Wall clock time and date at job start Wed Apr 1 2020 00:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.65628 * 2 1 4 4 C 1.54591 * 110.99391 * 236.84109 * 2 1 3 5 5 N 1.48117 * 103.42556 * 204.37630 * 4 2 1 6 6 C 1.34774 * 127.03314 * 219.28973 * 5 4 2 7 7 O 1.21280 * 120.00003 * 179.68186 * 6 5 4 8 8 C 1.50706 * 119.99741 * 359.67797 * 6 5 4 9 9 C 1.53007 * 109.46500 * 180.02562 * 8 6 5 10 10 O 1.42905 * 109.46384 * 180.02562 * 9 8 6 11 11 C 1.42908 * 113.99577 * 179.97438 * 10 9 8 12 12 C 1.53175 * 109.54043 * 90.44155 * 11 10 9 13 13 C 1.53092 * 109.16179 * 176.84918 * 12 11 10 14 14 O 1.42910 * 109.41107 * 302.39040 * 13 12 11 15 15 C 1.42900 * 114.09727 * 61.16189 * 14 13 12 16 16 C 1.53090 * 109.41229 * 298.83586 * 15 14 13 17 17 C 1.47483 * 105.93006 * 39.02263 * 5 4 2 18 18 C 1.54001 * 107.08465 * 334.78038 * 17 5 4 19 19 H 1.09003 * 110.32853 * 120.20399 * 18 17 5 20 20 C 1.53003 * 110.32645 * 242.30901 * 18 17 5 21 21 N 1.46503 * 109.47571 * 293.55024 * 20 18 17 22 22 C 1.36931 * 120.00087 * 180.02562 * 21 20 18 23 23 H 1.08001 * 120.00170 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00058 * 179.97438 * 22 21 20 25 25 N 1.31615 * 120.00214 * 179.97438 * 24 22 21 26 26 Si 1.86808 * 119.99774 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46927 * 89.99896 * 26 24 22 28 28 H 1.48499 * 109.46803 * 209.99788 * 26 24 22 29 29 H 1.48501 * 109.46816 * 329.99952 * 26 24 22 30 30 H 1.09000 * 109.47726 * 296.81374 * 1 2 3 31 31 H 1.09004 * 109.47044 * 56.81387 * 1 2 3 32 32 H 1.09005 * 109.47079 * 176.80679 * 1 2 3 33 33 H 1.09003 * 110.61684 * 85.85916 * 4 2 1 34 34 H 1.09004 * 110.54418 * 322.85526 * 4 2 1 35 35 H 1.08990 * 109.47253 * 60.00287 * 8 6 5 36 36 H 1.08999 * 109.47074 * 299.99529 * 8 6 5 37 37 H 1.08990 * 109.47598 * 59.99929 * 9 8 6 38 38 H 1.08999 * 109.46607 * 299.99245 * 9 8 6 39 39 H 1.08997 * 109.61229 * 330.22369 * 11 10 9 40 40 H 1.09006 * 109.52647 * 296.75219 * 12 11 10 41 41 H 1.08998 * 109.52537 * 56.94111 * 12 11 10 42 42 H 1.08998 * 109.48147 * 182.40843 * 13 12 11 43 43 H 1.08997 * 109.48550 * 62.37144 * 13 12 11 44 44 H 1.09003 * 109.47953 * 178.86010 * 15 14 13 45 45 H 1.08995 * 109.49265 * 58.82602 * 15 14 13 46 46 H 1.09001 * 109.52724 * 297.70937 * 16 15 14 47 47 H 1.09000 * 109.52338 * 177.51272 * 16 15 14 48 48 H 1.08998 * 109.91345 * 94.14161 * 17 5 4 49 49 H 1.09007 * 109.90892 * 215.22735 * 17 5 4 50 50 H 1.09003 * 109.46903 * 53.54645 * 20 18 17 51 51 H 1.09004 * 109.47237 * 173.54584 * 20 18 17 52 52 H 0.97001 * 119.99611 * 359.97438 * 21 20 18 53 53 H 0.97004 * 120.00204 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0200 0.0000 4 6 2.0838 -0.7894 -1.2083 5 7 3.4322 -1.2057 -0.7582 6 6 4.5594 -1.2405 -1.4962 7 8 5.6027 -1.5999 -0.9930 8 6 4.5233 -0.8328 -2.9466 9 6 5.9241 -0.9638 -3.5481 10 8 5.8900 -0.5767 -4.9232 11 6 7.1550 -0.6622 -5.5826 12 6 7.3153 -2.0526 -6.2051 13 6 8.6372 -2.1090 -6.9752 14 8 8.6518 -1.0826 -7.9695 15 6 8.5528 0.2419 -7.4422 16 6 7.2275 0.3927 -6.6909 17 6 3.2902 -1.5680 0.6643 18 6 2.0774 -0.7915 1.2101 19 1 1.3220 -1.4829 1.5835 20 6 2.5152 0.1660 2.3203 21 7 2.9824 -0.6056 3.4747 22 6 3.4264 0.0418 4.5966 23 1 3.4326 1.1213 4.6304 24 6 3.8686 -0.6893 5.6907 25 7 4.2958 -0.0670 6.7689 26 14 3.8572 -2.5564 5.6326 27 1 5.1541 -3.0429 5.0973 28 1 3.6545 -3.0929 7.0023 29 1 2.7539 -3.0175 4.7519 30 1 -0.3634 0.4636 0.9171 31 1 -0.3633 0.5625 -0.8601 32 1 -0.3633 -1.0261 -0.0572 33 1 2.1526 -0.1480 -2.0869 34 1 1.4613 -1.6602 -1.4142 35 1 4.1891 0.2016 -3.0251 36 1 3.8336 -1.4797 -3.4888 37 1 6.2580 -1.9983 -3.4696 38 1 6.6141 -0.3172 -3.0060 39 1 7.9552 -0.4906 -4.8627 40 1 7.3203 -2.8061 -5.4174 41 1 6.4874 -2.2437 -6.8879 42 1 8.7366 -3.0822 -7.4560 43 1 9.4670 -1.9580 -6.2848 44 1 8.5913 0.9623 -8.2594 45 1 9.3814 0.4238 -6.7579 46 1 6.3978 0.2510 -7.3835 47 1 7.1697 1.3881 -6.2505 48 1 3.1178 -2.6401 0.7589 49 1 4.1908 -1.2873 1.2105 50 1 3.3237 0.7997 1.9556 51 1 1.6711 0.7886 2.6169 52 1 2.9765 -1.5751 3.4445 53 1 4.6051 -0.5779 7.5332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106857726.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:33 Heat of formation + Delta-G solvation = -149.160455 kcal Electronic energy + Delta-G solvation = -29856.040712 eV Core-core repulsion = 25726.610371 eV Total energy + Delta-G solvation = -4129.430341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.33559 -40.60130 -39.35055 -38.40944 -36.62563 -34.34619 -33.97440 -33.32771 -32.17575 -32.11839 -30.80626 -27.62502 -27.21766 -25.64708 -24.92818 -24.62256 -23.93763 -22.44705 -21.44980 -21.10397 -20.23745 -19.68560 -18.54433 -17.71393 -17.45821 -17.10685 -16.94855 -16.68712 -16.58120 -16.34996 -15.96565 -15.82878 -15.46003 -15.25901 -14.94375 -14.80117 -14.70718 -14.25385 -14.19620 -14.00687 -13.79859 -13.52553 -13.37522 -13.20329 -13.06212 -12.94267 -12.83786 -12.67306 -12.57975 -12.35304 -12.14128 -12.13177 -11.89603 -11.86971 -11.83673 -11.50736 -11.45033 -11.39122 -11.06285 -11.00577 -10.70569 -10.54479 -9.78025 -9.34402 -8.06903 -5.40481 1.32517 1.37932 1.43903 1.51019 1.73795 2.44200 2.57961 2.92385 3.24413 3.34650 3.50346 3.64593 3.69144 3.70529 3.75992 3.93198 3.96243 3.99786 4.01828 4.11236 4.19828 4.23626 4.32609 4.41287 4.43674 4.50099 4.53804 4.58119 4.65731 4.66250 4.70625 4.73460 4.75215 4.77466 4.82879 4.87120 4.92382 4.99830 5.01600 5.08409 5.08764 5.16782 5.19905 5.25197 5.38675 5.55811 5.71152 6.11164 6.16938 6.18850 6.49115 7.03116 7.03980 7.79304 7.98117 9.14646 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.001990 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.232119 B =14064.892498 C =15131.568359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.526 3.474 7 O -0.594 6.594 8 C -0.119 4.119 9 C 0.081 3.919 10 O -0.386 6.386 11 C 0.082 3.918 12 C -0.175 4.175 13 C 0.061 3.939 14 O -0.401 6.401 15 C 0.060 3.940 16 C -0.148 4.148 17 C 0.107 3.893 18 C -0.097 4.097 19 H 0.099 0.901 20 C 0.165 3.835 21 N -0.758 5.758 22 C -0.236 4.236 23 H 0.055 0.945 24 C -0.065 4.065 25 N -0.983 5.983 26 Si 0.953 3.047 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.246 1.246 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.045 0.955 50 H 0.011 0.989 51 H 0.034 0.966 52 H 0.366 0.634 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -2.545 -34.019 34.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.099 0.901 4 C -0.017 4.017 5 N -0.351 5.351 6 C 0.316 3.684 7 O -0.476 6.476 8 C -0.159 4.159 9 C 0.003 3.997 10 O -0.305 6.305 11 C 0.024 3.976 12 C -0.213 4.213 13 C -0.015 4.015 14 O -0.320 6.320 15 C -0.016 4.016 16 C -0.186 4.186 17 C -0.016 4.016 18 C -0.117 4.117 19 H 0.117 0.883 20 C 0.039 3.961 21 N -0.403 5.403 22 C -0.367 4.367 23 H 0.073 0.927 24 C -0.256 4.256 25 N -0.633 5.633 26 Si 0.780 3.220 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.170 1.170 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.127 0.873 43 H 0.077 0.923 44 H 0.133 0.867 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.029 0.971 51 H 0.052 0.948 52 H 0.199 0.801 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.757 -2.526 -33.993 34.132 hybrid contribution 0.715 -0.938 1.653 2.030 sum -1.042 -3.464 -32.340 32.542 Atomic orbital electron populations 1.21711 0.91602 1.03118 1.02828 1.22221 0.97719 0.99104 0.92191 0.90137 1.22911 0.80805 1.00025 0.97990 1.48897 1.09715 1.65395 1.11119 1.20744 0.81532 0.76894 0.89185 1.90726 1.31802 1.50381 1.74643 1.21375 0.98973 1.06209 0.89305 1.22061 0.96530 0.99429 0.81638 1.87825 1.31681 1.88141 1.22859 1.22264 0.85707 0.95509 0.94115 1.22696 0.99902 0.97769 1.00976 1.22662 0.95484 0.92278 0.91107 1.87921 1.94309 1.15619 1.34166 1.22735 0.95333 0.84246 0.99286 1.22279 0.99791 0.99340 0.97205 1.22043 0.98694 0.99167 0.81740 1.22348 0.96324 0.97629 0.95367 0.88306 1.20824 0.95960 0.93396 0.85906 1.42727 1.78721 1.04704 1.14185 1.19028 1.33542 0.91977 0.92120 0.92674 1.25528 1.01470 1.02809 0.95796 1.69881 1.50993 1.36407 1.06053 0.85441 0.78671 0.80736 0.77189 1.21160 1.21769 1.17002 0.92891 0.90115 0.91297 0.86925 0.88277 0.85971 0.85551 0.93292 0.93712 0.91922 0.90539 0.90594 0.87297 0.92316 0.86650 0.92154 0.90548 0.89335 0.91267 0.93663 0.97107 0.94762 0.80131 0.93285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.17 71.98 0.66 -1.11 16 2 C -0.09 -1.65 3.18 -9.70 -0.03 -1.68 16 3 H 0.08 1.57 7.87 -2.38 -0.02 1.55 16 4 C 0.10 1.48 6.38 86.61 0.55 2.03 16 5 N -0.62 -14.89 3.29 -810.08 -2.67 -17.56 16 6 C 0.53 14.00 7.89 87.66 0.69 14.69 16 7 O -0.59 -22.05 16.32 -3.03 -0.05 -22.10 16 8 C -0.12 -2.03 5.00 29.85 0.15 -1.89 16 9 C 0.08 1.60 5.04 71.98 0.36 1.97 16 10 O -0.39 -7.07 10.00 -148.98 -1.49 -8.56 16 11 C 0.08 1.27 2.70 30.71 0.08 1.35 16 12 C -0.18 -2.47 5.76 30.68 0.18 -2.29 16 13 C 0.06 0.77 6.84 72.01 0.49 1.26 16 14 O -0.40 -6.23 10.77 -148.98 -1.60 -7.84 16 15 C 0.06 0.68 6.84 72.01 0.49 1.17 16 16 C -0.15 -1.87 5.79 30.68 0.18 -1.69 16 17 C 0.11 3.19 6.31 86.53 0.55 3.74 16 18 C -0.10 -2.59 2.64 -9.90 -0.03 -2.62 16 19 H 0.10 2.44 7.85 -2.39 -0.02 2.42 16 20 C 0.17 6.21 5.35 86.38 0.46 6.67 16 21 N -0.76 -36.06 5.14 -343.44 -1.76 -37.83 16 22 C -0.24 -13.86 10.47 84.03 0.88 -12.98 16 23 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 24 C -0.06 -3.92 5.50 84.86 0.47 -3.45 16 25 N -0.98 -64.53 13.97 21.65 0.30 -64.23 16 26 Si 0.95 46.74 27.74 68.60 1.90 48.64 16 27 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 29 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 0.77 8.11 -2.38 -0.02 0.76 16 33 H 0.11 0.96 7.23 -2.39 -0.02 0.95 16 34 H 0.10 1.04 8.02 -2.38 -0.02 1.02 16 35 H 0.12 1.62 7.90 -2.39 -0.02 1.60 16 36 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.05 7.95 -2.39 -0.02 1.03 16 38 H 0.04 1.01 8.04 -2.39 -0.02 0.99 16 39 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 40 H 0.08 1.06 8.00 -2.38 -0.02 1.05 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.04 1.76 7.49 -2.38 -0.02 1.75 16 50 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 52 H 0.37 16.57 5.37 -92.71 -0.50 16.07 16 53 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -80.33 416.67 1.08 -79.25 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.31 Total: 25.06 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 6.14 Total: 5.16 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.13 Total: -119.62 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -3.14 Total: -38.50 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.90 Total: 48.64 kcal Total: -80.33 1.08 -79.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106857726.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.907 kcal (2) G-P(sol) polarization free energy of solvation -80.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds