Wall clock time and date at job start Wed Apr 1 2020 00:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.88541 * 2 1 4 4 C 1.54914 * 111.00210 * 236.12272 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.88127 * 4 2 1 6 6 C 1.36936 * 125.64483 * 204.16378 * 5 4 2 7 7 H 1.08004 * 119.99836 * 179.97438 * 6 5 4 8 8 C 1.38815 * 120.00358 * 359.95842 * 6 5 4 9 9 N 1.31619 * 119.99732 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00198 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46968 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47014 * 119.99939 * 10 8 6 13 13 H 1.48497 * 109.46957 * 239.99998 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09000 * 110.72188 * 96.24097 * 15 14 5 17 17 C 1.52995 * 110.72304 * 219.52316 * 15 14 5 18 18 C 1.52996 * 109.46978 * 293.54583 * 17 15 14 19 19 N 1.46500 * 109.47407 * 180.02562 * 18 17 15 20 20 C 1.34773 * 120.00209 * 180.02562 * 19 18 17 21 21 O 1.21282 * 120.00007 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.99836 * 179.97438 * 20 19 18 23 23 O 1.42912 * 109.46901 * 180.02562 * 22 20 19 24 24 C 1.42895 * 113.99715 * 180.02562 * 23 22 20 25 25 C 1.52995 * 109.46977 * 179.97438 * 24 23 22 26 26 H 1.09005 * 110.33294 * 307.24909 * 25 24 23 27 27 C 1.54484 * 110.37549 * 184.99549 * 25 24 23 28 28 C 1.54508 * 104.06531 * 217.18703 * 27 25 24 29 29 C 1.54484 * 104.06108 * 0.02562 * 28 27 25 30 30 O 1.44419 * 104.80519 * 23.97539 * 29 28 27 31 31 H 1.08997 * 109.47394 * 182.42055 * 1 2 3 32 32 H 1.08994 * 109.47153 * 302.42553 * 1 2 3 33 33 H 1.09004 * 109.47185 * 62.42533 * 1 2 3 34 34 H 1.08999 * 110.37121 * 86.03862 * 4 2 1 35 35 H 1.09003 * 110.36718 * 323.71766 * 4 2 1 36 36 H 0.96996 * 119.99954 * 180.02562 * 9 8 6 37 37 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 38 38 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 39 39 H 1.08999 * 109.47410 * 53.54449 * 17 15 14 40 40 H 1.08997 * 109.47486 * 173.54242 * 17 15 14 41 41 H 1.09003 * 109.47054 * 299.99653 * 18 17 15 42 42 H 1.08997 * 109.47291 * 59.99539 * 18 17 15 43 43 H 0.97007 * 119.99965 * 359.97438 * 19 18 17 44 44 H 1.08996 * 109.46798 * 299.99276 * 22 20 19 45 45 H 1.08993 * 109.47467 * 60.00098 * 22 20 19 46 46 H 1.09006 * 109.47126 * 299.99231 * 24 23 22 47 47 H 1.09000 * 109.47720 * 59.99631 * 24 23 22 48 48 H 1.08993 * 110.50689 * 335.83791 * 27 25 24 49 49 H 1.09001 * 110.50809 * 98.54187 * 27 25 24 50 50 H 1.09001 * 110.50533 * 118.64152 * 28 27 25 51 51 H 1.08994 * 110.51459 * 241.21456 * 28 27 25 52 52 H 1.09005 * 110.37208 * 142.81150 * 29 28 27 53 53 H 1.09005 * 110.36889 * 265.14111 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4274 -1.2420 -0.7742 6 6 4.4646 -1.5637 -1.6085 7 1 5.4136 -1.8729 -1.1959 8 6 4.2962 -1.4927 -2.9846 9 7 3.1397 -1.1157 -3.4874 10 14 5.7112 -1.9308 -4.1226 11 1 6.8945 -2.3197 -3.3141 12 1 5.3128 -3.0656 -4.9937 13 1 6.0510 -0.7558 -4.9648 14 6 3.4683 -1.2733 0.6950 15 6 2.0887 -0.8064 1.2052 16 1 1.4496 -1.6613 1.4260 17 6 2.2414 0.0894 2.4360 18 6 2.7945 -0.7341 3.6008 19 7 2.9402 0.1235 4.7795 20 6 3.4142 -0.3899 5.9320 21 8 3.7196 -1.5620 5.9934 22 6 3.5646 0.4925 7.1443 23 8 4.0822 -0.2766 8.2320 24 6 4.2632 0.4697 9.4371 25 6 4.8178 -0.4492 10.5275 26 1 4.1929 -1.3366 10.6289 27 6 4.9041 0.3043 11.8733 28 6 6.2035 -0.2272 12.5185 29 6 6.7489 -1.2386 11.4859 30 8 6.1803 -0.8219 10.2254 31 1 -0.3634 -1.0267 0.0434 32 1 -0.3633 0.5510 0.8674 33 1 -0.3634 0.4757 -0.9110 34 1 2.1553 -0.1714 -2.0840 35 1 1.4521 -1.6702 -1.4028 36 1 3.0219 -1.0664 -4.4489 37 1 3.6665 -2.2886 1.0388 38 1 4.2451 -0.6007 1.0587 39 1 2.9284 0.9047 2.2091 40 1 1.2693 0.4993 2.7101 41 1 2.1074 -1.5494 3.8278 42 1 3.7666 -1.1440 3.3267 43 1 2.6963 1.0611 4.7303 44 1 4.2514 1.3079 6.9172 45 1 2.5925 0.9019 7.4187 46 1 4.9640 1.2851 9.2577 47 1 3.3053 0.8780 9.7591 48 1 4.9729 1.3791 11.7054 49 1 4.0431 0.0688 12.4988 50 1 6.9148 0.5849 12.6696 51 1 5.9852 -0.7232 13.4642 52 1 7.8371 -1.1904 11.4458 53 1 6.4219 -2.2483 11.7345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103783664.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:16 Heat of formation + Delta-G solvation = -139.803665 kcal Electronic energy + Delta-G solvation = -29114.000492 eV Core-core repulsion = 24984.975892 eV Total energy + Delta-G solvation = -4129.024600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.90840 -40.39276 -39.71801 -38.33586 -36.43542 -35.01202 -33.13659 -32.67163 -32.52879 -31.75975 -29.45883 -28.05802 -27.20160 -26.09042 -25.39274 -23.47927 -22.93341 -22.06199 -21.67954 -21.32180 -20.62774 -18.88060 -18.35749 -17.99761 -17.54788 -17.13582 -17.06387 -16.73555 -16.53680 -16.28056 -16.14723 -15.61417 -15.55508 -15.04268 -14.77769 -14.60829 -14.55583 -14.18664 -13.87191 -13.69508 -13.54666 -13.36855 -13.09517 -12.87176 -12.78251 -12.74884 -12.71396 -12.64732 -12.40127 -12.20415 -12.17675 -12.14576 -11.93763 -11.77525 -11.48543 -11.42655 -11.25365 -11.09717 -10.81318 -10.76341 -10.72723 -10.71693 -10.11379 -8.87670 -7.78101 -5.22484 1.44026 1.45080 1.55676 1.58145 1.81395 2.48090 2.89801 2.96946 3.30258 3.65701 3.70674 3.72571 3.77721 3.90385 3.93542 4.00053 4.08430 4.16528 4.17563 4.28049 4.28530 4.31408 4.37277 4.43840 4.51155 4.53284 4.58108 4.63324 4.73846 4.80494 4.80853 4.84437 4.88448 4.95268 5.02213 5.04015 5.08709 5.14049 5.17051 5.19918 5.30277 5.40672 5.43274 5.46233 5.55619 5.77768 5.85890 5.88947 6.09050 6.32366 6.59128 7.11561 7.26459 7.79258 8.43129 9.23189 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018003 B = 0.001615 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.885081 B =17332.244111 C =18622.335471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 H 0.073 0.927 4 C 0.159 3.841 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.075 0.925 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.270 1.270 12 H -0.292 1.292 13 H -0.287 1.287 14 C 0.133 3.867 15 C -0.080 4.080 16 H 0.076 0.924 17 C -0.097 4.097 18 C 0.124 3.876 19 N -0.710 5.710 20 C 0.502 3.498 21 O -0.582 6.582 22 C 0.048 3.952 23 O -0.400 6.400 24 C 0.063 3.937 25 C 0.064 3.936 26 H 0.065 0.935 27 C -0.140 4.140 28 C -0.150 4.150 29 C 0.030 3.970 30 O -0.401 6.401 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.069 0.931 35 H -0.019 1.019 36 H 0.247 0.753 37 H 0.007 0.993 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.421 0.579 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.068 0.932 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.096 0.904 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 11.377 33.349 35.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.034 3.966 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.093 0.907 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.195 1.195 12 H -0.219 1.219 13 H -0.214 1.214 14 C 0.008 3.992 15 C -0.099 4.099 16 H 0.095 0.905 17 C -0.135 4.135 18 C 0.000 4.000 19 N -0.364 5.364 20 C 0.289 3.711 21 O -0.462 6.462 22 C -0.031 4.031 23 O -0.319 6.319 24 C -0.013 4.013 25 C 0.007 3.993 26 H 0.083 0.917 27 C -0.177 4.177 28 C -0.188 4.188 29 C -0.046 4.046 30 O -0.321 6.321 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.087 0.913 35 H -0.001 1.001 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.259 0.741 44 H 0.125 0.875 45 H 0.138 0.862 46 H 0.086 0.914 47 H 0.116 0.884 48 H 0.110 0.890 49 H 0.117 0.883 50 H 0.102 0.898 51 H 0.113 0.887 52 H 0.114 0.886 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.035 10.334 32.979 34.693 hybrid contribution 0.776 -0.389 -1.129 1.424 sum -2.258 9.945 31.849 33.442 Atomic orbital electron populations 1.21593 0.92868 1.01642 1.02292 1.22522 0.96586 0.98443 0.94375 0.90847 1.21799 0.83492 0.94827 0.96467 1.44852 1.10526 1.78972 1.01134 1.19486 0.91888 1.37428 0.88235 0.90746 1.25618 0.99816 1.02506 0.97987 1.70073 1.23972 1.54885 1.10734 0.84996 0.78569 0.77076 0.78616 1.19501 1.21863 1.21375 1.21572 0.96876 0.96829 0.83962 1.22110 0.94995 0.98333 0.94473 0.90522 1.21614 1.03090 0.97476 0.91343 1.21269 1.00423 0.93723 0.84575 1.45733 1.65955 1.14791 1.09929 1.21054 0.76401 0.88296 0.85320 1.90735 1.50609 1.19818 1.84990 1.22350 1.02681 0.92929 0.85100 1.88033 1.85881 1.37373 1.20628 1.22860 1.01304 0.93778 0.83327 1.23218 0.84100 0.97518 0.94498 0.91699 1.22920 0.99358 1.01497 0.93973 1.22944 0.97193 0.99431 0.99203 1.23627 0.99790 0.98040 0.83169 1.89229 1.25627 1.86146 1.31101 0.93450 0.89872 0.93074 0.91290 1.00060 0.94321 0.97524 0.95722 0.90552 0.87871 0.92182 0.93844 0.74108 0.87530 0.86234 0.91390 0.88404 0.89037 0.88269 0.89790 0.88738 0.88556 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.30 71.98 0.67 -2.84 16 2 C -0.10 -3.53 3.09 -9.31 -0.03 -3.56 16 3 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 4 C 0.16 7.98 5.36 86.86 0.47 8.45 16 5 N -0.63 -33.93 3.39 -691.97 -2.35 -36.28 16 6 C -0.24 -14.22 10.27 84.03 0.86 -13.36 16 7 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 8 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 9 N -0.95 -57.78 10.09 21.65 0.22 -57.56 16 10 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 14 C 0.13 5.74 5.98 86.73 0.52 6.25 16 15 C -0.08 -2.58 2.47 -9.52 -0.02 -2.60 16 16 H 0.08 2.45 8.02 -2.39 -0.02 2.43 16 17 C -0.10 -2.17 4.72 30.59 0.14 -2.03 16 18 C 0.12 3.09 5.52 86.38 0.48 3.56 16 19 N -0.71 -13.51 5.56 -463.07 -2.57 -16.08 16 20 C 0.50 12.47 7.91 87.66 0.69 13.17 16 21 O -0.58 -21.99 16.50 16.00 0.26 -21.73 16 22 C 0.05 0.75 6.42 71.24 0.46 1.21 16 23 O -0.40 -9.24 9.88 -128.36 -1.27 -10.50 16 24 C 0.06 0.88 5.54 71.98 0.40 1.28 16 25 C 0.06 1.02 3.57 31.10 0.11 1.13 16 26 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 27 C -0.14 -1.09 6.63 31.61 0.21 -0.88 16 28 C -0.15 -1.21 7.09 31.61 0.22 -0.98 16 29 C 0.03 0.43 7.63 72.49 0.55 0.98 16 30 O -0.40 -9.02 11.34 -148.94 -1.69 -10.71 16 31 H 0.05 1.35 8.12 -2.39 -0.02 1.33 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 35 H -0.02 -1.02 8.04 -2.39 -0.02 -1.04 16 36 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 38 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 39 H 0.08 1.68 8.06 -2.39 -0.02 1.66 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.35 7.49 -2.39 -0.02 1.34 16 43 H 0.42 4.28 8.47 -92.70 -0.79 3.49 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.09 0.49 7.87 -2.39 -0.02 0.47 16 49 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 52 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 53 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -86.54 420.64 0.91 -85.63 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.08 Total: 11.59 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 6.20 Total: 6.33 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -4.70 Total: -109.92 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -2.69 Total: -42.94 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -86.54 0.91 -85.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103783664.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.178 kcal (2) G-P(sol) polarization free energy of solvation -86.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds