Wall clock time and date at job start Wed Apr 1 2020 00:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.29225 * 2 1 4 4 C 1.54005 * 110.32732 * 237.86090 * 2 1 3 5 5 N 1.47477 * 107.08996 * 242.31310 * 4 2 1 6 6 C 1.34784 * 127.03550 * 154.51537 * 5 4 2 7 7 O 1.21276 * 120.00051 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99728 * 0.02884 * 6 5 4 9 9 O 1.42899 * 109.46785 * 179.97438 * 8 6 5 10 10 C 1.42905 * 113.99778 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.87243 * 53.99740 * 11 10 9 13 13 C 1.54100 * 109.87645 * 175.00264 * 11 10 9 14 14 C 1.54806 * 104.18981 * 121.45668 * 13 11 10 15 15 C 1.54993 * 102.09292 * 20.87837 * 14 13 11 16 16 O 1.43740 * 109.88305 * 292.83317 * 11 10 9 17 17 C 1.48117 * 105.93133 * 334.78218 * 5 4 2 18 18 C 1.54593 * 103.42207 * 39.02161 * 17 5 4 19 19 H 1.08997 * 110.57592 * 81.17361 * 18 17 5 20 20 C 1.53008 * 110.83340 * 204.44761 * 18 17 5 21 21 C 1.52999 * 109.46644 * 288.56183 * 20 18 17 22 22 N 1.46507 * 109.46901 * 180.02562 * 21 20 18 23 23 C 1.36930 * 120.00124 * 179.97438 * 22 21 20 24 24 H 1.08001 * 120.00436 * 0.02562 * 23 22 21 25 25 C 1.38817 * 120.00132 * 179.97438 * 23 22 21 26 26 N 1.31618 * 119.99842 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99949 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47127 * 90.00489 * 27 25 23 29 29 H 1.48510 * 109.46976 * 210.00294 * 27 25 23 30 30 H 1.48493 * 109.47282 * 330.00043 * 27 25 23 31 31 H 1.09000 * 109.47309 * 180.67732 * 1 2 3 32 32 H 1.08997 * 109.47204 * 300.68374 * 1 2 3 33 33 H 1.09009 * 109.46875 * 60.67765 * 1 2 3 34 34 H 1.09008 * 109.90816 * 122.95215 * 4 2 1 35 35 H 1.09003 * 109.91455 * 1.68191 * 4 2 1 36 36 H 1.08997 * 109.47198 * 59.99898 * 8 6 5 37 37 H 1.08997 * 109.47040 * 299.99932 * 8 6 5 38 38 H 1.09000 * 109.47187 * 300.00233 * 10 9 8 39 39 H 1.09001 * 109.46558 * 60.00281 * 10 9 8 40 40 H 1.09002 * 110.49208 * 240.13435 * 13 11 10 41 41 H 1.09003 * 110.49045 * 2.77798 * 13 11 10 42 42 H 1.09001 * 110.90996 * 139.08028 * 14 13 11 43 43 H 1.09008 * 110.90777 * 262.68074 * 14 13 11 44 44 H 1.08997 * 110.61713 * 81.47900 * 15 14 13 45 45 H 1.08998 * 110.61707 * 204.47716 * 15 14 13 46 46 H 1.08999 * 110.66072 * 157.50344 * 17 5 4 47 47 H 1.08997 * 110.66128 * 280.61971 * 17 5 4 48 48 H 1.08997 * 109.46897 * 48.55628 * 20 18 17 49 49 H 1.09001 * 109.46796 * 168.56415 * 20 18 17 50 50 H 1.08998 * 109.47346 * 299.99796 * 21 20 18 51 51 H 1.08996 * 109.47584 * 60.00157 * 21 20 18 52 52 H 0.97000 * 119.99405 * 359.97438 * 22 21 20 53 53 H 0.96999 * 119.99801 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 -1.2228 5 7 2.8297 -1.9204 -0.7103 6 6 3.0644 -3.0861 -1.3449 7 8 3.7138 -3.9532 -0.7998 8 6 2.5198 -3.3119 -2.7318 9 8 2.9002 -4.6119 -3.1870 10 6 2.4311 -4.9285 -4.4992 11 6 2.8954 -6.3355 -4.8810 12 1 2.5881 -7.0477 -4.1150 13 6 2.2913 -6.7355 -6.2410 14 6 3.5230 -7.0287 -7.1318 15 6 4.6289 -7.2957 -6.0792 16 8 4.3253 -6.3559 -5.0260 17 6 3.2815 -1.5369 0.6472 18 6 2.0692 -0.7721 1.2262 19 1 1.3209 -1.4693 1.6031 20 6 2.5113 0.1967 2.3249 21 6 2.9216 -0.5952 3.5681 22 7 3.3443 0.3325 4.6204 23 6 3.7576 -0.1504 5.8333 24 1 3.7725 -1.2150 6.0141 25 6 4.1587 0.7285 6.8301 26 7 4.1411 2.0260 6.6096 27 14 4.7233 0.0698 8.4844 28 1 6.1888 -0.1674 8.4487 29 1 4.4077 1.0599 9.5453 30 1 4.0221 -1.2067 8.7743 31 1 -0.3634 -1.0276 0.0121 32 1 -0.3633 0.5244 0.8838 33 1 -0.3633 0.5033 -0.8961 34 1 2.7167 -0.1221 -1.8111 35 1 1.2333 -1.1173 -1.8350 36 1 2.9234 -2.5581 -3.4078 37 1 1.4326 -3.2371 -2.7118 38 1 1.3420 -4.8879 -4.5154 39 1 2.8323 -4.2080 -5.2120 40 1 1.6746 -7.6283 -6.1369 41 1 1.7074 -5.9138 -6.6557 42 1 3.3544 -7.9097 -7.7510 43 1 3.7724 -6.1643 -7.7474 44 1 4.5678 -8.3192 -5.7096 45 1 5.6147 -7.0963 -6.4992 46 1 3.4979 -2.4224 1.2449 47 1 4.1540 -0.8859 0.5925 48 1 3.3590 0.7838 1.9720 49 1 1.6861 0.8635 2.5748 50 1 2.0738 -1.1824 3.9211 51 1 3.7467 -1.2621 3.3183 52 1 3.3313 1.2886 4.4579 53 1 4.4209 2.6401 7.3063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105111174.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:42 Heat of formation + Delta-G solvation = -146.025750 kcal Electronic energy + Delta-G solvation = -29353.573375 eV Core-core repulsion = 25224.278965 eV Total energy + Delta-G solvation = -4129.294410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.30694 -40.50399 -39.39139 -38.14926 -36.87947 -34.64928 -33.44137 -33.17693 -32.03593 -31.69130 -29.77832 -27.91233 -27.19882 -26.13490 -25.51349 -24.00494 -23.00782 -22.17540 -21.94701 -21.05314 -20.39048 -19.18223 -18.50282 -17.80044 -17.63007 -17.17782 -16.83790 -16.66023 -16.62430 -16.39422 -15.83540 -15.79512 -15.31014 -15.22336 -14.94126 -14.59136 -14.52736 -14.34345 -14.22399 -13.83005 -13.56967 -13.22409 -13.13077 -13.05412 -12.89361 -12.79881 -12.66753 -12.56637 -12.39337 -12.30912 -12.28968 -12.13172 -12.08028 -11.90927 -11.58726 -11.56734 -11.51677 -11.26888 -10.94302 -10.89969 -10.73985 -10.67435 -9.76449 -9.02059 -7.97708 -5.26476 1.45335 1.47331 1.49880 1.55828 1.60279 2.54122 2.76322 2.95235 3.35388 3.36574 3.56457 3.61850 3.71283 3.77450 3.90689 3.96050 4.06261 4.12155 4.16239 4.22071 4.23518 4.28649 4.31892 4.42281 4.46263 4.47031 4.50595 4.59861 4.62967 4.67689 4.70376 4.79448 4.79950 4.90000 4.91332 4.91943 4.95788 5.01602 5.06657 5.10110 5.19224 5.20721 5.30480 5.36572 5.42243 5.47454 5.56437 5.92100 6.11527 6.25453 6.49021 7.07270 7.31570 8.07333 8.31813 9.25642 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.001676 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.552995 B =16699.613515 C =17881.138712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.099 0.901 4 C 0.100 3.900 5 N -0.619 5.619 6 C 0.520 3.480 7 O -0.584 6.584 8 C 0.057 3.943 9 O -0.399 6.399 10 C 0.059 3.941 11 C 0.067 3.933 12 H 0.060 0.940 13 C -0.141 4.141 14 C -0.149 4.149 15 C 0.030 3.970 16 O -0.402 6.402 17 C 0.107 3.893 18 C -0.082 4.082 19 H 0.078 0.922 20 C -0.098 4.098 21 C 0.148 3.852 22 N -0.746 5.746 23 C -0.252 4.252 24 H 0.070 0.930 25 C -0.072 4.072 26 N -0.966 5.966 27 Si 0.973 3.027 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.272 1.272 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.014 0.986 51 H 0.011 0.989 52 H 0.376 0.624 53 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.034 -11.400 -35.556 38.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.117 0.883 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.310 3.690 7 O -0.463 6.463 8 C -0.022 4.022 9 O -0.318 6.318 10 C -0.017 4.017 11 C 0.009 3.991 12 H 0.078 0.922 13 C -0.179 4.179 14 C -0.186 4.186 15 C -0.046 4.046 16 O -0.322 6.322 17 C -0.016 4.016 18 C -0.102 4.102 19 H 0.096 0.904 20 C -0.136 4.136 21 C 0.022 3.978 22 N -0.389 5.389 23 C -0.384 4.384 24 H 0.088 0.912 25 C -0.265 4.265 26 N -0.617 5.617 27 Si 0.802 3.198 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.197 1.197 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.032 0.968 51 H 0.029 0.971 52 H 0.208 0.792 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.395 -12.106 -35.001 38.467 hybrid contribution 0.589 0.016 1.384 1.505 sum -9.806 -12.090 -33.616 37.046 Atomic orbital electron populations 1.21833 0.92709 1.02145 1.03009 1.22157 0.97469 0.99859 0.92016 0.88287 1.22578 0.96353 0.86306 0.96901 1.48833 1.53775 1.15200 1.17528 1.20720 0.79822 0.80117 0.88366 1.90729 1.42125 1.44512 1.68968 1.22257 1.01528 0.87135 0.91293 1.88042 1.77708 1.32485 1.33586 1.23039 0.99589 0.95948 0.83091 1.22947 0.81529 0.96208 0.98439 0.92154 1.22937 0.98730 1.03907 0.92279 1.23139 0.93821 1.03808 0.97846 1.23809 1.00444 0.93106 0.87208 1.88996 1.22437 1.63553 1.57243 1.22465 0.97710 0.98700 0.82690 1.22135 0.96271 0.96811 0.94960 0.90375 1.21550 1.01396 0.97539 0.93118 1.20856 0.95776 0.92630 0.88569 1.42559 1.79166 1.05479 1.11659 1.19632 1.35135 0.92344 0.91273 0.91207 1.25554 1.03176 0.95645 1.02124 1.69802 1.55534 1.01733 1.34626 0.85148 0.77940 0.77273 0.79449 1.21419 1.21626 1.19704 0.92722 0.92763 0.89996 0.89149 0.87624 0.87486 0.86798 0.88747 0.91259 0.88771 0.88206 0.88099 0.89933 0.91919 0.88430 0.92737 0.90751 0.91495 0.90866 0.96774 0.97076 0.79224 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.90 71.98 0.64 -1.12 16 2 C -0.10 -1.49 3.17 -9.90 -0.03 -1.52 16 3 H 0.10 1.42 7.85 -2.39 -0.02 1.40 16 4 C 0.10 1.31 6.42 86.53 0.56 1.87 16 5 N -0.62 -14.28 3.29 -810.09 -2.67 -16.95 16 6 C 0.52 14.47 7.97 87.66 0.70 15.17 16 7 O -0.58 -23.59 16.71 16.02 0.27 -23.32 16 8 C 0.06 1.00 5.50 71.24 0.39 1.39 16 9 O -0.40 -9.71 9.87 -126.82 -1.25 -10.96 16 10 C 0.06 0.85 5.39 71.98 0.39 1.24 16 11 C 0.07 1.07 3.71 30.97 0.11 1.19 16 12 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 13 C -0.14 -1.05 6.64 31.58 0.21 -0.84 16 14 C -0.15 -1.09 7.15 31.89 0.23 -0.86 16 15 C 0.03 0.41 7.72 72.66 0.56 0.97 16 16 O -0.40 -9.02 11.18 -147.43 -1.65 -10.67 16 17 C 0.11 2.96 5.92 86.61 0.51 3.48 16 18 C -0.08 -1.96 2.58 -9.70 -0.02 -1.99 16 19 H 0.08 1.99 7.86 -2.39 -0.02 1.97 16 20 C -0.10 -2.97 4.70 30.60 0.14 -2.83 16 21 C 0.15 6.18 6.15 86.38 0.53 6.71 16 22 N -0.75 -39.46 5.60 -343.45 -1.92 -41.39 16 23 C -0.25 -14.77 9.99 84.04 0.84 -13.93 16 24 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 25 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 26 N -0.97 -60.07 13.06 21.65 0.28 -59.79 16 27 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 29 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 30 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.11 0.75 7.08 -2.39 -0.02 0.73 16 36 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.11 1.13 7.91 -2.39 -0.02 1.12 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.10 0.37 7.70 -2.39 -0.02 0.35 16 42 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 45 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 47 H 0.07 2.07 7.93 -2.39 -0.02 2.05 16 48 H 0.07 2.03 7.99 -2.39 -0.02 2.01 16 49 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.01 0.49 7.67 -2.39 -0.02 0.47 16 52 H 0.38 20.64 7.67 -92.71 -0.71 19.93 16 53 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -85.36 423.75 1.47 -83.89 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.16 Total: 24.49 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.23 Total: 5.09 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.31 Total: -118.13 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -2.63 Total: -44.94 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -85.36 1.47 -83.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105111174.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.139 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds