Wall clock time and date at job start Wed Apr 1 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 114.00009 * 2 1 4 4 C 1.53003 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.50705 * 110.74940 * 297.98004 * 4 3 2 6 6 O 1.21281 * 119.99617 * 242.01876 * 5 4 3 7 7 N 1.34774 * 119.99934 * 62.01941 * 5 4 3 8 8 C 1.46498 * 120.00123 * 179.97438 * 7 5 4 9 9 C 1.52991 * 109.47441 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.47232 * 179.97438 * 9 8 7 11 11 H 1.09007 * 110.88288 * 54.30204 * 10 9 8 12 12 C 1.54909 * 111.00563 * 290.41941 * 10 9 8 13 13 N 1.47465 * 104.80749 * 204.94896 * 12 10 9 14 14 C 1.36943 * 125.62438 * 204.04442 * 13 12 10 15 15 H 1.07993 * 119.99912 * 0.02562 * 14 13 12 16 16 C 1.38814 * 119.99761 * 180.02562 * 14 13 12 17 17 N 1.31617 * 120.00063 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99946 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47229 * 59.99872 * 18 16 14 20 20 H 1.48500 * 109.47163 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46845 * 300.00131 * 18 16 14 22 22 C 1.47012 * 108.72808 * 24.07173 * 13 12 10 23 23 C 1.54332 * 107.27183 * 358.97198 * 22 13 12 24 24 H 1.09001 * 110.71981 * 96.17329 * 23 22 13 25 25 C 1.52997 * 110.72196 * 219.44641 * 23 22 13 26 26 C 1.55566 * 111.01264 * 174.40783 * 4 3 2 27 27 C 1.54944 * 100.82489 * 207.60464 * 26 4 3 28 28 O 1.43645 * 105.22260 * 36.43849 * 27 26 4 29 29 C 1.43235 * 109.97529 * 335.52671 * 28 27 26 30 30 H 1.09005 * 109.47199 * 59.99864 * 1 2 3 31 31 H 1.09000 * 109.47340 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47455 * 300.00164 * 1 2 3 33 33 H 1.08993 * 109.46866 * 59.99799 * 3 2 1 34 34 H 1.09005 * 109.46780 * 299.99587 * 3 2 1 35 35 H 0.97001 * 120.00393 * 359.97438 * 7 5 4 36 36 H 1.09010 * 109.47124 * 300.00436 * 8 7 5 37 37 H 1.09006 * 109.47111 * 59.99703 * 8 7 5 38 38 H 1.09003 * 109.47351 * 299.99856 * 9 8 7 39 39 H 1.08994 * 109.47366 * 60.00124 * 9 8 7 40 40 H 1.09006 * 110.36261 * 323.75429 * 12 10 9 41 41 H 1.08992 * 110.36592 * 86.07320 * 12 10 9 42 42 H 0.97004 * 119.99878 * 179.97438 * 17 16 14 43 43 H 1.09005 * 109.88678 * 239.56096 * 22 13 12 44 44 H 1.08996 * 110.01854 * 118.46167 * 22 13 12 45 45 H 1.08998 * 109.47184 * 173.51915 * 25 23 22 46 46 H 1.08999 * 109.47151 * 293.52222 * 25 23 22 47 47 H 1.09001 * 109.47310 * 53.52045 * 25 23 22 48 48 H 1.08997 * 111.22347 * 89.69902 * 26 4 3 49 49 H 1.09003 * 111.13190 * 325.46499 * 26 4 3 50 50 H 1.09002 * 110.30953 * 277.47426 * 27 26 4 51 51 H 1.09000 * 110.30834 * 155.40499 * 27 26 4 52 52 H 1.08995 * 109.83514 * 121.22466 * 29 28 27 53 53 H 1.09003 * 109.82666 * 242.20160 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.0160 0.4832 1.2436 6 8 4.7400 1.0627 2.0251 7 7 3.6412 -0.7882 1.4878 8 6 4.1087 -1.4703 2.6970 9 6 3.5431 -2.8914 2.7320 10 6 4.0319 -3.6040 3.9946 11 1 3.7932 -3.0233 4.8857 12 6 5.5508 -3.8978 3.9136 13 7 5.7595 -5.0520 4.8074 14 6 6.9385 -5.3831 5.4204 15 1 7.8173 -4.7750 5.2651 16 6 7.0039 -6.5006 6.2414 17 7 5.9330 -7.2420 6.4302 18 14 8.6118 -6.9519 7.0782 19 1 9.0430 -5.8352 7.9571 20 1 8.4181 -8.1772 7.8945 21 1 9.6525 -7.2017 6.0486 22 6 4.4932 -5.7885 4.9309 23 6 3.4413 -5.0357 4.0891 24 1 3.3493 -5.4811 3.0986 25 6 2.0886 -5.0171 4.8037 26 6 4.2056 2.5815 -0.1422 27 6 5.5423 2.1952 -0.8240 28 8 5.2124 1.1217 -1.7197 29 6 4.0282 0.4542 -1.2683 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8901 35 1 3.0618 -1.2516 0.8629 36 1 5.1980 -1.5132 2.6918 37 1 3.7710 -0.9226 3.5768 38 1 2.4539 -2.8489 2.7370 39 1 3.8812 -3.4389 1.8523 40 1 5.8338 -4.1530 2.8924 41 1 6.1225 -3.0382 4.2630 42 1 5.9788 -8.0231 7.0037 43 1 4.1811 -5.8170 5.9749 44 1 4.6135 -6.8035 4.5523 45 1 1.3938 -4.3856 4.2500 46 1 1.6929 -6.0313 4.8588 47 1 2.2153 -4.6213 5.8114 48 1 4.3790 3.0365 0.8330 49 1 3.6144 3.2381 -0.7805 50 1 6.2634 1.8583 -0.0792 51 1 5.9420 3.0429 -1.3804 52 1 3.2615 0.4977 -2.0418 53 1 4.2572 -0.5847 -1.0309 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103276446.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:58 Heat of formation + Delta-G solvation = -136.969515 kcal Electronic energy + Delta-G solvation = -31080.397393 eV Core-core repulsion = 26951.495691 eV Total energy + Delta-G solvation = -4128.901703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.87967 -39.92042 -39.27482 -38.60644 -36.47612 -35.01081 -34.17389 -32.53659 -32.40720 -30.66912 -28.49226 -27.92783 -27.43241 -26.17132 -25.79884 -24.12339 -23.43571 -23.02334 -21.50407 -20.93976 -20.45093 -18.86274 -18.72652 -17.57791 -17.27142 -17.08151 -16.83660 -16.62801 -16.32127 -16.28679 -15.99103 -15.76409 -15.61104 -15.31567 -14.94424 -14.54035 -14.29545 -14.15308 -14.09605 -13.82872 -13.43431 -13.35213 -13.31116 -12.94443 -12.86660 -12.78785 -12.70857 -12.61392 -12.42559 -12.33579 -12.24992 -12.22318 -11.93637 -11.90008 -11.80293 -11.43237 -11.26477 -11.16631 -10.88731 -10.70231 -10.60204 -10.54003 -10.06781 -8.89075 -7.85550 -5.20940 1.42722 1.46452 1.49830 1.52736 2.09867 2.48334 2.60620 2.86819 3.21898 3.31436 3.57592 3.67380 3.73985 3.78951 3.89932 3.95039 4.03813 4.11340 4.22956 4.28007 4.34587 4.40498 4.49470 4.51713 4.60967 4.62618 4.65757 4.67889 4.70113 4.73880 4.74677 4.80801 4.82183 4.88853 4.99908 5.00194 5.00966 5.04140 5.12204 5.17826 5.27955 5.40003 5.45612 5.47048 5.53518 5.75117 5.83599 5.89824 6.13737 6.20596 6.55639 7.10761 7.22020 7.78548 8.43150 9.24222 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015236 B = 0.002450 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.303711 B =11424.528239 C =12753.677097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.085 3.915 4 C -0.111 4.111 5 C 0.520 3.480 6 O -0.581 6.581 7 N -0.704 5.704 8 C 0.124 3.876 9 C -0.097 4.097 10 C -0.078 4.078 11 H 0.072 0.928 12 C 0.133 3.867 13 N -0.631 5.631 14 C -0.247 4.247 15 H 0.077 0.923 16 C -0.066 4.066 17 N -0.950 5.950 18 Si 0.978 3.022 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.190 3.810 23 C -0.101 4.101 24 H 0.079 0.921 25 C -0.126 4.126 26 C -0.125 4.125 27 C 0.047 3.953 28 O -0.402 6.402 29 C 0.070 3.930 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.418 0.582 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.022 0.978 41 H 0.030 0.970 42 H 0.247 0.753 43 H 0.011 0.989 44 H -0.001 1.001 45 H 0.082 0.918 46 H 0.052 0.948 47 H 0.040 0.960 48 H 0.090 0.910 49 H 0.121 0.879 50 H 0.041 0.959 51 H 0.112 0.888 52 H 0.107 0.893 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.994 20.084 -18.456 31.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.008 3.992 4 C -0.114 4.114 5 C 0.306 3.694 6 O -0.461 6.461 7 N -0.356 5.356 8 C 0.000 4.000 9 C -0.135 4.135 10 C -0.098 4.098 11 H 0.090 0.910 12 C 0.008 3.992 13 N -0.357 5.357 14 C -0.376 4.376 15 H 0.095 0.905 16 C -0.259 4.259 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.065 3.935 23 C -0.120 4.120 24 H 0.097 0.903 25 C -0.183 4.183 26 C -0.163 4.163 27 C -0.029 4.029 28 O -0.322 6.322 29 C -0.006 4.006 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.256 0.744 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.029 0.971 44 H 0.017 0.983 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.139 0.861 50 H 0.059 0.941 51 H 0.130 0.870 52 H 0.125 0.875 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.185 20.080 -17.938 30.912 hybrid contribution 0.837 -0.782 1.045 1.550 sum -14.348 19.298 -16.894 29.388 Atomic orbital electron populations 1.22914 0.78690 1.04076 1.00936 1.87720 1.21895 1.27412 1.95644 1.22388 0.87935 0.85828 1.03010 1.22494 0.97623 0.97887 0.93443 1.20590 0.79562 0.82053 0.87146 1.90689 1.38705 1.66715 1.50027 1.45965 1.51081 1.13365 1.25205 1.21277 0.98559 0.93015 0.87170 1.21565 1.02042 0.92711 0.97203 1.22189 0.93916 0.95448 0.98256 0.91008 1.21824 0.95611 0.89067 0.92687 1.44828 1.07727 1.28980 1.54178 1.19423 0.88571 1.08022 1.21568 0.90522 1.25651 1.00926 0.97985 1.01359 1.70192 1.28791 1.18437 1.42454 0.85163 0.78971 0.77108 0.78162 1.20393 1.21706 1.20352 1.21007 0.84035 0.92465 0.95973 1.22366 0.95337 0.94997 0.99338 0.90256 1.21624 0.95127 1.01908 0.99657 1.23246 0.95691 0.93940 1.03397 1.23486 0.96868 0.90114 0.92452 1.88390 1.45179 1.48091 1.50513 1.23228 0.87719 0.95700 0.93993 0.92367 0.88448 0.93744 0.92125 0.88743 0.74358 0.93477 0.92271 0.88499 0.90556 0.96072 0.95118 0.94399 0.97091 0.98262 0.89876 0.92861 0.94073 0.89119 0.86110 0.94076 0.86988 0.87529 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -4.53 8.31 -148.98 -1.24 -5.77 16 3 C 0.09 0.87 4.74 71.98 0.34 1.22 16 4 C -0.11 -1.78 0.63 -51.57 -0.03 -1.81 16 5 C 0.52 12.59 6.31 87.66 0.55 13.14 16 6 O -0.58 -18.88 15.62 -3.03 -0.05 -18.93 16 7 N -0.70 -15.37 4.96 -463.06 -2.30 -17.67 16 8 C 0.12 3.19 5.55 86.38 0.48 3.67 16 9 C -0.10 -2.29 4.84 30.59 0.15 -2.14 16 10 C -0.08 -2.58 2.48 -9.40 -0.02 -2.61 16 11 H 0.07 2.46 8.05 -2.38 -0.02 2.44 16 12 C 0.13 5.69 6.04 86.85 0.52 6.22 16 13 N -0.63 -34.16 3.40 -691.89 -2.35 -36.51 16 14 C -0.25 -14.62 10.28 84.03 0.86 -13.76 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 16 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 17 N -0.95 -59.06 10.31 21.65 0.22 -58.84 16 18 Si 0.98 47.63 29.55 68.60 2.03 49.66 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 C 0.19 9.67 4.97 86.73 0.43 10.10 16 23 C -0.10 -3.60 3.02 -9.60 -0.03 -3.63 16 24 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 25 C -0.13 -3.66 9.16 71.98 0.66 -3.00 16 26 C -0.13 -1.78 5.87 32.14 0.19 -1.59 16 27 C 0.05 0.84 7.57 72.65 0.55 1.39 16 28 O -0.40 -8.47 11.36 -148.98 -1.69 -10.17 16 29 C 0.07 1.15 6.71 72.45 0.49 1.64 16 30 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.04 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.47 8.13 -2.38 -0.02 0.45 16 35 H 0.42 7.29 6.56 -92.71 -0.61 6.69 16 36 H 0.05 1.45 7.59 -2.38 -0.02 1.43 16 37 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 1.74 8.03 -2.39 -0.02 1.72 16 40 H 0.02 0.90 7.96 -2.38 -0.02 0.88 16 41 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 42 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.01 0.62 7.01 -2.38 -0.02 0.60 16 44 H 0.00 -0.05 7.50 -2.39 -0.02 -0.07 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.30 8.06 -2.39 -0.02 1.28 16 48 H 0.09 1.55 7.28 -2.39 -0.02 1.54 16 49 H 0.12 0.90 8.04 -2.39 -0.02 0.88 16 50 H 0.04 0.95 8.13 -2.39 -0.02 0.93 16 51 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.11 1.23 7.81 -2.39 -0.02 1.22 16 53 H 0.06 1.18 7.44 -2.39 -0.02 1.17 16 Total: -1.00 -78.08 412.64 1.74 -76.33 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.26 Total: 15.08 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 6.85 Total: 6.81 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -4.42 Total: -113.02 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -2.98 Total: -34.86 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -78.08 1.74 -76.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103276446.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.636 kcal (2) G-P(sol) polarization free energy of solvation -78.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds