Wall clock time and date at job start Wed Apr 1 2020 00:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 O 1.42905 * 109.47052 * 180.02562 * 8 6 5 10 10 C 1.42896 * 114.00093 * 179.97438 * 9 8 6 11 11 C 1.53173 * 109.54196 * 269.55562 * 10 9 8 12 12 C 1.53098 * 109.16225 * 183.15096 * 11 10 9 13 13 O 1.42902 * 109.41141 * 57.60887 * 12 11 10 14 14 C 1.42902 * 114.10023 * 298.83686 * 13 12 11 15 15 C 1.53097 * 109.41291 * 61.16204 * 14 13 12 16 16 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 17 17 C 1.54328 * 107.27043 * 358.94013 * 16 5 4 18 18 H 1.09000 * 110.71672 * 96.34629 * 17 16 5 19 19 C 1.52992 * 110.72106 * 219.44112 * 17 16 5 20 20 C 1.52997 * 109.47482 * 293.55011 * 19 17 16 21 21 N 1.46505 * 109.47212 * 179.97438 * 20 19 17 22 22 C 1.36936 * 119.99992 * 179.97438 * 21 20 19 23 23 H 1.08006 * 119.99834 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00093 * 180.02562 * 22 21 20 25 25 N 1.31619 * 120.00176 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00265 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46725 * 59.99976 * 26 24 22 28 28 H 1.48498 * 109.47172 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46920 * 300.00189 * 26 24 22 30 30 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 31 31 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 32 32 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 33 33 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 34 34 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 35 35 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 36 36 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 37 37 H 1.09000 * 109.54341 * 29.81815 * 10 9 8 38 38 H 1.09004 * 109.52470 * 303.05170 * 11 10 9 39 39 H 1.08993 * 109.52732 * 63.24684 * 11 10 9 40 40 H 1.08991 * 109.48145 * 297.62772 * 12 11 10 41 41 H 1.09004 * 109.48129 * 177.58763 * 12 11 10 42 42 H 1.08998 * 109.48153 * 301.18308 * 14 13 12 43 43 H 1.08997 * 109.49587 * 181.14778 * 14 13 12 44 44 H 1.09000 * 109.52390 * 182.48799 * 15 14 13 45 45 H 1.09004 * 109.57089 * 62.32775 * 15 14 13 46 46 H 1.08996 * 109.87920 * 239.53158 * 16 5 4 47 47 H 1.08996 * 109.88311 * 118.35693 * 16 5 4 48 48 H 1.09002 * 109.47103 * 173.54764 * 19 17 16 49 49 H 1.08998 * 109.46862 * 53.55576 * 19 17 16 50 50 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 51 51 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 52 52 H 0.96996 * 119.99606 * 0.02562 * 21 20 19 53 53 H 0.97001 * 120.00803 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 8 5.4799 -1.8680 -3.7363 10 6 5.4140 -1.8299 -5.1632 11 6 4.9584 -3.1934 -5.6917 12 6 4.9665 -3.1673 -7.2225 13 8 6.2771 -2.8351 -7.6849 14 6 6.7372 -1.5503 -7.2610 15 6 6.8002 -1.5113 -5.7318 16 6 3.4675 -1.2741 0.6961 17 6 2.0862 -0.8078 1.2023 18 1 1.4479 -1.6632 1.4239 19 6 2.2349 0.0876 2.4338 20 6 2.7848 -0.7361 3.6000 21 7 2.9278 0.1215 4.7791 22 6 3.4053 -0.4004 5.9516 23 1 3.6768 -1.4443 6.0069 24 6 3.5402 0.4120 7.0689 25 7 3.2088 1.6840 7.0016 26 14 4.1923 -0.2999 8.6682 27 1 5.5586 -0.8388 8.4493 28 1 4.2407 0.7660 9.7010 29 1 3.2965 -1.3925 9.1252 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5731 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1560 -0.1720 -2.0836 34 1 1.4526 -1.6704 -1.4043 35 1 3.4638 -2.1576 -3.3913 36 1 4.0093 -0.4633 -3.3704 37 1 4.7066 -1.0615 -5.4752 38 1 5.6389 -3.9675 -5.3371 39 1 3.9496 -3.4033 -5.3364 40 1 4.2559 -2.4209 -7.5770 41 1 4.6842 -4.1485 -7.6042 42 1 6.0497 -0.7826 -7.6161 43 1 7.7304 -1.3663 -7.6705 44 1 7.1086 -0.5182 -5.4051 45 1 7.5182 -2.2508 -5.3770 46 1 4.2426 -0.5996 1.0600 47 1 3.6651 -2.2893 1.0402 48 1 1.2618 0.4969 2.7051 49 1 2.9222 0.9032 2.2091 50 1 3.7579 -1.1454 3.3287 51 1 2.0974 -1.5517 3.8246 52 1 2.6835 1.0589 4.7294 53 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104745217.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:34 Heat of formation + Delta-G solvation = -151.405248 kcal Electronic energy + Delta-G solvation = -29668.604085 eV Core-core repulsion = 25539.076403 eV Total energy + Delta-G solvation = -4129.527683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.38833 -40.54669 -39.31455 -38.13944 -36.88545 -34.71702 -33.57645 -33.45358 -32.11278 -31.88271 -29.92425 -27.90053 -27.21973 -25.83170 -25.10137 -24.56214 -23.95052 -22.06905 -21.45418 -21.09498 -20.46610 -19.17989 -18.49838 -17.81280 -17.47903 -17.29229 -16.99218 -16.68614 -16.52204 -16.13086 -15.81888 -15.65039 -15.42995 -15.30896 -15.06617 -14.71438 -14.52200 -14.35371 -14.08159 -13.96940 -13.72756 -13.59257 -13.28419 -13.20948 -13.05787 -12.85239 -12.65549 -12.52068 -12.43807 -12.29879 -12.26047 -12.16131 -11.93170 -11.91757 -11.66187 -11.56023 -11.38652 -11.20299 -10.95689 -10.94255 -10.68683 -10.58165 -9.76485 -9.02922 -7.98006 -5.27181 1.44675 1.47298 1.48262 1.54361 1.58531 2.53711 2.72109 2.97265 3.33649 3.35350 3.50279 3.63307 3.69345 3.72000 3.82836 3.96081 4.05095 4.08191 4.12056 4.19253 4.23014 4.26268 4.33189 4.38709 4.42160 4.49916 4.51708 4.57782 4.65127 4.66686 4.71376 4.75918 4.77514 4.81831 4.88485 4.92068 5.02772 5.03885 5.09984 5.14050 5.18158 5.21205 5.28883 5.33999 5.42458 5.46607 5.55719 6.07033 6.23729 6.24707 6.44006 7.05004 7.30626 8.06763 8.30300 9.25178 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.001746 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.443510 B =16035.725793 C =17004.021987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.083 0.917 4 C 0.099 3.901 5 N -0.615 5.615 6 C 0.515 3.485 7 O -0.584 6.584 8 C 0.056 3.944 9 O -0.391 6.391 10 C 0.083 3.917 11 C -0.178 4.178 12 C 0.062 3.938 13 O -0.407 6.407 14 C 0.066 3.934 15 C -0.156 4.156 16 C 0.112 3.888 17 C -0.079 4.079 18 H 0.099 0.901 19 C -0.100 4.100 20 C 0.148 3.852 21 N -0.747 5.747 22 C -0.252 4.252 23 H 0.072 0.928 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.975 3.025 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.275 1.275 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.074 0.926 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.053 0.947 48 H 0.075 0.925 49 H 0.054 0.946 50 H 0.009 0.991 51 H 0.023 0.977 52 H 0.374 0.626 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 -5.074 -35.246 36.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.022 4.022 5 N -0.350 5.350 6 C 0.305 3.695 7 O -0.463 6.463 8 C -0.023 4.023 9 O -0.311 6.311 10 C 0.026 3.974 11 C -0.216 4.216 12 C -0.014 4.014 13 O -0.326 6.326 14 C -0.010 4.010 15 C -0.194 4.194 16 C -0.011 4.011 17 C -0.098 4.098 18 H 0.117 0.883 19 C -0.138 4.138 20 C 0.022 3.978 21 N -0.390 5.390 22 C -0.384 4.384 23 H 0.090 0.910 24 C -0.267 4.267 25 N -0.618 5.618 26 Si 0.803 3.197 27 H -0.207 1.207 28 H -0.217 1.217 29 H -0.201 1.201 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.027 0.973 51 H 0.041 0.959 52 H 0.206 0.794 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.514 -5.605 -34.984 35.857 hybrid contribution 0.523 0.208 1.814 1.900 sum -4.991 -5.397 -33.170 33.975 Atomic orbital electron populations 1.21684 0.91688 1.03133 1.02870 1.22415 0.97685 0.98944 0.92255 0.89812 1.22820 0.81110 0.99728 0.98557 1.48550 1.13533 1.66425 1.06474 1.20787 0.82378 0.76642 0.89732 1.90732 1.28263 1.48832 1.78518 1.22330 0.89045 1.03494 0.87428 1.88062 1.34011 1.89146 1.19834 1.22382 0.98336 0.97539 0.79139 1.22739 1.03225 0.97893 0.97713 1.22707 0.84182 1.02772 0.91735 1.87928 1.33876 1.36435 1.74341 1.22682 1.01738 0.85091 0.91505 1.22329 0.96603 1.03304 0.97189 1.21974 0.98675 1.00551 0.79904 1.22185 0.94217 0.99040 0.94373 0.88298 1.21562 1.01423 0.97654 0.93164 1.20869 0.96804 0.93471 0.86670 1.42577 1.78414 1.09802 1.08216 1.19605 1.34422 0.94708 0.89625 0.91011 1.25586 1.03268 0.96223 1.01634 1.69801 1.55901 1.05716 1.30397 0.85201 0.78313 0.77031 0.79158 1.20741 1.21737 1.20126 0.92732 0.90282 0.91310 0.87420 0.88526 0.87112 0.87044 0.88890 0.92476 0.88899 0.90763 0.87563 0.90764 0.87422 0.89640 0.92412 0.93744 0.92813 0.90612 0.92726 0.97295 0.95948 0.79369 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.31 71.98 0.67 -0.80 16 2 C -0.09 -1.39 3.09 -9.40 -0.03 -1.42 16 3 H 0.08 1.36 8.05 -2.39 -0.02 1.34 16 4 C 0.10 1.15 6.16 86.86 0.53 1.69 16 5 N -0.62 -13.59 3.33 -811.77 -2.70 -16.29 16 6 C 0.52 13.57 7.93 87.66 0.69 14.27 16 7 O -0.58 -22.77 16.83 16.00 0.27 -22.50 16 8 C 0.06 0.88 5.24 71.24 0.37 1.25 16 9 O -0.39 -8.49 9.53 -129.95 -1.24 -9.73 16 10 C 0.08 1.12 2.70 30.71 0.08 1.20 16 11 C -0.18 -2.10 5.76 30.68 0.18 -1.92 16 12 C 0.06 0.58 6.84 72.01 0.49 1.07 16 13 O -0.41 -5.91 10.77 -148.98 -1.60 -7.51 16 14 C 0.07 0.69 6.84 72.01 0.49 1.18 16 15 C -0.16 -2.21 5.79 30.69 0.18 -2.03 16 16 C 0.11 3.08 5.61 86.73 0.49 3.56 16 17 C -0.08 -1.76 2.45 -9.61 -0.02 -1.78 16 18 H 0.10 2.02 8.04 -2.39 -0.02 2.01 16 19 C -0.10 -3.04 4.71 30.59 0.14 -2.89 16 20 C 0.15 6.07 6.11 86.38 0.53 6.60 16 21 N -0.75 -39.49 5.60 -343.45 -1.92 -41.41 16 22 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 23 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 25 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 26 Si 0.97 47.40 29.55 68.60 2.03 49.43 16 27 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 29 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.62 8.08 -2.39 -0.02 0.61 16 33 H 0.11 0.60 7.48 -2.39 -0.02 0.58 16 34 H 0.10 0.75 7.99 -2.38 -0.02 0.73 16 35 H 0.11 0.98 7.99 -2.39 -0.02 0.96 16 36 H 0.11 1.00 7.79 -2.39 -0.02 0.98 16 37 H 0.09 0.68 7.79 -2.39 -0.02 0.66 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 0.74 7.99 -2.39 -0.02 0.72 16 40 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.04 1.49 7.76 -2.39 -0.02 1.47 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 50 H 0.01 0.39 7.49 -2.39 -0.02 0.37 16 51 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.37 20.71 7.67 -92.71 -0.71 20.00 16 53 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -83.24 420.03 1.38 -81.86 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.16 Total: 24.02 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 6.11 Total: 2.18 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -4.34 Total: -117.75 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -2.57 Total: -39.74 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -83.24 1.38 -81.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104745217.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.548 kcal (2) G-P(sol) polarization free energy of solvation -83.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds