Wall clock time and date at job start Wed Apr 1 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.64064 * 2 1 4 4 C 1.54323 * 110.87041 * 236.75198 * 2 1 3 5 5 N 1.47022 * 107.26961 * 219.37184 * 4 2 1 6 6 C 1.36939 * 125.64928 * 178.98667 * 5 4 2 7 7 H 1.07996 * 120.00264 * 174.78824 * 6 5 4 8 8 C 1.38812 * 119.99771 * 354.78987 * 6 5 4 9 9 N 1.31618 * 120.00245 * 7.04991 * 8 6 5 10 10 Si 1.86798 * 119.99997 * 187.05484 * 8 6 5 11 11 H 1.48503 * 109.47675 * 94.98462 * 10 8 6 12 12 H 1.48503 * 109.47266 * 214.98960 * 10 8 6 13 13 H 1.48504 * 109.47002 * 334.98291 * 10 8 6 14 14 C 1.47429 * 108.70669 * 358.94174 * 5 4 2 15 15 C 1.54912 * 104.82834 * 24.12809 * 14 5 4 16 16 H 1.09001 * 111.03863 * 81.07986 * 15 14 5 17 17 C 1.52997 * 111.00329 * 204.91788 * 15 14 5 18 18 N 1.46497 * 109.47108 * 287.19376 * 17 15 14 19 19 C 1.34774 * 120.00256 * 179.97438 * 18 17 15 20 20 O 1.21289 * 119.99848 * 0.02562 * 19 18 17 21 21 C 1.50700 * 120.00412 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47264 * 180.02562 * 21 19 18 23 23 O 1.42902 * 109.46952 * 179.97438 * 22 21 19 24 24 C 1.42900 * 114.00013 * 179.97438 * 23 22 21 25 25 C 1.53178 * 109.54544 * 210.00213 * 24 23 22 26 26 C 1.53091 * 109.16461 * 183.15418 * 25 24 23 27 27 O 1.42901 * 109.41980 * 57.60342 * 26 25 24 28 28 C 1.42903 * 114.09914 * 298.85109 * 27 26 25 29 29 C 1.53088 * 109.42060 * 61.14816 * 28 27 26 30 30 H 1.09001 * 109.46995 * 296.85836 * 1 2 3 31 31 H 1.09000 * 109.47144 * 56.85991 * 1 2 3 32 32 H 1.08997 * 109.46885 * 176.85899 * 1 2 3 33 33 H 1.08992 * 109.88569 * 338.78837 * 4 2 1 34 34 H 1.09000 * 109.88262 * 99.95714 * 4 2 1 35 35 H 0.97003 * 119.99876 * 179.97438 * 9 8 6 36 36 H 1.08994 * 110.36669 * 265.28914 * 14 5 4 37 37 H 1.08996 * 110.36603 * 142.96555 * 14 5 4 38 38 H 1.09000 * 109.47006 * 167.19568 * 17 15 14 39 39 H 1.08998 * 109.47154 * 47.19712 * 17 15 14 40 40 H 0.97001 * 120.00095 * 0.02562 * 18 17 15 41 41 H 1.09000 * 109.47211 * 60.00171 * 21 19 18 42 42 H 1.08998 * 109.47051 * 300.00252 * 21 19 18 43 43 H 1.09000 * 109.47006 * 59.99875 * 22 21 19 44 44 H 1.08998 * 109.47154 * 300.00019 * 22 21 19 45 45 H 1.09009 * 109.61567 * 330.22485 * 24 23 22 46 46 H 1.09001 * 109.51847 * 303.05325 * 25 24 23 47 47 H 1.08993 * 109.52102 * 63.24371 * 25 24 23 48 48 H 1.08998 * 109.48526 * 177.59324 * 26 25 24 49 49 H 1.09009 * 109.48097 * 297.62277 * 26 25 24 50 50 H 1.09001 * 109.47752 * 301.16925 * 28 27 26 51 51 H 1.09000 * 109.49430 * 181.14585 * 28 27 26 52 52 H 1.09000 * 109.52790 * 182.48926 * 29 28 27 53 53 H 1.09000 * 109.52083 * 62.30213 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2494 -1.5470 -0.7354 6 6 4.0126 -2.3917 -1.4965 7 1 4.9036 -2.8376 -1.0798 8 6 3.6409 -2.6748 -2.8036 9 7 2.6374 -2.0278 -3.3574 10 14 4.5649 -3.9743 -3.7767 11 1 3.8535 -5.2734 -3.6678 12 1 4.6363 -3.5671 -5.2030 13 1 5.9395 -4.1157 -3.2329 14 6 3.4652 -1.2447 0.6914 15 6 2.0790 -0.7934 1.2152 16 1 1.4465 -1.6525 1.4388 17 6 2.2237 0.1111 2.4406 18 7 2.6288 -0.6932 3.5961 19 6 2.8186 -0.1047 4.7936 20 8 2.6536 1.0908 4.9147 21 6 3.2359 -0.9319 5.9821 22 6 3.3805 -0.0274 7.2076 23 8 3.7756 -0.8120 8.3347 24 6 3.9401 -0.0590 9.5381 25 6 5.0071 -0.7213 10.4152 26 6 5.1202 0.0463 11.7349 27 8 3.8465 0.0686 12.3823 28 6 2.8203 0.7179 11.6290 29 6 2.6147 -0.0228 10.3051 30 1 -0.3633 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3191 -1.4773 -1.5770 34 1 2.3775 -0.1016 -1.9963 35 1 2.3780 -2.2254 -4.2709 36 1 4.1930 -0.4410 0.8029 37 1 3.7993 -2.1364 1.2217 38 1 1.2692 0.5938 2.6506 39 1 2.9797 0.8712 2.2439 40 1 2.7611 -1.6492 3.4992 41 1 4.1903 -1.4146 5.7718 42 1 2.4800 -1.6920 6.1792 43 1 2.4259 0.4550 7.4178 44 1 4.1362 0.7330 7.0108 45 1 4.2482 0.9578 9.2943 46 1 4.7225 -1.7539 10.6177 47 1 5.9667 -0.7016 9.8988 48 1 5.8477 -0.4457 12.3805 49 1 5.4441 1.0678 11.5346 50 1 3.1140 1.7480 11.4274 51 1 1.8908 0.7098 12.1983 52 1 1.8635 0.4965 9.7100 53 1 2.2818 -1.0412 10.5054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102505262.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:36 Heat of formation + Delta-G solvation = -146.675973 kcal Electronic energy + Delta-G solvation = -29414.634440 eV Core-core repulsion = 25285.311834 eV Total energy + Delta-G solvation = -4129.322606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.99248 -40.52033 -39.58911 -38.44425 -36.05534 -34.67435 -34.02097 -32.54943 -32.18850 -32.10490 -30.55233 -27.86340 -26.79470 -25.63716 -24.85104 -24.53425 -23.75860 -21.76762 -21.58816 -21.33850 -20.58503 -18.89801 -18.46925 -17.49582 -17.43929 -17.23940 -16.91918 -16.73395 -16.62053 -16.16714 -15.79669 -15.76139 -15.58229 -15.09268 -14.96274 -14.61174 -14.42638 -14.37164 -14.19745 -14.03010 -13.44407 -13.41754 -13.26072 -13.08284 -12.94883 -12.85076 -12.70288 -12.65046 -12.40502 -12.32952 -12.08966 -11.92745 -11.85095 -11.79947 -11.56637 -11.42816 -11.36695 -11.36292 -10.89691 -10.68597 -10.67561 -10.50595 -10.06789 -8.88493 -7.85726 -5.19972 1.45945 1.47324 1.56219 1.61488 1.97561 2.49404 2.73987 2.95742 3.32076 3.62135 3.70744 3.73369 3.73649 3.83728 3.94193 3.95805 3.97159 4.03817 4.06725 4.17809 4.25564 4.37263 4.38433 4.49271 4.50393 4.58928 4.61315 4.68734 4.74892 4.75317 4.79614 4.81294 4.83293 4.85787 4.87981 4.97873 5.03850 5.09113 5.11110 5.16334 5.19469 5.34890 5.39142 5.48620 5.50453 5.71395 5.82269 6.17156 6.20743 6.21293 6.54264 7.10776 7.21857 7.78776 8.43630 9.24962 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.001635 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.638582 B =17123.286254 C =18156.323105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.191 3.809 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.949 5.949 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.268 1.268 14 C 0.137 3.863 15 C -0.090 4.090 16 H 0.090 0.910 17 C 0.144 3.856 18 N -0.716 5.716 19 C 0.517 3.483 20 O -0.587 6.587 21 C -0.132 4.132 22 C 0.081 3.919 23 O -0.391 6.391 24 C 0.083 3.917 25 C -0.150 4.150 26 C 0.061 3.939 27 O -0.403 6.403 28 C 0.061 3.939 29 C -0.176 4.176 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.018 0.982 34 H -0.004 1.004 35 H 0.246 0.754 36 H 0.016 0.984 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.415 0.585 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.113 0.887 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.108 0.892 52 H 0.079 0.921 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 4.149 29.401 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.091 0.909 4 C 0.066 3.934 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.101 0.899 8 C -0.259 4.259 9 N -0.598 5.598 10 Si 0.805 3.195 11 H -0.213 1.213 12 H -0.224 1.224 13 H -0.192 1.192 14 C 0.012 3.988 15 C -0.109 4.109 16 H 0.109 0.891 17 C 0.020 3.980 18 N -0.367 5.367 19 C 0.305 3.695 20 O -0.468 6.468 21 C -0.171 4.171 22 C 0.004 3.996 23 O -0.311 6.311 24 C 0.025 3.975 25 C -0.188 4.188 26 C -0.015 4.015 27 O -0.322 6.322 28 C -0.015 4.015 29 C -0.214 4.214 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.014 0.986 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.252 0.748 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.131 0.869 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.126 0.874 52 H 0.098 0.902 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.314 4.629 29.439 29.802 hybrid contribution 0.471 -0.634 -1.747 1.917 sum 0.158 3.995 27.692 27.979 Atomic orbital electron populations 1.21636 0.92991 1.01670 1.02166 1.22316 0.96975 0.98547 0.94352 0.90857 1.20986 0.88252 0.91907 0.92261 1.44802 1.32545 1.51497 1.06685 1.19462 1.04756 1.18556 0.94402 0.89936 1.25661 0.99821 1.02079 0.98365 1.70202 1.31791 1.44167 1.13645 0.85089 0.78267 0.78775 0.77388 1.21310 1.22379 1.19246 1.21777 0.95089 0.97549 0.84400 1.22469 0.96987 0.98346 0.93140 0.89140 1.21139 1.00325 0.93069 0.83442 1.45961 1.69214 1.12919 1.08621 1.20811 0.76093 0.87898 0.84704 1.90697 1.53394 1.17163 1.85511 1.21438 1.06112 0.99091 0.90504 1.22090 0.99555 0.92884 0.85087 1.87842 1.89395 1.35997 1.17835 1.22248 0.95363 0.95367 0.84484 1.22291 0.99358 1.01058 0.96120 1.22727 0.85451 1.00275 0.93064 1.87921 1.19692 1.79400 1.45171 1.22668 0.92059 0.95229 0.91560 1.22704 0.98366 1.02667 0.97687 0.90558 0.92818 0.93277 0.96373 0.98569 0.94464 0.96605 0.93156 0.90747 0.92510 0.74835 0.86335 0.86042 0.93009 0.93200 0.91470 0.90950 0.89352 0.86862 0.91873 0.92014 0.87385 0.90246 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.17 71.98 0.66 -3.02 16 2 C -0.10 -3.56 3.01 -9.60 -0.03 -3.59 16 3 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 4 C 0.19 9.30 4.98 86.73 0.43 9.73 16 5 N -0.63 -31.74 3.39 -692.00 -2.35 -34.09 16 6 C -0.24 -13.48 10.27 84.03 0.86 -12.62 16 7 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 8 C -0.07 -3.76 5.48 84.86 0.46 -3.29 16 9 N -0.95 -57.15 10.36 21.65 0.22 -56.92 16 10 Si 0.98 45.54 29.56 68.60 2.03 47.57 16 11 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.14 5.21 6.65 86.86 0.58 5.79 16 15 C -0.09 -2.72 2.49 -9.40 -0.02 -2.74 16 16 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 17 C 0.14 3.68 5.13 86.38 0.44 4.12 16 18 N -0.72 -15.08 5.50 -463.07 -2.55 -17.62 16 19 C 0.52 11.58 7.83 87.66 0.69 12.26 16 20 O -0.59 -17.79 15.98 -3.06 -0.05 -17.84 16 21 C -0.13 -2.07 6.07 29.85 0.18 -1.89 16 22 C 0.08 1.45 5.04 71.98 0.36 1.81 16 23 O -0.39 -7.00 10.00 -148.98 -1.49 -8.49 16 24 C 0.08 1.21 2.70 30.71 0.08 1.29 16 25 C -0.15 -1.87 5.79 30.68 0.18 -1.69 16 26 C 0.06 0.65 6.84 72.01 0.49 1.14 16 27 O -0.40 -6.05 10.77 -148.98 -1.60 -7.66 16 28 C 0.06 0.71 6.84 72.01 0.49 1.20 16 29 C -0.18 -2.34 5.76 30.68 0.18 -2.16 16 30 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.02 0.99 6.93 -2.39 -0.02 0.97 16 34 H 0.00 -0.22 7.61 -2.39 -0.02 -0.24 16 35 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.02 0.63 7.91 -2.39 -0.02 0.61 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.84 8.09 -2.39 -0.02 1.82 16 39 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 40 H 0.42 6.94 8.47 -92.71 -0.79 6.16 16 41 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 0.97 7.95 -2.39 -0.02 0.95 16 44 H 0.05 0.97 8.04 -2.39 -0.02 0.95 16 45 H 0.07 0.91 7.79 -2.38 -0.02 0.89 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 50 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.08 0.99 7.99 -2.39 -0.02 0.97 16 53 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -72.71 417.64 0.34 -72.37 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.08 Total: 16.33 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.04 Total: 6.36 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -4.67 Total: -108.64 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -3.14 Total: -33.99 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -72.71 0.34 -72.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102505262.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.302 kcal (2) G-P(sol) polarization free energy of solvation -72.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds