Wall clock time and date at job start Wed Apr 1 2020 00:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00337 * 2 1 4 4 C 1.52997 * 109.47335 * 175.01438 * 3 2 1 5 5 C 1.50703 * 110.45926 * 64.23360 * 4 3 2 6 6 O 1.21279 * 120.00254 * 246.88686 * 5 4 3 7 7 N 1.34780 * 119.99707 * 66.88165 * 5 4 3 8 8 C 1.47487 * 127.03236 * 354.50817 * 7 5 4 9 9 C 1.54011 * 107.07875 * 154.51535 * 8 7 5 10 10 H 1.09001 * 110.32343 * 120.20273 * 9 8 7 11 11 C 1.52995 * 110.32666 * 242.41101 * 9 8 7 12 12 C 1.54615 * 105.04567 * 1.30705 * 9 8 7 13 13 H 1.09003 * 110.73617 * 263.50855 * 12 9 8 14 14 C 1.52998 * 110.73640 * 140.36705 * 12 9 8 15 15 C 1.53008 * 109.46916 * 174.99748 * 14 12 9 16 16 N 1.46496 * 109.47155 * 179.97438 * 15 14 12 17 17 C 1.36934 * 120.00362 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99472 * 0.02562 * 17 16 15 19 19 C 1.38807 * 120.00414 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00100 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00096 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47011 * 89.99888 * 21 19 17 23 23 H 1.48490 * 109.47334 * 210.00239 * 21 19 17 24 24 H 1.48499 * 109.46822 * 330.00496 * 21 19 17 25 25 C 1.48113 * 127.03222 * 174.19226 * 7 5 4 26 26 C 1.54512 * 110.51397 * 186.84081 * 4 3 2 27 27 C 1.54487 * 104.06412 * 118.78052 * 26 4 3 28 28 O 1.44427 * 104.80201 * 23.97907 * 27 26 4 29 29 C 1.44427 * 105.27614 * 319.49126 * 28 27 26 30 30 H 1.08995 * 109.47696 * 184.98999 * 1 2 3 31 31 H 1.09003 * 109.46495 * 304.99097 * 1 2 3 32 32 H 1.08998 * 109.47081 * 64.98208 * 1 2 3 33 33 H 1.09000 * 109.47092 * 55.01377 * 3 2 1 34 34 H 1.09003 * 109.47493 * 295.01242 * 3 2 1 35 35 H 1.08992 * 109.91565 * 273.87521 * 8 7 5 36 36 H 1.09003 * 109.91433 * 35.16079 * 8 7 5 37 37 H 1.09004 * 109.47313 * 63.53064 * 11 9 8 38 38 H 1.08999 * 109.47175 * 183.53185 * 11 9 8 39 39 H 1.09002 * 109.47313 * 303.53343 * 11 9 8 40 40 H 1.08998 * 109.47237 * 294.99390 * 14 12 9 41 41 H 1.08999 * 109.47078 * 55.00025 * 14 12 9 42 42 H 1.08998 * 109.46876 * 299.99864 * 15 14 12 43 43 H 1.09007 * 109.46942 * 59.99907 * 15 14 12 44 44 H 0.97005 * 120.00130 * 0.02562 * 16 15 14 45 45 H 0.97001 * 120.00395 * 179.97438 * 20 19 17 46 46 H 1.09005 * 110.66293 * 337.76936 * 25 7 5 47 47 H 1.08998 * 110.66489 * 100.88723 * 25 7 5 48 48 H 1.08999 * 110.50813 * 237.42492 * 26 4 3 49 49 H 1.08999 * 110.50976 * 0.02562 * 26 4 3 50 50 H 1.09000 * 110.36908 * 142.80622 * 27 26 4 51 51 H 1.08997 * 110.37146 * 265.03978 * 27 26 4 52 52 H 1.09000 * 110.36922 * 281.67903 * 29 28 27 53 53 H 1.09002 * 110.37489 * 159.34396 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5305 1.1867 0.1254 5 6 4.1057 0.4894 -1.0805 6 8 4.6126 -0.6061 -0.9631 7 7 4.0566 1.0832 -2.2894 8 6 3.3832 2.3504 -2.6300 9 6 4.1047 2.9293 -3.8614 10 1 3.4077 3.0371 -4.6925 11 6 4.7391 4.2790 -3.5200 12 6 5.1991 1.8938 -4.2089 13 1 6.1564 2.1841 -3.7761 14 6 5.3215 1.7229 -5.7244 15 6 6.4923 0.7896 -6.0394 16 7 6.6092 0.6254 -7.4904 17 6 7.5925 -0.1720 -8.0123 18 1 8.2816 -0.6803 -7.3541 19 6 7.7035 -0.3272 -9.3872 20 7 8.6483 -1.0940 -9.8887 21 14 6.5112 0.5513 -10.5257 22 1 7.0584 1.8851 -10.8818 23 1 6.3225 -0.2520 -11.7602 24 1 5.2048 0.7194 -9.8399 25 6 4.6732 0.5998 -3.5463 26 6 4.1699 2.5825 0.2998 27 6 4.8629 2.5082 1.6785 28 8 5.1023 1.1006 1.8959 29 6 3.9128 0.4343 1.4192 30 1 -0.3634 -1.0237 0.0894 31 1 -0.3632 0.5894 0.8420 32 1 -0.3633 0.4346 -0.9312 33 1 1.6198 1.8770 0.8420 34 1 1.7612 1.8141 -0.9313 35 1 2.3362 2.1624 -2.8675 36 1 3.4580 3.0467 -1.7946 37 1 5.5056 4.1378 -2.7579 38 1 5.1913 4.7048 -4.4156 39 1 3.9724 4.9559 -3.1430 40 1 4.3995 1.2945 -6.1174 41 1 5.4968 2.6944 -6.1866 42 1 7.4143 1.2179 -5.6464 43 1 6.3170 -0.1819 -5.5771 44 1 5.9900 1.0816 -8.0816 45 1 8.7258 -1.2028 -10.8495 46 1 5.4952 -0.0837 -3.3335 47 1 3.9278 0.1207 -4.1811 48 1 4.9020 2.7680 -0.4861 49 1 3.4030 3.3570 0.2972 50 1 5.8058 3.0549 1.6592 51 1 4.2092 2.9078 2.4538 52 1 3.1126 0.5141 2.1551 53 1 4.1257 -0.6122 1.2009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104456665.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:27 Heat of formation + Delta-G solvation = -137.189688 kcal Electronic energy + Delta-G solvation = -31499.493946 eV Core-core repulsion = 27370.582696 eV Total energy + Delta-G solvation = -4128.911250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.09328 -40.21937 -38.81922 -38.61770 -37.07129 -34.97933 -34.03454 -33.44008 -32.13359 -30.61529 -28.91824 -27.96310 -27.40418 -26.25541 -25.95072 -24.21399 -23.74041 -22.90815 -21.90975 -20.99566 -20.12014 -19.66989 -18.43339 -17.59045 -17.23910 -17.08099 -16.85631 -16.67362 -16.53973 -16.36204 -16.00111 -15.74712 -15.68962 -15.14960 -14.83773 -14.79386 -14.48102 -14.32459 -14.25613 -13.86849 -13.83843 -13.44339 -13.35530 -13.17388 -12.96142 -12.80022 -12.69733 -12.57336 -12.49161 -12.39861 -12.29685 -12.06295 -12.04974 -11.91954 -11.85553 -11.61152 -11.52620 -11.30088 -10.98326 -10.94190 -10.76442 -10.58612 -9.75427 -9.33322 -8.05075 -5.40097 1.36430 1.42342 1.49805 1.52423 1.81569 2.47628 2.58880 2.96986 3.22484 3.25741 3.37349 3.50282 3.58252 3.68386 3.76181 3.89151 3.92542 4.04915 4.19933 4.23274 4.25848 4.32977 4.41156 4.43839 4.46762 4.50418 4.52616 4.57495 4.61332 4.62427 4.65516 4.72951 4.77448 4.81366 4.83990 4.87320 4.88188 4.89646 4.95825 5.03317 5.10862 5.19533 5.27398 5.33380 5.41363 5.55642 5.72269 5.78133 6.15683 6.18777 6.49778 7.05506 7.06180 7.80403 8.02315 9.16844 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.002425 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.502890 B =11541.413560 C =11609.891039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.074 3.926 4 C -0.103 4.103 5 C 0.543 3.457 6 O -0.587 6.587 7 N -0.617 5.617 8 C 0.093 3.907 9 C -0.094 4.094 10 H 0.102 0.898 11 C -0.141 4.141 12 C -0.082 4.082 13 H 0.078 0.922 14 C -0.103 4.103 15 C 0.151 3.849 16 N -0.758 5.758 17 C -0.243 4.243 18 H 0.047 0.953 19 C -0.068 4.068 20 N -0.987 5.987 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.246 1.246 25 C 0.106 3.894 26 C -0.138 4.138 27 C 0.037 3.963 28 O -0.403 6.403 29 C 0.070 3.930 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.018 0.982 43 H 0.012 0.988 44 H 0.369 0.631 45 H 0.259 0.741 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.134 0.866 50 H 0.102 0.898 51 H 0.092 0.908 52 H 0.092 0.908 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.048 18.656 25.555 39.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.339 6.339 3 C -0.002 4.002 4 C -0.107 4.107 5 C 0.332 3.668 6 O -0.467 6.467 7 N -0.350 5.350 8 C -0.028 4.028 9 C -0.113 4.113 10 H 0.121 0.879 11 C -0.198 4.198 12 C -0.102 4.102 13 H 0.096 0.904 14 C -0.141 4.141 15 C 0.025 3.975 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.065 0.935 19 C -0.260 4.260 20 N -0.637 5.637 21 Si 0.791 3.209 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.171 1.171 25 C -0.017 4.017 26 C -0.176 4.176 27 C -0.039 4.039 28 O -0.323 6.323 29 C -0.007 4.007 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.036 0.964 43 H 0.030 0.970 44 H 0.203 0.797 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.099 0.901 49 H 0.152 0.848 50 H 0.120 0.880 51 H 0.110 0.890 52 H 0.110 0.890 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.316 17.636 25.842 38.430 hybrid contribution -0.012 -0.533 -1.307 1.411 sum -22.329 17.102 24.535 37.323 Atomic orbital electron populations 1.22921 0.78916 1.03633 1.01388 1.87958 1.21900 1.28386 1.95686 1.22755 0.88325 0.85529 1.03616 1.22190 0.97007 0.98089 0.93389 1.20387 0.78025 0.84727 0.83633 1.90686 1.47942 1.22601 1.85432 1.48756 1.53747 1.25116 1.07350 1.22739 0.96710 0.84356 0.98982 1.22163 0.96445 0.95018 0.97654 0.87937 1.21857 1.01141 0.94881 1.01949 1.22146 0.99543 0.94225 0.94310 0.90398 1.21631 0.97667 0.99947 0.94817 1.20834 0.96958 0.96833 0.82924 1.42680 1.36729 1.57599 1.03369 1.19039 1.06800 1.20269 0.91315 0.93464 1.25660 1.00836 1.01083 0.98374 1.69914 1.37155 1.44487 1.12132 0.85262 0.79718 0.78004 0.77901 1.19880 1.22222 1.17061 1.22457 0.97209 0.97298 0.84753 1.23192 1.01600 0.93654 0.99107 1.23732 1.02243 0.82132 0.95833 1.89174 1.38935 1.20039 1.84118 1.23286 0.87957 0.97235 0.92235 0.89666 0.91681 0.93119 0.88382 0.90566 0.89782 0.87578 0.92884 0.92308 0.89818 0.90848 0.89810 0.96399 0.97031 0.79737 0.93215 0.93192 0.90953 0.90083 0.84778 0.87992 0.89025 0.89029 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.54 10.11 -148.98 -1.51 -9.05 16 3 C 0.07 0.84 4.45 71.98 0.32 1.16 16 4 C -0.10 -1.79 0.49 -51.91 -0.03 -1.81 16 5 C 0.54 14.78 6.28 87.66 0.55 15.34 16 6 O -0.59 -22.86 15.70 -3.02 -0.05 -22.91 16 7 N -0.62 -13.78 3.15 -810.07 -2.55 -16.33 16 8 C 0.09 1.12 4.70 86.53 0.41 1.52 16 9 C -0.09 -1.20 3.17 -9.90 -0.03 -1.24 16 10 H 0.10 1.11 7.85 -2.39 -0.02 1.09 16 11 C -0.14 -1.35 8.94 71.98 0.64 -0.70 16 12 C -0.08 -1.77 2.56 -9.70 -0.02 -1.80 16 13 H 0.08 1.82 7.79 -2.39 -0.02 1.80 16 14 C -0.10 -2.70 4.71 30.60 0.14 -2.55 16 15 C 0.15 5.89 6.15 86.38 0.53 6.42 16 16 N -0.76 -36.47 5.41 -343.44 -1.86 -38.33 16 17 C -0.24 -14.58 10.47 84.03 0.88 -13.70 16 18 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 20 N -0.99 -65.21 13.97 21.65 0.30 -64.91 16 21 Si 0.97 45.71 27.74 68.60 1.90 47.61 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 24 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 25 C 0.11 2.81 5.91 86.61 0.51 3.32 16 26 C -0.14 -1.37 4.48 31.61 0.14 -1.22 16 27 C 0.04 0.44 7.63 72.49 0.55 0.99 16 28 O -0.40 -9.35 11.65 -148.98 -1.74 -11.08 16 29 C 0.07 1.50 6.27 72.49 0.45 1.96 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.35 8.12 -2.39 -0.02 0.33 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 0.45 8.12 -2.39 -0.02 0.43 16 34 H 0.08 0.61 5.75 -2.39 -0.01 0.60 16 35 H 0.08 0.77 7.50 -2.39 -0.02 0.75 16 36 H 0.11 0.68 4.63 -2.39 -0.01 0.67 16 37 H 0.05 0.57 8.03 -2.39 -0.02 0.55 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.07 1.85 8.00 -2.39 -0.02 1.83 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.01 0.49 7.68 -2.38 -0.02 0.47 16 44 H 0.37 16.33 5.53 -92.70 -0.51 15.81 16 45 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 46 H 0.05 1.68 7.89 -2.38 -0.02 1.66 16 47 H 0.07 1.93 7.94 -2.39 -0.02 1.91 16 48 H 0.08 0.99 6.79 -2.39 -0.02 0.97 16 49 H 0.13 0.13 7.49 -2.39 -0.02 0.11 16 50 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.09 1.45 7.87 -2.39 -0.02 1.44 16 53 H 0.07 2.17 6.82 -2.39 -0.02 2.16 16 Total: -1.00 -88.20 406.48 1.60 -86.60 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.32 Total: 22.87 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 6.77 Total: 5.53 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -4.10 Total: -119.56 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -3.29 Total: -43.04 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.90 Total: 47.61 kcal Total: -88.20 1.60 -86.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104456665.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.589 kcal (2) G-P(sol) polarization free energy of solvation -88.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds