Wall clock time and date at job start Wed Apr 1 2020 00:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.65884 * 2 1 4 4 C 1.54596 * 110.83495 * 236.75445 * 2 1 3 5 5 N 1.48121 * 103.42395 * 204.44613 * 4 2 1 6 6 C 1.34770 * 127.03384 * 219.28426 * 5 4 2 7 7 O 1.21285 * 120.00155 * 179.68296 * 6 5 4 8 8 C 1.50705 * 120.00230 * 359.68704 * 6 5 4 9 9 C 1.52990 * 109.47310 * 179.97438 * 8 6 5 10 10 O 1.42896 * 109.47400 * 179.97438 * 9 8 6 11 11 C 1.42902 * 114.00520 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47316 * 180.02562 * 11 10 9 13 13 H 1.08997 * 110.67587 * 303.48791 * 12 11 10 14 14 C 1.55000 * 110.61526 * 180.52197 * 12 11 10 15 15 C 1.54818 * 102.09030 * 204.47771 * 14 12 11 16 16 C 1.54097 * 104.18808 * 20.87976 * 15 14 12 17 17 O 1.43745 * 107.29442 * 2.03270 * 16 15 14 18 18 C 1.47488 * 105.92725 * 39.02382 * 5 4 2 19 19 C 1.53999 * 107.08582 * 334.77895 * 18 5 4 20 20 H 1.08999 * 110.32767 * 120.30859 * 19 18 5 21 21 C 1.53006 * 110.32305 * 242.41538 * 19 18 5 22 22 N 1.46504 * 109.47027 * 293.54340 * 21 19 18 23 23 C 1.36933 * 119.99563 * 180.02562 * 22 21 19 24 24 H 1.07999 * 120.00606 * 0.02562 * 23 22 21 25 25 C 1.38815 * 120.00051 * 180.02562 * 23 22 21 26 26 N 1.31627 * 119.99727 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 120.00509 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47092 * 60.00009 * 27 25 23 29 29 H 1.48501 * 109.47512 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.46942 * 300.00222 * 27 25 23 31 31 H 1.09003 * 109.47516 * 296.81053 * 1 2 3 32 32 H 1.09009 * 109.47180 * 56.80934 * 1 2 3 33 33 H 1.08994 * 109.47249 * 176.80724 * 1 2 3 34 34 H 1.08998 * 110.61772 * 85.92954 * 4 2 1 35 35 H 1.09004 * 110.54697 * 322.93039 * 4 2 1 36 36 H 1.09002 * 109.46723 * 59.99429 * 8 6 5 37 37 H 1.08995 * 109.46570 * 300.00079 * 8 6 5 38 38 H 1.09005 * 109.47088 * 59.99805 * 9 8 6 39 39 H 1.09005 * 109.47503 * 300.00290 * 9 8 6 40 40 H 1.09001 * 109.47263 * 59.99650 * 11 10 9 41 41 H 1.09000 * 109.46943 * 300.00169 * 11 10 9 42 42 H 1.08996 * 110.90766 * 86.28222 * 14 12 11 43 43 H 1.09001 * 110.94010 * 322.68241 * 14 12 11 44 44 H 1.09004 * 110.48564 * 262.20686 * 15 14 12 45 45 H 1.08989 * 110.60109 * 139.61789 * 15 14 12 46 46 H 1.08998 * 109.88273 * 242.60534 * 16 15 14 47 47 H 1.08998 * 110.00322 * 121.52715 * 16 15 14 48 48 H 1.09004 * 109.91383 * 94.14575 * 18 5 4 49 49 H 1.09005 * 109.90753 * 215.22350 * 18 5 4 50 50 H 1.08999 * 109.47463 * 53.54961 * 21 19 18 51 51 H 1.09009 * 109.46840 * 173.55084 * 21 19 18 52 52 H 0.96996 * 120.00301 * 0.02562 * 22 21 19 53 53 H 0.97000 * 120.00166 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0798 -0.7921 -1.2084 5 7 3.4279 -1.2112 -0.7602 6 6 4.5538 -1.2497 -1.4999 7 8 5.5971 -1.6112 -0.9982 8 6 4.5164 -0.8435 -2.9507 9 6 5.9159 -0.9774 -3.5541 10 8 5.8804 -0.5929 -4.9298 11 6 7.1440 -0.6824 -5.5913 12 6 6.9878 -0.2485 -7.0502 13 1 6.2282 -0.8487 -7.5510 14 6 8.3423 -0.3482 -7.7971 15 6 8.1552 0.6731 -8.9455 16 6 7.0250 1.5960 -8.4499 17 8 6.6612 1.1555 -7.1308 18 6 3.2874 -1.5717 0.6631 19 6 2.0774 -0.7916 1.2100 20 1 1.3217 -1.4806 1.5871 21 6 2.5199 0.1679 2.3166 22 7 2.9885 -0.6018 3.4718 23 6 3.4367 0.0476 4.5909 24 1 3.4443 1.1271 4.6223 25 6 3.8812 -0.6815 5.6853 26 7 3.8724 -1.9972 5.6470 27 14 4.4919 0.2042 7.2123 28 1 3.4023 1.0496 7.7632 29 1 4.9077 -0.7936 8.2305 30 1 5.6516 1.0609 6.8570 31 1 -0.3634 0.4635 0.9172 32 1 -0.3634 0.5626 -0.8601 33 1 -0.3633 -1.0260 -0.0572 34 1 2.1487 -0.1519 -2.0878 35 1 1.4547 -1.6615 -1.4124 36 1 4.1846 0.1918 -3.0297 37 1 3.8241 -1.4891 -3.4910 38 1 6.2481 -2.0126 -3.4750 39 1 6.6080 -0.3316 -3.0136 40 1 7.5014 -1.7115 -5.5542 41 1 7.8617 -0.0304 -5.0935 42 1 8.4962 -1.3527 -8.1912 43 1 9.1677 -0.0562 -7.1477 44 1 7.8582 0.1652 -9.8631 45 1 9.0706 1.2427 -9.1051 46 1 6.1656 1.5203 -9.1161 47 1 7.3752 2.6275 -8.4128 48 1 3.1125 -2.6433 0.7591 49 1 4.1896 -1.2927 1.2075 50 1 3.3286 0.7992 1.9484 51 1 1.6777 0.7928 2.6139 52 1 2.9813 -1.5713 3.4438 53 1 4.1833 -2.5068 6.4115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106360525.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:03 Heat of formation + Delta-G solvation = -148.254789 kcal Electronic energy + Delta-G solvation = -29422.479506 eV Core-core repulsion = 25293.088437 eV Total energy + Delta-G solvation = -4129.391069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.29626 -40.47124 -39.36991 -38.49584 -36.46066 -34.26265 -33.31478 -33.08154 -32.92607 -31.28140 -30.42232 -27.50523 -27.16687 -26.33125 -25.25790 -24.12080 -22.65530 -22.44895 -22.10825 -20.99674 -20.24202 -19.20170 -18.42820 -17.91354 -17.55639 -17.05671 -16.89647 -16.85618 -16.66022 -16.27666 -15.99706 -15.64551 -15.35200 -15.21516 -14.94936 -14.88039 -14.46006 -14.23239 -13.97528 -13.82327 -13.58338 -13.35700 -13.19071 -13.11093 -12.87198 -12.73792 -12.66862 -12.56272 -12.49105 -12.27903 -12.20893 -12.16079 -12.12269 -11.95640 -11.83756 -11.55791 -11.48884 -11.36856 -11.02625 -10.94619 -10.68649 -10.62187 -9.76304 -9.02619 -7.97183 -5.26305 1.44269 1.48151 1.52617 1.54122 1.75841 2.53917 2.61128 2.89430 3.35395 3.43410 3.55546 3.62986 3.73180 3.77135 3.82658 3.98626 3.99331 4.09700 4.12772 4.19422 4.25345 4.31803 4.37699 4.44007 4.46121 4.51165 4.52976 4.56788 4.58284 4.66790 4.74580 4.75312 4.81715 4.83665 4.90921 4.91340 4.93904 4.94063 5.02344 5.06766 5.11754 5.19958 5.22489 5.27466 5.39109 5.45809 5.57952 5.95204 6.12101 6.24707 6.51677 7.05375 7.30973 8.06504 8.29782 9.26006 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.001788 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.005098 B =15660.134187 C =16655.226367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.081 0.919 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.526 3.474 7 O -0.595 6.595 8 C -0.118 4.118 9 C 0.081 3.919 10 O -0.394 6.394 11 C 0.063 3.937 12 C 0.075 3.925 13 H 0.081 0.919 14 C -0.145 4.145 15 C -0.150 4.150 16 C 0.035 3.965 17 O -0.400 6.400 18 C 0.115 3.885 19 C -0.092 4.092 20 H 0.091 0.909 21 C 0.163 3.837 22 N -0.744 5.744 23 C -0.250 4.250 24 H 0.074 0.926 25 C -0.075 4.075 26 N -0.968 5.968 27 Si 0.975 3.025 28 H -0.274 1.274 29 H -0.294 1.294 30 H -0.282 1.282 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.040 0.960 50 H 0.005 0.995 51 H 0.030 0.970 52 H 0.374 0.626 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 3.515 -34.044 34.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.100 0.900 4 C -0.018 4.018 5 N -0.351 5.351 6 C 0.316 3.684 7 O -0.476 6.476 8 C -0.158 4.158 9 C 0.004 3.996 10 O -0.313 6.313 11 C -0.014 4.014 12 C 0.018 3.982 13 H 0.099 0.901 14 C -0.183 4.183 15 C -0.188 4.188 16 C -0.042 4.042 17 O -0.320 6.320 18 C -0.008 4.008 19 C -0.112 4.112 20 H 0.109 0.891 21 C 0.037 3.963 22 N -0.387 5.387 23 C -0.382 4.382 24 H 0.092 0.908 25 C -0.267 4.267 26 N -0.619 5.619 27 Si 0.803 3.197 28 H -0.199 1.199 29 H -0.220 1.220 30 H -0.208 1.208 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.023 0.977 51 H 0.048 0.952 52 H 0.206 0.794 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.121 3.667 -33.678 33.877 hybrid contribution 1.020 -0.277 1.571 1.894 sum 1.140 3.390 -32.107 32.305 Atomic orbital electron populations 1.21706 0.91592 1.03032 1.02831 1.22231 0.97757 0.99034 0.92178 0.90043 1.22916 0.80859 0.99949 0.98052 1.48919 1.09818 1.65310 1.11049 1.20757 0.81537 0.76904 0.89177 1.90722 1.31793 1.50355 1.74753 1.21356 0.99112 1.06067 0.89231 1.22016 0.96484 0.99506 0.81580 1.87809 1.31800 1.88792 1.22915 1.22721 0.85682 1.01165 0.91801 1.23283 0.97351 0.83253 0.94348 0.90077 1.23134 0.96135 1.01721 0.97314 1.22936 0.99588 0.97239 0.99037 1.23355 0.97498 0.99570 0.83758 1.88954 1.85387 1.24483 1.33139 1.21920 0.98625 0.98790 0.81478 1.22269 0.96024 0.97463 0.95435 0.89121 1.20831 0.95525 0.93379 0.86589 1.42562 1.77133 1.05546 1.13466 1.19596 1.33862 0.91644 0.93089 0.90848 1.25593 1.03163 0.96274 1.01716 1.69814 1.54712 1.05620 1.31706 0.85197 0.78308 0.77124 0.79036 1.19939 1.21961 1.20813 0.92889 0.89942 0.91505 0.86866 0.88395 0.86293 0.85391 0.92750 0.93979 0.89925 0.92976 0.87874 0.90228 0.89027 0.89290 0.91746 0.89439 0.92048 0.94157 0.97660 0.95189 0.79413 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.16 71.98 0.66 -1.47 16 2 C -0.09 -1.95 3.19 -9.70 -0.03 -1.98 16 3 H 0.08 1.80 7.86 -2.38 -0.02 1.79 16 4 C 0.10 1.83 6.38 86.61 0.55 2.38 16 5 N -0.62 -17.31 3.29 -810.06 -2.67 -19.98 16 6 C 0.53 15.89 7.89 87.66 0.69 16.58 16 7 O -0.59 -24.25 16.32 -3.04 -0.05 -24.30 16 8 C -0.12 -2.42 5.00 29.85 0.15 -2.27 16 9 C 0.08 1.87 5.23 71.98 0.38 2.25 16 10 O -0.39 -8.71 10.34 -148.08 -1.53 -10.24 16 11 C 0.06 1.10 5.68 71.98 0.41 1.51 16 12 C 0.07 1.14 3.63 31.28 0.11 1.25 16 13 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 14 C -0.15 -1.34 6.59 31.90 0.21 -1.13 16 15 C -0.15 -1.16 7.01 31.59 0.22 -0.93 16 16 C 0.03 0.43 7.70 72.35 0.56 0.98 16 17 O -0.40 -8.06 11.22 -148.08 -1.66 -9.72 16 18 C 0.12 4.03 6.31 86.53 0.55 4.58 16 19 C -0.09 -2.88 2.65 -9.91 -0.03 -2.90 16 20 H 0.09 2.77 7.85 -2.39 -0.02 2.75 16 21 C 0.16 6.69 5.34 86.38 0.46 7.15 16 22 N -0.74 -39.30 5.33 -343.42 -1.83 -41.13 16 23 C -0.25 -14.57 9.99 84.03 0.84 -13.73 16 24 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 25 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 26 N -0.97 -61.15 13.06 21.65 0.28 -60.87 16 27 Si 0.97 47.75 29.55 68.60 2.03 49.78 16 28 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 29 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 30 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.11 1.32 7.23 -2.39 -0.02 1.31 16 35 H 0.10 1.37 8.01 -2.39 -0.02 1.35 16 36 H 0.12 2.06 7.90 -2.39 -0.02 2.04 16 37 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.05 1.27 8.10 -2.38 -0.02 1.26 16 39 H 0.04 1.10 8.10 -2.38 -0.02 1.08 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.76 8.06 -2.39 -0.02 0.74 16 44 H 0.09 0.43 8.14 -2.39 -0.02 0.42 16 45 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.04 1.81 7.49 -2.38 -0.02 1.80 16 50 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 51 H 0.03 1.19 8.14 -2.38 -0.02 1.18 16 52 H 0.37 20.90 7.51 -92.71 -0.70 20.21 16 53 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -80.14 424.02 0.94 -79.20 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.17 Total: 29.00 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.20 Total: 8.26 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -4.22 Total: -121.98 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -3.24 Total: -44.26 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -80.14 0.94 -79.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106360525.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.050 kcal (2) G-P(sol) polarization free energy of solvation -80.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds