Wall clock time and date at job start Wed Apr 1 2020 00:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.91380 * 2 1 4 4 C 1.54906 * 111.00696 * 236.09998 * 2 1 3 5 5 N 1.47421 * 104.83247 * 204.91697 * 4 2 1 6 6 C 1.34777 * 125.64582 * 204.09166 * 5 4 2 7 7 O 1.21289 * 120.00045 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00392 * 0.03566 * 6 5 4 9 9 O 1.42894 * 109.47502 * 180.02562 * 8 6 5 10 10 C 1.42902 * 113.99793 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46850 * 179.97438 * 10 9 8 12 12 H 1.08993 * 110.33282 * 307.25441 * 11 10 9 13 13 C 1.54482 * 110.37157 * 184.99691 * 11 10 9 14 14 C 1.54513 * 104.06130 * 217.19156 * 13 11 10 15 15 C 1.54478 * 104.06429 * 0.02562 * 14 13 11 16 16 O 1.44421 * 104.80479 * 23.97652 * 15 14 13 17 17 C 1.47022 * 108.70753 * 24.12375 * 5 4 2 18 18 C 1.54322 * 107.26946 * 358.94323 * 17 5 4 19 19 H 1.09000 * 110.72071 * 96.34341 * 18 17 5 20 20 C 1.52996 * 110.72162 * 219.44525 * 18 17 5 21 21 C 1.52998 * 109.46929 * 293.54686 * 20 18 17 22 22 N 1.46506 * 109.47233 * 180.02562 * 21 20 18 23 23 C 1.36931 * 119.99939 * 179.97438 * 22 21 20 24 24 H 1.08000 * 120.00644 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99715 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99673 * 179.72262 * 25 23 22 27 27 Si 1.86795 * 120.00115 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47274 * 89.99913 * 27 25 23 29 29 H 1.48505 * 109.47015 * 209.99478 * 27 25 23 30 30 H 1.48498 * 109.47362 * 329.99904 * 27 25 23 31 31 H 1.09003 * 109.47431 * 296.09537 * 1 2 3 32 32 H 1.08995 * 109.47801 * 56.10184 * 1 2 3 33 33 H 1.09004 * 109.47256 * 176.10348 * 1 2 3 34 34 H 1.09000 * 110.37060 * 86.07284 * 4 2 1 35 35 H 1.09004 * 110.36304 * 323.75281 * 4 2 1 36 36 H 1.09001 * 109.47096 * 300.00680 * 8 6 5 37 37 H 1.09002 * 109.46644 * 60.00162 * 8 6 5 38 38 H 1.08997 * 109.47337 * 299.99780 * 10 9 8 39 39 H 1.08999 * 109.47308 * 60.00528 * 10 9 8 40 40 H 1.08999 * 110.50938 * 335.83768 * 13 11 10 41 41 H 1.08999 * 110.50560 * 98.54707 * 13 11 10 42 42 H 1.09005 * 110.50466 * 118.64824 * 14 13 11 43 43 H 1.08993 * 110.51013 * 241.35640 * 14 13 11 44 44 H 1.08997 * 110.37421 * 142.81143 * 15 14 13 45 45 H 1.08997 * 110.36794 * 265.03452 * 15 14 13 46 46 H 1.08996 * 109.88449 * 239.52851 * 17 5 4 47 47 H 1.09000 * 109.88435 * 118.35742 * 17 5 4 48 48 H 1.09000 * 109.47441 * 173.54776 * 20 18 17 49 49 H 1.08994 * 109.47235 * 53.54505 * 20 18 17 50 50 H 1.09001 * 109.47671 * 60.00109 * 21 20 18 51 51 H 1.09006 * 109.47297 * 299.99829 * 21 20 18 52 52 H 0.97000 * 119.99307 * 359.97438 * 22 21 20 53 53 H 0.97000 * 120.00043 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8066 -1.2003 5 7 3.4271 -1.2430 -0.7733 6 6 4.4476 -1.5615 -1.5940 7 8 5.5128 -1.9099 -1.1302 8 6 4.2654 -1.4845 -3.0880 9 8 5.4796 -1.8681 -3.7364 10 6 5.4140 -1.8289 -5.1634 11 6 6.7620 -2.2558 -5.7478 12 1 7.5679 -1.6662 -5.3110 13 6 6.7548 -2.1015 -7.2849 14 6 7.5721 -3.3126 -7.7876 15 6 7.9759 -4.0556 -6.4948 16 8 6.9849 -3.6646 -5.5196 17 6 3.4675 -1.2740 0.6961 18 6 2.0862 -0.8079 1.2023 19 1 1.4479 -1.6632 1.4239 20 6 2.2350 0.0877 2.4338 21 6 2.7850 -0.7360 3.5999 22 7 2.9269 0.1213 4.7794 23 6 3.4042 -0.4007 5.9518 24 1 3.6757 -1.4446 6.0073 25 6 3.5392 0.4118 7.0692 26 7 3.9928 -0.0912 8.1977 27 14 3.0689 2.2171 6.9736 28 1 1.6382 2.3759 7.3384 29 1 3.9097 2.9982 7.9162 30 1 3.2850 2.7124 5.5905 31 1 -0.3634 0.4520 0.9229 32 1 -0.3634 0.5731 -0.8529 33 1 -0.3634 -1.0253 -0.0698 34 1 2.1560 -0.1720 -2.0837 35 1 1.4519 -1.6703 -1.4024 36 1 3.4635 -2.1576 -3.3914 37 1 4.0091 -0.4634 -3.3705 38 1 4.6356 -2.5086 -5.5101 39 1 5.1822 -0.8147 -5.4887 40 1 5.7353 -2.1431 -7.6681 41 1 7.2360 -1.1681 -7.5772 42 1 6.9565 -3.9529 -8.4194 43 1 8.4573 -2.9780 -8.3284 44 1 7.9484 -5.1338 -6.6525 45 1 8.9700 -3.7451 -6.1735 46 1 4.2426 -0.5996 1.0599 47 1 3.6651 -2.2893 1.0401 48 1 1.2619 0.4970 2.7052 49 1 2.9223 0.9032 2.2091 50 1 3.7581 -1.1453 3.3287 51 1 2.0976 -1.5517 3.8247 52 1 2.6827 1.0588 4.7297 53 1 4.0868 0.4764 8.9787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105111173.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:38 Heat of formation + Delta-G solvation = -145.201996 kcal Electronic energy + Delta-G solvation = -29374.001589 eV Core-core repulsion = 25244.742899 eV Total energy + Delta-G solvation = -4129.258690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.34335 -40.47605 -39.41066 -38.18710 -37.03619 -34.71381 -33.60252 -33.14082 -32.24999 -31.83675 -29.91288 -28.01757 -27.21320 -26.17206 -25.42214 -23.76997 -22.94855 -22.20617 -21.93846 -21.08086 -20.48440 -19.63382 -18.47284 -17.94114 -17.50520 -17.38485 -16.84815 -16.71904 -16.52570 -16.40596 -15.93447 -15.78036 -15.59311 -15.28157 -14.87316 -14.62332 -14.45419 -14.34085 -14.19255 -13.93237 -13.71253 -13.44775 -13.23331 -13.10448 -12.93692 -12.73351 -12.66332 -12.62731 -12.51565 -12.32124 -12.22248 -12.16542 -12.06619 -11.85582 -11.65705 -11.58495 -11.49541 -11.22128 -10.98084 -10.92506 -10.78037 -10.75166 -9.75521 -9.32587 -8.04983 -5.39514 1.36044 1.41405 1.48696 1.48820 1.60578 2.47272 2.75548 2.94014 3.25884 3.33079 3.50822 3.52138 3.65377 3.73416 3.88151 3.95318 3.98626 4.08272 4.14552 4.19998 4.22843 4.25337 4.32207 4.40682 4.42154 4.47705 4.49220 4.56391 4.57182 4.65690 4.68937 4.77175 4.79410 4.87188 4.88733 4.93320 4.94338 5.02706 5.07331 5.15600 5.16629 5.20080 5.27340 5.32736 5.42616 5.56963 5.72613 5.87216 6.06409 6.18922 6.44812 7.05646 7.06844 7.81169 8.02023 9.16741 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017602 B = 0.001743 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.335953 B =16063.821678 C =17085.199218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.088 0.912 4 C 0.097 3.903 5 N -0.616 5.616 6 C 0.514 3.486 7 O -0.585 6.585 8 C 0.057 3.943 9 O -0.401 6.401 10 C 0.064 3.936 11 C 0.064 3.936 12 H 0.063 0.937 13 C -0.140 4.140 14 C -0.150 4.150 15 C 0.030 3.970 16 O -0.400 6.400 17 C 0.110 3.890 18 C -0.080 4.080 19 H 0.098 0.902 20 C -0.104 4.104 21 C 0.149 3.851 22 N -0.759 5.759 23 C -0.243 4.243 24 H 0.050 0.950 25 C -0.067 4.067 26 N -0.985 5.985 27 Si 0.963 3.037 28 H -0.272 1.272 29 H -0.295 1.295 30 H -0.250 1.250 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.011 0.989 51 H 0.026 0.974 52 H 0.368 0.632 53 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.169 0.683 -41.628 42.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.024 4.024 5 N -0.350 5.350 6 C 0.304 3.696 7 O -0.464 6.464 8 C -0.022 4.022 9 O -0.320 6.320 10 C -0.012 4.012 11 C 0.006 3.994 12 H 0.081 0.919 13 C -0.177 4.177 14 C -0.187 4.187 15 C -0.047 4.047 16 O -0.320 6.320 17 C -0.013 4.013 18 C -0.100 4.100 19 H 0.116 0.884 20 C -0.142 4.142 21 C 0.023 3.977 22 N -0.405 5.405 23 C -0.374 4.374 24 H 0.068 0.932 25 C -0.258 4.258 26 N -0.635 5.635 27 Si 0.790 3.210 28 H -0.198 1.198 29 H -0.222 1.222 30 H -0.175 1.175 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.029 0.971 51 H 0.044 0.956 52 H 0.201 0.799 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.399 0.100 -41.080 41.433 hybrid contribution 0.526 0.617 1.015 1.299 sum -4.873 0.717 -40.065 40.367 Atomic orbital electron populations 1.21690 0.91660 1.03048 1.03023 1.22417 0.97653 0.99040 0.91990 0.89316 1.22837 0.81036 0.99703 0.98796 1.48538 1.13509 1.66486 1.06470 1.20818 0.82418 0.76607 0.89805 1.90740 1.28415 1.48743 1.78541 1.22275 0.88738 1.03724 0.87421 1.88035 1.34184 1.89575 1.20191 1.22876 0.96941 1.02221 0.79180 1.23212 0.96930 0.82986 0.96224 0.91933 1.22920 1.02878 1.00117 0.91796 1.22946 1.01429 0.96907 0.97442 1.23625 0.91899 1.01173 0.87960 1.89225 1.60846 1.24466 1.57496 1.22004 0.98907 1.00505 0.79925 1.22196 0.94071 0.99163 0.94539 0.88409 1.21642 1.02044 0.97775 0.92789 1.20866 0.97250 0.93500 0.86059 1.42704 1.79682 1.09284 1.08819 1.19058 1.34556 0.95061 0.88719 0.93204 1.25628 1.01770 1.03389 0.95056 1.69910 1.54068 1.37280 1.02260 0.85288 0.78010 0.79536 0.78211 1.19760 1.22207 1.17490 0.92334 0.90316 0.91603 0.87293 0.88870 0.87311 0.86616 0.91060 0.88463 0.88860 0.88372 0.89608 0.88811 0.88438 0.92374 0.93441 0.93243 0.89616 0.91880 0.97092 0.95598 0.79882 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.31 71.98 0.67 -0.59 16 2 C -0.09 -1.22 3.09 -9.40 -0.03 -1.24 16 3 H 0.09 1.21 8.05 -2.39 -0.02 1.19 16 4 C 0.10 1.11 6.16 86.85 0.54 1.64 16 5 N -0.62 -13.76 3.33 -811.80 -2.70 -16.46 16 6 C 0.51 14.13 7.93 87.66 0.69 14.82 16 7 O -0.58 -23.76 16.83 15.98 0.27 -23.49 16 8 C 0.06 0.97 5.42 71.24 0.39 1.36 16 9 O -0.40 -9.58 9.88 -128.36 -1.27 -10.85 16 10 C 0.06 0.90 5.54 71.98 0.40 1.29 16 11 C 0.06 1.03 3.57 31.10 0.11 1.14 16 12 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 13 C -0.14 -1.08 6.63 31.61 0.21 -0.87 16 14 C -0.15 -1.18 7.09 31.61 0.22 -0.95 16 15 C 0.03 0.42 7.63 72.48 0.55 0.97 16 16 O -0.40 -8.96 11.34 -148.94 -1.69 -10.65 16 17 C 0.11 2.99 5.61 86.73 0.49 3.47 16 18 C -0.08 -1.68 2.45 -9.61 -0.02 -1.71 16 19 H 0.10 1.92 8.04 -2.39 -0.02 1.90 16 20 C -0.10 -2.82 4.71 30.59 0.14 -2.68 16 21 C 0.15 5.83 6.11 86.38 0.53 6.36 16 22 N -0.76 -36.89 5.41 -343.44 -1.86 -38.74 16 23 C -0.24 -14.60 10.47 84.04 0.88 -13.72 16 24 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 25 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 26 N -0.98 -65.18 13.97 21.65 0.30 -64.88 16 27 Si 0.96 46.30 27.74 68.60 1.90 48.20 16 28 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 29 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 30 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.55 8.07 -2.38 -0.02 0.53 16 34 H 0.11 0.56 7.48 -2.39 -0.02 0.55 16 35 H 0.09 0.76 7.98 -2.39 -0.02 0.74 16 36 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 1.04 7.85 -2.39 -0.02 1.02 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.46 7.87 -2.39 -0.02 0.44 16 41 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.05 1.54 7.76 -2.39 -0.02 1.52 16 47 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.06 1.75 8.06 -2.39 -0.02 1.73 16 50 H 0.01 0.47 7.49 -2.39 -0.02 0.45 16 51 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 52 H 0.37 16.62 5.53 -92.71 -0.51 16.10 16 53 H 0.26 16.20 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -90.74 420.99 1.49 -89.24 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.30 Total: 21.97 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.24 Total: 5.66 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -4.25 Total: -120.09 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -2.69 Total: -44.99 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.20 kcal Total: -90.74 1.49 -89.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105111173.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.958 kcal (2) G-P(sol) polarization free energy of solvation -90.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds