Wall clock time and date at job start Wed Apr 1 2020 01:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47244 * 239.99894 * 2 1 3 5 5 O 1.21275 * 120.00339 * 240.00285 * 4 2 1 6 6 N 1.34785 * 119.99484 * 60.00170 * 4 2 1 7 7 C 1.46499 * 119.99349 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46950 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.50927 * 304.89659 * 8 7 6 10 10 C 1.53288 * 109.55566 * 184.77158 * 8 7 6 11 11 N 1.47148 * 108.38852 * 187.74536 * 10 8 7 12 12 C 1.36938 * 120.98705 * 230.55902 * 11 10 8 13 13 H 1.08001 * 119.99863 * 153.29877 * 12 11 10 14 14 C 1.38813 * 119.99808 * 333.30057 * 12 11 10 15 15 N 1.31618 * 119.99580 * 343.54885 * 14 12 11 16 16 Si 1.86796 * 119.99837 * 163.55016 * 14 12 11 17 17 H 1.48500 * 109.47585 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46899 * 120.00079 * 16 14 12 19 19 H 1.48505 * 109.47044 * 239.99720 * 16 14 12 20 20 C 1.47159 * 118.03554 * 50.53264 * 11 10 8 21 21 C 1.53301 * 108.38149 * 309.47195 * 20 11 10 22 22 O 1.42952 * 109.22472 * 52.29798 * 21 20 11 23 23 C 1.52998 * 109.47097 * 119.99842 * 2 1 3 24 24 C 1.53176 * 109.54730 * 299.55373 * 23 2 1 25 25 C 1.53092 * 109.16566 * 183.15206 * 24 23 2 26 26 O 1.42900 * 109.41354 * 57.60992 * 25 24 23 27 27 C 1.42896 * 114.09719 * 298.84081 * 26 25 24 28 28 C 1.53095 * 109.41521 * 61.16200 * 27 26 25 29 29 H 1.08998 * 109.47061 * 59.99652 * 1 2 3 30 30 H 1.08995 * 109.47134 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46997 * 300.00268 * 1 2 3 32 32 H 0.96994 * 119.99992 * 359.97438 * 6 4 2 33 33 H 1.08995 * 109.47594 * 59.99992 * 7 6 4 34 34 H 1.09003 * 109.47312 * 299.99328 * 7 6 4 35 35 H 1.08995 * 109.47084 * 180.10167 * 9 8 7 36 36 H 1.09004 * 109.47359 * 300.10180 * 9 8 7 37 37 H 1.08997 * 109.47160 * 60.10079 * 9 8 7 38 38 H 1.09001 * 109.68566 * 307.47086 * 10 8 7 39 39 H 1.09003 * 109.68257 * 67.98344 * 10 8 7 40 40 H 0.97005 * 119.99361 * 179.97438 * 15 14 12 41 41 H 1.08993 * 109.68793 * 189.74305 * 20 11 10 42 42 H 1.09006 * 109.67927 * 69.18579 * 20 11 10 43 43 H 1.08999 * 109.50973 * 172.22266 * 21 20 11 44 44 H 1.09001 * 109.50729 * 292.32081 * 21 20 11 45 45 H 1.09002 * 109.54334 * 59.82299 * 23 2 1 46 46 H 1.08998 * 109.52569 * 303.06128 * 24 23 2 47 47 H 1.09006 * 109.51732 * 63.24806 * 24 23 2 48 48 H 1.09006 * 109.47658 * 297.62984 * 25 24 23 49 49 H 1.09002 * 109.48833 * 177.60242 * 25 24 23 50 50 H 1.08999 * 109.48594 * 301.17683 * 27 26 25 51 51 H 1.09005 * 109.48872 * 181.14953 * 27 26 25 52 52 H 1.09003 * 109.52155 * 182.48584 * 28 27 26 53 53 H 1.08990 * 109.52356 * 62.29675 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2498 -2.4546 7 6 2.1946 -0.9408 -3.6507 8 6 1.6853 -0.2191 -4.9000 9 6 0.1603 -0.1099 -4.8410 10 6 2.0942 -1.0065 -6.1500 11 7 1.7587 -0.2022 -7.3356 12 6 1.0429 -0.7390 -8.3723 13 1 0.4430 -0.0993 -9.0026 14 6 1.0883 -2.1054 -8.6128 15 7 2.0427 -2.8365 -8.0772 16 14 -0.2052 -2.9064 -9.6966 17 1 -1.1609 -1.8741 -10.1722 18 1 0.4539 -3.5464 -10.8632 19 1 -0.9372 -3.9356 -8.9154 20 6 2.2147 1.1964 -7.3743 21 6 1.7999 1.8765 -6.0645 22 8 2.2558 1.0903 -4.9610 23 6 2.0400 -0.7212 1.2492 24 6 1.5396 0.0060 2.5010 25 6 2.1188 -0.6755 3.7435 26 8 3.5457 -0.6695 3.6668 27 6 4.0725 -1.3756 2.5417 28 6 3.5718 -0.7222 1.2509 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1488 0.5386 -2.5435 33 1 1.8309 -1.9683 -3.6506 34 1 3.2847 -0.9412 -3.6509 35 1 -0.2020 0.4027 -5.7320 36 1 -0.2740 -1.1086 -4.7945 37 1 -0.1295 0.4539 -3.9543 38 1 3.1669 -1.1986 -6.1283 39 1 1.5526 -1.9519 -6.1818 40 1 2.0742 -3.7914 -8.2450 41 1 1.7525 1.7102 -8.2171 42 1 3.2997 1.2262 -7.4757 43 1 2.2460 2.8697 -6.0128 44 1 0.7140 1.9627 -6.0272 45 1 1.6747 -1.7482 1.2521 46 1 1.8634 1.0464 2.4719 47 1 0.4509 -0.0367 2.5363 48 1 1.7617 -1.7042 3.7935 49 1 1.8004 -0.1364 4.6358 50 1 3.7410 -2.4134 2.5760 51 1 5.1617 -1.3408 2.5680 52 1 3.9366 -1.2857 0.3921 53 1 3.9368 0.3034 1.1965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108446870.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:02 Heat of formation + Delta-G solvation = -136.487975 kcal Electronic energy + Delta-G solvation = -31599.587678 eV Core-core repulsion = 27470.706857 eV Total energy + Delta-G solvation = -4128.880821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.51622 -40.64391 -39.70025 -36.64647 -36.23308 -35.90494 -33.38386 -33.19955 -32.05397 -31.63374 -29.58119 -28.09440 -27.36188 -26.45815 -25.01010 -24.58253 -23.76581 -22.73442 -21.30561 -20.84975 -20.22741 -18.95853 -18.23435 -17.49432 -17.25963 -16.91898 -16.78358 -16.69986 -16.35372 -16.11568 -15.67122 -15.54704 -15.45656 -15.23704 -14.98806 -14.71981 -14.58095 -14.46155 -14.02095 -13.92260 -13.55770 -13.24202 -13.18634 -12.98171 -12.93386 -12.81995 -12.64010 -12.54563 -12.44345 -12.41008 -12.20724 -12.11819 -11.95489 -11.85791 -11.77600 -11.56315 -11.15062 -11.13318 -10.79668 -10.61701 -10.51162 -10.33553 -10.04199 -8.72403 -7.90713 -5.38113 1.44216 1.46654 1.56609 1.68065 2.17710 2.47404 2.78989 3.00242 3.24211 3.49530 3.58271 3.69017 3.80685 3.93120 4.01392 4.10010 4.11515 4.13567 4.26167 4.36093 4.41045 4.43493 4.44999 4.46472 4.56618 4.62995 4.65434 4.70661 4.74516 4.79812 4.82352 4.90475 4.96027 4.97865 4.98751 5.04001 5.05255 5.11658 5.14449 5.20082 5.26358 5.35410 5.36966 5.45151 5.50199 5.52936 5.60967 6.28704 6.29633 6.36999 6.59501 7.06024 7.29772 7.75159 8.29345 9.15015 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020539 B = 0.002400 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.924257 B =11665.943229 C =11987.463431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.114 0.886 4 C 0.509 3.491 5 O -0.579 6.579 6 N -0.707 5.707 7 C 0.150 3.850 8 C 0.094 3.906 9 C -0.152 4.152 10 C 0.168 3.832 11 N -0.607 5.607 12 C -0.257 4.257 13 H 0.074 0.926 14 C -0.051 4.051 15 N -0.937 5.937 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.295 1.295 19 H -0.290 1.290 20 C 0.101 3.899 21 C 0.053 3.947 22 O -0.386 6.386 23 C -0.066 4.066 24 C -0.144 4.144 25 C 0.053 3.947 26 O -0.404 6.404 27 C 0.064 3.936 28 C -0.160 4.160 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.413 0.587 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.079 0.921 38 H -0.010 1.010 39 H 0.066 0.934 40 H 0.250 0.750 41 H 0.072 0.928 42 H 0.011 0.989 43 H 0.117 0.883 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.051 0.949 49 H 0.111 0.889 50 H 0.047 0.953 51 H 0.096 0.904 52 H 0.075 0.925 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 10.079 21.189 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.132 0.868 4 C 0.297 3.703 5 O -0.459 6.459 6 N -0.359 5.359 7 C 0.025 3.975 8 C 0.053 3.947 9 C -0.209 4.209 10 C 0.041 3.959 11 N -0.331 5.331 12 C -0.387 4.387 13 H 0.092 0.908 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.223 1.223 19 H -0.217 1.217 20 C -0.024 4.024 21 C -0.024 4.024 22 O -0.305 6.305 23 C -0.085 4.085 24 C -0.181 4.181 25 C -0.023 4.023 26 O -0.323 6.323 27 C -0.013 4.013 28 C -0.197 4.197 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.008 0.992 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.117 0.883 48 H 0.069 0.931 49 H 0.129 0.871 50 H 0.066 0.934 51 H 0.114 0.886 52 H 0.093 0.907 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.811 9.403 21.466 23.924 hybrid contribution -0.400 -1.028 -1.762 2.079 sum -5.211 8.375 19.705 22.036 Atomic orbital electron populations 1.21862 0.90936 1.02869 1.04436 1.21374 0.98895 1.00874 0.90543 0.86800 1.21360 0.79301 0.84267 0.85394 1.90623 1.39683 1.28488 1.87130 1.45905 1.53324 1.32068 1.04634 1.20950 0.98532 0.95223 0.82786 1.22174 0.93957 0.84310 0.94239 1.22099 0.93890 1.02443 1.02500 1.21043 0.95844 0.94467 0.84534 1.44259 1.63417 1.08467 1.16972 1.19540 1.19488 0.91623 1.08046 0.90820 1.25813 0.99449 0.98400 1.00960 1.70194 1.32777 1.05882 1.49447 0.85222 0.79028 0.78406 0.77897 1.18659 1.22271 1.21709 1.21831 0.96528 0.85960 0.98110 1.23103 0.99677 0.94273 0.85391 1.87832 1.69004 1.25495 1.48181 1.20951 0.94836 0.99285 0.93455 1.22283 1.02292 1.00345 0.93209 1.22783 0.80044 1.00510 0.99003 1.87881 1.21995 1.75952 1.46503 1.22560 0.99198 0.94570 0.84950 1.22402 0.96532 1.01796 0.99015 0.91115 0.92874 0.88689 0.74973 0.91392 0.93033 0.91993 0.92683 0.90206 0.99221 0.91598 0.94107 0.90933 0.97120 0.86502 0.91981 0.91925 0.90411 0.88322 0.93100 0.87091 0.93447 0.88625 0.90669 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.75 71.98 0.63 -1.14 16 2 C -0.10 -1.66 2.32 -11.54 -0.03 -1.68 16 3 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.51 13.47 6.87 87.66 0.60 14.07 16 5 O -0.58 -20.12 13.67 -3.01 -0.04 -20.16 16 6 N -0.71 -18.49 5.09 -463.05 -2.36 -20.84 16 7 C 0.15 5.13 4.85 86.38 0.42 5.55 16 8 C 0.09 3.40 0.78 -10.70 -0.01 3.40 16 9 C -0.15 -4.75 7.86 71.98 0.57 -4.19 16 10 C 0.17 8.04 4.11 86.35 0.35 8.39 16 11 N -0.61 -29.55 2.56 -697.53 -1.79 -31.34 16 12 C -0.26 -13.60 9.65 84.03 0.81 -12.79 16 13 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 14 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 15 N -0.94 -55.13 11.14 21.65 0.24 -54.89 16 16 Si 0.97 43.89 29.58 68.60 2.03 45.92 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 C 0.10 4.02 6.74 86.35 0.58 4.60 16 21 C 0.05 1.64 6.60 72.08 0.48 2.12 16 22 O -0.39 -13.28 10.17 -148.98 -1.52 -14.79 16 23 C -0.07 -1.21 1.49 -10.68 -0.02 -1.23 16 24 C -0.14 -1.81 4.98 30.68 0.15 -1.66 16 25 C 0.05 0.76 6.84 72.01 0.49 1.25 16 26 O -0.40 -8.32 10.77 -148.98 -1.60 -9.92 16 27 C 0.06 1.30 6.84 72.01 0.49 1.79 16 28 C -0.16 -3.51 5.05 30.69 0.15 -3.35 16 29 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.72 6.52 -2.38 -0.02 0.70 16 32 H 0.41 8.68 6.41 -92.71 -0.59 8.09 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 2.12 6.11 -2.39 -0.01 2.10 16 36 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 1.87 6.59 -2.39 -0.02 1.86 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.07 3.54 6.16 -2.39 -0.01 3.52 16 40 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 41 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.06 1.80 6.26 -2.39 -0.01 1.78 16 45 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 46 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.10 0.81 6.63 -2.38 -0.02 0.80 16 48 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.10 1.79 8.14 -2.38 -0.02 1.78 16 52 H 0.07 2.11 5.61 -2.39 -0.01 2.10 16 53 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -69.49 397.09 1.37 -68.12 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.30 Total: 25.14 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 6.10 Total: 12.77 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.90 Total: -107.07 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -3.16 Total: -44.87 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -69.49 1.37 -68.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108446870.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.371 kcal (2) G-P(sol) polarization free energy of solvation -69.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds