Wall clock time and date at job start Wed Apr 1 2020 00:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.91470 * 2 1 4 4 C 1.54910 * 111.00454 * 236.10274 * 2 1 3 5 5 N 1.47426 * 104.83373 * 204.91811 * 4 2 1 6 6 C 1.36936 * 125.64602 * 204.16653 * 5 4 2 7 7 H 1.07998 * 119.99933 * 179.97438 * 6 5 4 8 8 C 1.38810 * 120.00201 * 359.95099 * 6 5 4 9 9 N 1.31616 * 120.00069 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99974 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47126 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47030 * 120.00067 * 10 8 6 13 13 H 1.48501 * 109.47106 * 240.00199 * 10 8 6 14 14 C 1.47022 * 108.69967 * 24.12539 * 5 4 2 15 15 C 1.54314 * 107.27471 * 358.94486 * 14 5 4 16 16 H 1.09000 * 110.72176 * 96.34615 * 15 14 5 17 17 C 1.53000 * 110.72156 * 219.44242 * 15 14 5 18 18 C 1.52997 * 109.47273 * 293.54759 * 17 15 14 19 19 N 1.46499 * 109.47555 * 179.97438 * 18 17 15 20 20 C 1.34777 * 120.00199 * 180.02562 * 19 18 17 21 21 O 1.21283 * 119.99750 * 359.97438 * 20 19 18 22 22 C 1.50702 * 119.99928 * 180.27479 * 20 19 18 23 23 O 1.42899 * 109.46876 * 179.72354 * 22 20 19 24 24 C 1.42901 * 113.99607 * 179.97438 * 23 22 20 25 25 C 1.53006 * 109.46807 * 179.97438 * 24 23 22 26 26 H 1.08996 * 110.43192 * 303.90616 * 25 24 23 27 27 C 1.54812 * 110.48642 * 181.22087 * 25 24 23 28 28 C 1.54993 * 102.09134 * 220.44163 * 27 25 24 29 29 O 1.44383 * 103.48863 * 37.02437 * 28 27 25 30 30 C 1.43743 * 106.97614 * 319.93942 * 29 28 27 31 31 H 1.08999 * 109.47372 * 296.09698 * 1 2 3 32 32 H 1.09001 * 109.47435 * 56.09579 * 1 2 3 33 33 H 1.08997 * 109.47297 * 176.09118 * 1 2 3 34 34 H 1.08999 * 110.36573 * 86.07594 * 4 2 1 35 35 H 1.09005 * 110.45929 * 323.80289 * 4 2 1 36 36 H 0.97003 * 120.00344 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.87818 * 239.51944 * 14 5 4 38 38 H 1.09004 * 110.00736 * 118.43464 * 14 5 4 39 39 H 1.08998 * 109.47307 * 173.54235 * 17 15 14 40 40 H 1.09005 * 109.46653 * 53.54169 * 17 15 14 41 41 H 1.08998 * 109.47382 * 59.99521 * 18 17 15 42 42 H 1.09002 * 109.47216 * 299.99958 * 18 17 15 43 43 H 0.97000 * 119.99484 * 359.97438 * 19 18 17 44 44 H 1.09004 * 109.46965 * 299.72211 * 22 20 19 45 45 H 1.08994 * 109.46990 * 59.72065 * 22 20 19 46 46 H 1.09003 * 109.47075 * 299.99807 * 24 23 22 47 47 H 1.09001 * 109.47248 * 60.00362 * 24 23 22 48 48 H 1.09006 * 110.90915 * 338.64333 * 27 25 24 49 49 H 1.09003 * 110.90596 * 102.23995 * 27 25 24 50 50 H 1.08995 * 110.62115 * 278.52072 * 28 27 25 51 51 H 1.09003 * 110.61562 * 155.51971 * 28 27 25 52 52 H 1.08998 * 109.87597 * 267.09157 * 30 29 28 53 53 H 1.09000 * 110.00265 * 146.01280 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4271 -1.2431 -0.7734 6 6 4.4644 -1.5652 -1.6073 7 1 5.4130 -1.8749 -1.1944 8 6 4.2964 -1.4944 -2.9834 9 7 3.1403 -1.1170 -3.4867 10 14 5.7113 -1.9346 -4.1210 11 1 6.8938 -2.3249 -3.3120 12 1 5.3116 -3.0691 -4.9918 13 1 6.0529 -0.7603 -4.9634 14 6 3.4673 -1.2742 0.6959 15 6 2.0861 -0.8081 1.2021 16 1 1.4478 -1.6634 1.4238 17 6 2.2349 0.0874 2.4338 18 6 2.7848 -0.7365 3.5998 19 7 2.9279 0.1210 4.7790 20 6 3.3989 -0.3926 5.9327 21 8 3.7038 -1.5648 5.9947 22 6 3.5402 0.4881 7.1474 23 8 4.0495 -0.2825 8.2377 24 6 4.2225 0.4623 9.4449 25 6 4.7687 -0.4583 10.5382 26 1 4.1114 -1.3168 10.6763 27 6 4.9364 0.3185 11.8668 28 6 6.2826 -0.2354 12.3990 29 8 7.0736 -0.4046 11.2030 30 6 6.1960 -0.9224 10.1892 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3634 -1.0252 -0.0701 34 1 2.1559 -0.1718 -2.0837 35 1 1.4524 -1.6703 -1.4045 36 1 3.0230 -1.0671 -4.4483 37 1 4.2426 -0.5999 1.0598 38 1 3.6661 -2.2885 1.0421 39 1 1.2618 0.4967 2.7051 40 1 2.9224 0.9029 2.2091 41 1 3.7579 -1.1458 3.3285 42 1 2.0975 -1.5521 3.8245 43 1 2.6843 1.0586 4.7292 44 1 4.2283 1.3041 6.9265 45 1 2.5659 0.8968 7.4151 46 1 4.9250 1.2775 9.2714 47 1 3.2625 0.8708 9.7606 48 1 5.0019 1.3912 11.6846 49 1 4.1227 0.0914 12.5556 50 1 6.1332 -1.1924 12.8989 51 1 6.7532 0.4811 13.0722 52 1 6.2402 -2.0114 10.1818 53 1 6.4839 -0.5333 9.2126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103487734.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:28 Heat of formation + Delta-G solvation = -140.495614 kcal Electronic energy + Delta-G solvation = -29158.689170 eV Core-core repulsion = 25029.634564 eV Total energy + Delta-G solvation = -4129.054606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.92510 -40.44469 -39.73326 -38.40901 -36.43563 -35.01559 -33.91041 -32.60535 -32.52376 -30.63267 -29.44232 -28.07847 -27.22420 -26.31994 -25.42704 -23.52527 -23.35668 -21.88214 -21.48463 -21.31175 -20.62019 -18.88026 -18.29216 -17.91232 -17.73981 -17.16881 -16.99902 -16.90141 -16.45457 -16.28974 -15.96487 -15.75496 -15.59474 -15.17594 -14.89839 -14.58827 -14.32498 -14.12438 -13.90058 -13.68277 -13.54821 -13.37950 -13.30218 -12.88461 -12.86624 -12.78140 -12.73952 -12.63546 -12.40383 -12.18191 -12.16236 -12.04401 -11.93843 -11.77638 -11.61360 -11.42497 -11.26045 -11.09499 -10.81129 -10.74036 -10.72516 -10.61298 -10.10861 -8.87725 -7.78128 -5.22510 1.44076 1.45047 1.55568 1.58702 1.81130 2.48003 2.90403 3.01727 3.30304 3.55592 3.70719 3.72020 3.76723 3.85047 3.93452 3.93950 4.08047 4.21273 4.23759 4.28017 4.29954 4.34467 4.35978 4.39458 4.52555 4.53127 4.63320 4.68611 4.74151 4.80621 4.80836 4.84160 4.86188 4.88555 5.01784 5.02243 5.04196 5.13598 5.17646 5.20578 5.30154 5.40828 5.43487 5.46266 5.55935 5.77541 5.85935 5.88319 6.07664 6.32359 6.58976 7.11469 7.26348 7.79308 8.43080 9.23115 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.001624 C = 0.001509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.356434 B =17234.632351 C =18550.345550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.073 0.927 4 C 0.159 3.841 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.075 0.925 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.270 1.270 12 H -0.292 1.292 13 H -0.287 1.287 14 C 0.133 3.867 15 C -0.080 4.080 16 H 0.076 0.924 17 C -0.098 4.098 18 C 0.124 3.876 19 N -0.711 5.711 20 C 0.503 3.497 21 O -0.581 6.581 22 C 0.049 3.951 23 O -0.399 6.399 24 C 0.068 3.932 25 C -0.122 4.122 26 H 0.089 0.911 27 C -0.137 4.137 28 C 0.036 3.964 29 O -0.407 6.407 30 C 0.050 3.950 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.068 0.932 35 H -0.019 1.019 36 H 0.247 0.753 37 H 0.025 0.975 38 H 0.008 0.992 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.421 0.579 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.066 0.934 51 H 0.109 0.891 52 H 0.051 0.949 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 11.108 31.734 33.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.034 3.966 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.093 0.907 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.195 1.195 12 H -0.219 1.219 13 H -0.214 1.214 14 C 0.008 3.992 15 C -0.099 4.099 16 H 0.095 0.905 17 C -0.136 4.136 18 C 0.000 4.000 19 N -0.365 5.365 20 C 0.290 3.710 21 O -0.460 6.460 22 C -0.030 4.030 23 O -0.318 6.318 24 C -0.008 4.008 25 C -0.140 4.140 26 H 0.108 0.892 27 C -0.175 4.175 28 C -0.040 4.040 29 O -0.327 6.327 30 C -0.027 4.027 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.086 0.914 35 H -0.001 1.001 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.026 0.974 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.258 0.742 44 H 0.126 0.874 45 H 0.134 0.866 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.124 0.876 50 H 0.084 0.916 51 H 0.127 0.873 52 H 0.069 0.931 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.061 10.098 31.546 33.371 hybrid contribution 0.614 -0.410 -1.341 1.531 sum -3.447 9.688 30.205 31.907 Atomic orbital electron populations 1.21596 0.92897 1.01479 1.02444 1.22472 0.96579 0.98431 0.94436 0.90827 1.21802 0.83529 0.94806 0.96472 1.44854 1.10531 1.78942 1.01165 1.19483 0.91907 1.37378 0.88223 0.90704 1.25615 0.99796 1.02525 0.98006 1.70073 1.23992 1.54897 1.10714 0.85003 0.78594 0.77063 0.78634 1.19464 1.21897 1.21412 1.21571 0.96846 0.96866 0.83930 1.22060 0.95022 0.98337 0.94494 0.90525 1.21626 1.03089 0.97502 0.91389 1.21263 1.00468 0.93688 0.84536 1.45748 1.66026 1.14789 1.09933 1.21045 0.76409 0.88299 0.85280 1.90734 1.50582 1.19653 1.85051 1.22326 1.02785 0.92931 0.84948 1.87973 1.86149 1.37499 1.20198 1.22741 1.01253 0.93667 0.83102 1.22563 0.96439 0.99829 0.95203 0.89212 1.23141 0.98520 1.01114 0.94699 1.23809 0.91064 1.01279 0.87857 1.88862 1.35499 1.85971 1.22367 1.23184 0.89270 0.98183 0.92035 0.89874 0.92919 0.93638 0.91352 1.00059 0.94334 0.95684 0.97438 0.87948 0.90573 0.93751 0.92175 0.74160 0.87427 0.86579 0.91691 0.90177 0.89030 0.87644 0.91568 0.87272 0.93079 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.31 71.98 0.67 -2.80 16 2 C -0.10 -3.48 3.09 -9.40 -0.03 -3.51 16 3 H 0.07 2.51 8.05 -2.39 -0.02 2.49 16 4 C 0.16 7.91 5.36 86.86 0.47 8.37 16 5 N -0.63 -33.59 3.39 -692.00 -2.35 -35.94 16 6 C -0.24 -14.08 10.27 84.03 0.86 -13.21 16 7 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 9 N -0.95 -57.51 10.09 21.65 0.22 -57.29 16 10 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 14 C 0.13 5.65 5.99 86.73 0.52 6.17 16 15 C -0.08 -2.52 2.45 -9.61 -0.02 -2.55 16 16 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 17 C -0.10 -2.11 4.72 30.59 0.14 -1.97 16 18 C 0.12 2.94 5.52 86.38 0.48 3.42 16 19 N -0.71 -12.51 5.56 -463.06 -2.57 -15.08 16 20 C 0.50 11.39 7.91 87.66 0.69 12.08 16 21 O -0.58 -20.37 16.50 16.00 0.26 -20.10 16 22 C 0.05 0.65 6.42 71.24 0.46 1.11 16 23 O -0.40 -7.63 9.62 -129.94 -1.25 -8.88 16 24 C 0.07 0.76 5.03 71.98 0.36 1.13 16 25 C -0.12 -1.52 3.34 -9.80 -0.03 -1.55 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 C -0.14 -0.98 6.71 31.89 0.21 -0.77 16 28 C 0.04 0.38 7.72 72.66 0.56 0.94 16 29 O -0.41 -7.85 11.52 -148.98 -1.72 -9.57 16 30 C 0.05 0.91 7.23 72.35 0.52 1.43 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.30 8.07 -2.39 -0.02 1.29 16 34 H 0.07 3.89 5.87 -2.39 -0.01 3.88 16 35 H -0.02 -1.01 7.99 -2.38 -0.02 -1.03 16 36 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 37 H 0.03 1.05 7.76 -2.39 -0.02 1.03 16 38 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 1.61 8.06 -2.38 -0.02 1.60 16 41 H 0.04 1.32 7.49 -2.39 -0.02 1.30 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.42 3.80 8.47 -92.71 -0.79 3.02 16 44 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 48 H 0.09 0.48 7.87 -2.38 -0.02 0.46 16 49 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 53 H 0.08 1.56 7.60 -2.39 -0.02 1.54 16 Total: -1.00 -83.10 419.49 1.04 -82.07 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.09 Total: 10.91 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 6.33 Total: 4.86 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.70 Total: -108.31 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -2.70 Total: -38.55 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -83.10 1.04 -82.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103487734.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.429 kcal (2) G-P(sol) polarization free energy of solvation -83.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds