 29.85 0.18 -2.25 16 22 C 0.08 1.69 5.23 71.98 0.38 2.07 16 23 O -0.40 -8.60 10.33 -146.53 -1.51 -10.11 16 24 C 0.05 0.80 5.48 71.98 0.39 1.20 16 25 C 0.08 1.14 3.81 31.06 0.12 1.26 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 C -0.14 -1.13 6.55 31.85 0.21 -0.92 16 28 C -0.15 -1.02 7.15 32.05 0.23 -0.79 16 29 C 0.04 0.42 7.78 72.65 0.56 0.98 16 30 O -0.40 -7.80 11.00 -146.53 -1.61 -9.41 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.05 1.57 8.07 -2.38 -0.02 1.55 16 34 H 0.07 3.83 5.87 -2.39 -0.01 3.81 16 35 H -0.01 -0.50 7.98 -2.39 -0.02 -0.52 16 36 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.02 0.81 7.76 -2.39 -0.02 0.79 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.62 8.06 -2.38 -0.02 1.60 16 41 H 0.42 7.73 8.33 -92.71 -0.77 6.96 16 42 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 45 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 46 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 49 H 0.09 0.56 7.85 -2.39 -0.02 0.54 16 50 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 51 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 52 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -74.49 420.83 0.49 -74.00 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.10 Total: 18.79 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.17 Total: 8.23 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -4.63 Total: -110.21 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -3.17 Total: -38.75 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -74.49 0.49 -74.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102116148.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.630 kcal (2) G-P(sol) polarization free energy of solvation -74.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds