Wall clock time and date at job start Wed Apr 1 2020 00:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.64021 * 2 1 4 4 C 1.54327 * 110.87088 * 236.75927 * 2 1 3 5 5 N 1.47025 * 107.26904 * 219.37180 * 4 2 1 6 6 C 1.36938 * 125.64783 * 178.98454 * 5 4 2 7 7 H 1.07999 * 120.00412 * 174.78364 * 6 5 4 8 8 C 1.38814 * 119.99976 * 354.78925 * 6 5 4 9 9 N 1.31620 * 120.00051 * 7.04833 * 8 6 5 10 10 Si 1.86805 * 119.99804 * 187.05333 * 8 6 5 11 11 H 1.48497 * 109.46890 * 94.98435 * 10 8 6 12 12 H 1.48501 * 109.46610 * 214.98131 * 10 8 6 13 13 H 1.48500 * 109.47236 * 334.98247 * 10 8 6 14 14 C 1.47423 * 108.70707 * 358.93431 * 5 4 2 15 15 C 1.54916 * 104.82920 * 24.13242 * 14 5 4 16 16 H 1.08999 * 111.03855 * 81.07759 * 15 14 5 17 17 C 1.52998 * 111.00538 * 204.91695 * 15 14 5 18 18 C 1.53001 * 109.46858 * 287.19246 * 17 15 14 19 19 N 1.46506 * 109.47186 * 179.97438 * 18 17 15 20 20 C 1.34766 * 119.99981 * 180.02562 * 19 18 17 21 21 O 1.21281 * 120.00393 * 0.02562 * 20 19 18 22 22 C 1.50698 * 119.99823 * 180.02562 * 20 19 18 23 23 O 1.42907 * 109.47205 * 180.02562 * 22 20 19 24 24 C 1.42899 * 114.00227 * 180.02562 * 23 22 20 25 25 C 1.53176 * 109.54501 * 269.55831 * 24 23 22 26 26 C 1.53089 * 109.16572 * 183.14870 * 25 24 23 27 27 O 1.42901 * 109.41390 * 57.60847 * 26 25 24 28 28 C 1.42902 * 114.09780 * 298.84489 * 27 26 25 29 29 C 1.53099 * 109.41854 * 61.15456 * 28 27 26 30 30 H 1.09001 * 109.46747 * 296.84842 * 1 2 3 31 31 H 1.08996 * 109.47686 * 56.85537 * 1 2 3 32 32 H 1.09008 * 109.46931 * 176.85570 * 1 2 3 33 33 H 1.09002 * 109.88014 * 338.78338 * 4 2 1 34 34 H 1.08994 * 109.88724 * 99.95590 * 4 2 1 35 35 H 0.96999 * 119.99744 * 180.02562 * 9 8 6 36 36 H 1.08993 * 110.36936 * 265.29687 * 14 5 4 37 37 H 1.08996 * 110.36774 * 142.96858 * 14 5 4 38 38 H 1.08995 * 109.47141 * 167.19571 * 17 15 14 39 39 H 1.09000 * 109.47047 * 47.19578 * 17 15 14 40 40 H 1.09009 * 109.47067 * 60.00213 * 18 17 15 41 41 H 1.09000 * 109.47563 * 300.00016 * 18 17 15 42 42 H 0.96998 * 119.99497 * 0.02562 * 19 18 17 43 43 H 1.09002 * 109.47348 * 60.00087 * 22 20 19 44 44 H 1.08999 * 109.47425 * 299.99689 * 22 20 19 45 45 H 1.09007 * 109.61267 * 29.77783 * 24 23 22 46 46 H 1.08999 * 109.52468 * 303.05686 * 25 24 23 47 47 H 1.09007 * 109.52383 * 63.24307 * 25 24 23 48 48 H 1.08998 * 109.48069 * 297.62846 * 26 25 24 49 49 H 1.08999 * 109.49033 * 177.59570 * 26 25 24 50 50 H 1.08997 * 109.47996 * 301.17122 * 28 27 26 51 51 H 1.08998 * 109.49488 * 181.14707 * 28 27 26 52 52 H 1.08994 * 109.51891 * 182.48531 * 29 28 27 53 53 H 1.08998 * 109.51531 * 62.30105 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7904 -1.2061 5 7 3.2494 -1.5469 -0.7356 6 6 4.0125 -2.3916 -1.4968 7 1 4.9036 -2.8374 -1.0802 8 6 3.6408 -2.6746 -2.8039 9 7 2.6373 -2.0275 -3.3576 10 14 4.5649 -3.9740 -3.7771 11 1 3.8535 -5.2730 -3.6683 12 1 4.6361 -3.5666 -5.2034 13 1 5.9395 -4.1154 -3.2334 14 6 3.4653 -1.2447 0.6911 15 6 2.0790 -0.7935 1.2151 16 1 1.4466 -1.6526 1.4387 17 6 2.2238 0.1110 2.4405 18 6 2.6469 -0.7291 3.6472 19 7 2.7861 0.1371 4.8206 20 6 3.1538 -0.3881 6.0060 21 8 3.3700 -1.5777 6.1014 22 6 3.2964 0.5027 7.2131 23 8 3.6930 -0.2817 8.3399 24 6 3.8566 0.4710 9.5435 25 6 5.3049 0.9582 9.6503 26 6 5.4904 1.6956 10.9790 27 8 5.1479 0.8237 12.0580 28 6 3.7917 0.3738 12.0366 29 6 3.5378 -0.4167 10.7503 30 1 -0.3633 0.4641 0.9169 31 1 -0.3634 0.5618 -0.8604 32 1 -0.3633 -1.0262 -0.0564 33 1 1.3189 -1.4772 -1.5771 34 1 2.3774 -0.1014 -1.9964 35 1 2.3774 -2.2255 -4.2709 36 1 4.1930 -0.4409 0.8027 37 1 3.7994 -2.1364 1.2215 38 1 1.2693 0.5937 2.6506 39 1 2.9798 0.8712 2.2438 40 1 3.6015 -1.2118 3.4371 41 1 1.8909 -1.4892 3.8440 42 1 2.6136 1.0885 4.7442 43 1 2.3418 0.9850 7.4236 44 1 4.0521 1.2631 7.0163 45 1 3.1834 1.3282 9.5334 46 1 5.9806 0.1038 9.6104 47 1 5.5233 1.6353 8.8243 48 1 4.8439 2.5728 11.0012 49 1 6.5300 2.0076 11.0797 50 1 3.1229 1.2337 12.0728 51 1 3.6072 -0.2665 12.8992 52 1 2.4925 -0.7230 10.7114 53 1 4.1777 -1.2989 10.7328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103487897.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:47 Heat of formation + Delta-G solvation = -144.794192 kcal Electronic energy + Delta-G solvation = -29385.484961 eV Core-core repulsion = 25256.243955 eV Total energy + Delta-G solvation = -4129.241006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.00914 -40.36190 -39.70674 -38.25517 -36.43899 -35.00669 -33.56716 -32.59343 -32.49516 -32.09947 -29.58726 -28.06225 -27.21996 -25.57956 -25.06611 -24.54584 -23.42349 -21.87341 -21.45391 -21.28526 -20.65872 -18.85902 -18.38857 -18.00784 -17.29789 -17.12888 -16.95415 -16.84538 -16.38770 -16.19194 -15.86311 -15.74333 -15.56090 -15.13470 -15.04788 -14.51392 -14.34967 -14.24155 -14.14245 -13.76074 -13.68284 -13.40049 -13.33877 -13.25798 -12.93534 -12.79791 -12.70197 -12.42594 -12.37895 -12.25603 -12.19514 -11.92427 -11.88802 -11.82956 -11.40892 -11.37336 -11.26711 -11.14418 -10.84626 -10.69292 -10.66193 -10.55171 -10.10873 -8.88176 -7.87265 -5.20926 1.42681 1.44959 1.53643 1.57716 1.79792 2.47845 2.86376 3.00786 3.30202 3.64482 3.69151 3.73865 3.77672 3.87295 3.96439 3.97947 4.04923 4.07887 4.19826 4.26560 4.27723 4.30031 4.37918 4.42174 4.52540 4.53128 4.62909 4.68129 4.75230 4.76826 4.77081 4.83088 4.84454 5.01745 5.04755 5.05232 5.11801 5.13804 5.19298 5.20087 5.29282 5.41115 5.43292 5.46779 5.56148 5.75267 5.84513 6.10282 6.20832 6.24661 6.59018 7.10676 7.26265 7.78891 8.43463 9.23184 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.001612 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.558647 B =17370.530663 C =18146.993844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.188 3.812 5 N -0.632 5.632 6 C -0.245 4.245 7 H 0.077 0.923 8 C -0.065 4.065 9 N -0.948 5.948 10 Si 0.975 3.025 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.269 1.269 14 C 0.132 3.868 15 C -0.081 4.081 16 H 0.069 0.931 17 C -0.097 4.097 18 C 0.124 3.876 19 N -0.709 5.709 20 C 0.503 3.497 21 O -0.582 6.582 22 C 0.047 3.953 23 O -0.391 6.391 24 C 0.084 3.916 25 C -0.179 4.179 26 C 0.062 3.938 27 O -0.407 6.407 28 C 0.065 3.935 29 C -0.156 4.156 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.011 0.989 34 H -0.003 1.003 35 H 0.247 0.753 36 H 0.025 0.975 37 H 0.029 0.971 38 H 0.100 0.900 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.421 0.579 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.074 0.926 51 H 0.108 0.892 52 H 0.087 0.913 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 15.804 30.028 34.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.101 0.899 4 C 0.063 3.937 5 N -0.358 5.358 6 C -0.375 4.375 7 H 0.095 0.905 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.804 3.196 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.194 1.194 14 C 0.007 3.993 15 C -0.101 4.101 16 H 0.087 0.913 17 C -0.135 4.135 18 C 0.000 4.000 19 N -0.364 5.364 20 C 0.290 3.710 21 O -0.461 6.461 22 C -0.033 4.033 23 O -0.310 6.310 24 C 0.027 3.973 25 C -0.217 4.217 26 C -0.014 4.014 27 O -0.327 6.327 28 C -0.011 4.011 29 C -0.194 4.194 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.016 0.984 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.259 0.741 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.111 0.889 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.092 0.908 49 H 0.123 0.877 50 H 0.092 0.908 51 H 0.126 0.874 52 H 0.106 0.894 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.666 14.628 30.029 33.508 hybrid contribution 0.443 -0.668 -1.657 1.841 sum -2.223 13.960 28.372 31.698 Atomic orbital electron populations 1.21635 0.93182 1.01181 1.02433 1.22359 0.96765 0.98687 0.94166 0.89937 1.21026 0.87944 0.91896 0.92798 1.44833 1.32623 1.51576 1.06738 1.19449 1.04710 1.18836 0.94462 0.90512 1.25648 0.99861 1.02072 0.98269 1.70203 1.31698 1.44093 1.13660 0.85105 0.78197 0.78766 0.77572 1.21492 1.21829 1.19420 1.21848 0.96192 0.97077 0.84162 1.22208 0.95647 0.98090 0.94110 0.91258 1.21589 1.03764 0.97393 0.90797 1.21264 1.00720 0.93452 0.84527 1.45732 1.69562 1.13035 1.08042 1.21025 0.76084 0.88609 0.85302 1.90740 1.50975 1.18779 1.85638 1.22413 1.03672 0.92736 0.84433 1.88063 1.89453 1.35588 1.17903 1.22356 0.96434 0.94724 0.83828 1.22746 0.97379 1.01617 0.99959 1.22696 1.02619 0.91809 0.84294 1.87929 1.29607 1.66609 1.48510 1.22697 0.82962 0.98491 0.96977 1.22319 1.03301 0.99490 0.94242 0.89698 0.92920 0.94282 0.97073 0.98433 0.94412 0.95709 0.95222 0.88110 0.89890 0.93534 0.92536 0.74092 0.86621 0.87327 0.88856 0.92544 0.89014 0.90799 0.87744 0.90786 0.87424 0.89414 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.17 71.98 0.66 -2.90 16 2 C -0.10 -3.43 3.01 -9.61 -0.03 -3.46 16 3 H 0.08 2.54 8.04 -2.39 -0.02 2.52 16 4 C 0.19 9.38 4.98 86.73 0.43 9.82 16 5 N -0.63 -33.54 3.39 -691.99 -2.35 -35.89 16 6 C -0.25 -14.37 10.27 84.03 0.86 -13.51 16 7 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 8 C -0.07 -3.85 5.48 84.86 0.46 -3.39 16 9 N -0.95 -58.46 10.36 21.65 0.22 -58.24 16 10 Si 0.98 47.33 29.56 68.60 2.03 49.36 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 14 C 0.13 5.45 6.19 86.86 0.54 5.99 16 15 C -0.08 -2.53 2.45 -9.40 -0.02 -2.55 16 16 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 17 C -0.10 -1.98 4.84 30.59 0.15 -1.83 16 18 C 0.12 2.85 5.58 86.38 0.48 3.33 16 19 N -0.71 -11.93 5.56 -463.05 -2.57 -14.50 16 20 C 0.50 11.26 7.91 87.66 0.69 11.95 16 21 O -0.58 -20.53 16.50 16.00 0.26 -20.26 16 22 C 0.05 0.61 6.23 71.24 0.44 1.05 16 23 O -0.39 -7.83 9.53 -129.94 -1.24 -9.07 16 24 C 0.08 1.05 2.70 30.71 0.08 1.13 16 25 C -0.18 -2.10 5.76 30.68 0.18 -1.92 16 26 C 0.06 0.59 6.84 72.01 0.49 1.08 16 27 O -0.41 -5.88 10.77 -148.98 -1.60 -7.48 16 28 C 0.07 0.64 6.84 72.02 0.49 1.13 16 29 C -0.16 -2.05 5.79 30.68 0.18 -1.87 16 30 H 0.08 1.71 8.09 -2.39 -0.02 1.70 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.21 8.07 -2.38 -0.02 1.19 16 33 H 0.01 0.62 6.93 -2.39 -0.02 0.61 16 34 H 0.00 -0.15 7.61 -2.39 -0.02 -0.16 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.03 0.99 7.91 -2.39 -0.02 0.97 16 37 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.46 8.08 -2.39 -0.02 1.45 16 39 H 0.08 1.54 7.96 -2.39 -0.02 1.52 16 40 H 0.05 1.33 7.75 -2.38 -0.02 1.31 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.42 3.34 8.47 -92.71 -0.79 2.55 16 43 H 0.12 0.67 8.09 -2.39 -0.02 0.65 16 44 H 0.11 0.77 7.99 -2.39 -0.02 0.75 16 45 H 0.09 0.60 7.79 -2.38 -0.02 0.58 16 46 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.09 0.75 7.99 -2.38 -0.02 0.73 16 48 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -84.75 417.41 0.93 -83.82 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.08 Total: 8.19 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.09 Total: 4.06 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -4.70 Total: -108.62 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.58 Total: -36.81 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Total: -84.75 0.93 -83.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103487897.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.971 kcal (2) G-P(sol) polarization free energy of solvation -84.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds