Wall clock time and date at job start Wed Apr 1 2020 00:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47143 * 2 1 4 4 O 1.42902 * 109.46973 * 120.00166 * 2 1 3 5 5 C 1.42894 * 113.99933 * 149.99705 * 4 2 1 6 6 C 1.50702 * 109.47282 * 179.97438 * 5 4 2 7 7 O 1.21283 * 119.99921 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00097 * 180.02562 * 6 5 4 9 9 C 1.47150 * 120.98798 * 359.97438 * 8 6 5 10 10 C 1.53298 * 108.37208 * 230.57422 * 9 8 6 11 11 H 1.09003 * 109.51127 * 67.58533 * 10 9 8 12 12 C 1.53001 * 109.51291 * 187.67571 * 10 9 8 13 13 O 1.42967 * 109.23476 * 307.65314 * 10 9 8 14 14 C 1.42901 * 114.20448 * 62.48457 * 13 10 9 15 15 C 1.52989 * 109.56091 * 57.47906 * 14 13 10 16 16 C 1.53197 * 109.34590 * 59.03783 * 15 14 13 17 17 N 1.46931 * 108.77636 * 54.56955 * 16 15 14 18 18 C 1.36939 * 120.63898 * 126.35390 * 17 16 15 19 19 H 1.08009 * 119.99689 * 207.66775 * 18 17 16 20 20 C 1.38802 * 120.00333 * 27.66594 * 18 17 16 21 21 N 1.31621 * 119.99976 * 17.37557 * 20 18 17 22 22 Si 1.86797 * 120.00382 * 197.37136 * 20 18 17 23 23 H 1.48501 * 109.47172 * 59.99876 * 22 20 18 24 24 H 1.48503 * 109.47508 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47451 * 300.00277 * 22 20 18 26 26 C 1.46928 * 118.71775 * 306.32847 * 17 16 15 27 27 C 1.52991 * 109.54362 * 177.77985 * 14 13 10 28 28 C 1.47149 * 120.98712 * 179.97438 * 8 6 5 29 29 H 1.09003 * 109.47185 * 300.00152 * 1 2 3 30 30 H 1.08998 * 109.47019 * 59.99746 * 1 2 3 31 31 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47185 * 239.99848 * 2 1 3 33 33 H 1.08998 * 109.47371 * 300.00039 * 3 2 1 34 34 H 1.09003 * 109.47204 * 59.99860 * 3 2 1 35 35 H 1.09000 * 109.46892 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47241 * 60.00214 * 5 4 2 37 37 H 1.09000 * 109.47346 * 300.00009 * 5 4 2 38 38 H 1.08995 * 109.68628 * 110.85649 * 9 8 6 39 39 H 1.09001 * 109.68894 * 350.29481 * 9 8 6 40 40 H 1.09008 * 109.47049 * 59.90447 * 12 10 9 41 41 H 1.08995 * 109.47211 * 179.90550 * 12 10 9 42 42 H 1.09002 * 109.47072 * 299.91066 * 12 10 9 43 43 H 1.09002 * 109.48970 * 178.99672 * 15 14 13 44 44 H 1.08990 * 109.49140 * 299.07453 * 15 14 13 45 45 H 1.08994 * 109.58634 * 294.77873 * 16 15 14 46 46 H 1.09004 * 109.58570 * 174.35526 * 16 15 14 47 47 H 0.97006 * 119.99855 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.58796 * 293.88299 * 26 17 16 49 49 H 1.09000 * 109.58611 * 173.46048 * 26 17 16 50 50 H 1.09002 * 109.49325 * 60.91646 * 27 14 13 51 51 H 1.09005 * 109.49379 * 180.99647 * 27 14 13 52 52 H 1.09005 * 109.68012 * 249.26962 * 28 8 6 53 53 H 1.09004 * 109.67950 * 9.80489 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9886 6 6 3.6698 -1.9979 2.2749 7 8 2.9496 -1.9278 3.2482 8 7 4.8313 -2.6781 2.3436 9 6 5.7212 -2.7777 1.1759 10 6 6.0772 -4.2536 0.9641 11 1 5.1870 -4.8023 0.6564 12 6 7.1496 -4.3701 -0.1209 13 8 6.5745 -4.7986 2.1887 14 6 5.6291 -4.7904 3.2603 15 6 4.3767 -5.5643 2.8444 16 6 4.7639 -7.0033 2.4893 17 7 5.4889 -7.5917 3.6238 18 6 5.0826 -8.7793 4.1714 19 1 5.2858 -8.9923 5.2105 20 6 4.4095 -9.7091 3.3910 21 7 4.4555 -9.6232 2.0784 22 14 3.4386 -11.0826 4.2036 23 1 2.3764 -10.4977 5.0609 24 1 2.8170 -11.9349 3.1584 25 1 4.3498 -11.9067 5.0377 26 6 6.6585 -6.8816 4.1590 27 6 6.2506 -5.4439 4.4961 28 6 5.2472 -3.3433 3.5886 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 4.0199 -0.5875 0.7125 37 1 3.1808 -2.0707 0.1986 38 1 6.6297 -2.2032 1.3567 39 1 5.2123 -2.3923 0.2924 40 1 8.0395 -3.8212 0.1873 41 1 7.4033 -5.4196 -0.2698 42 1 6.7699 -3.9522 -1.0533 43 1 3.6637 -5.5724 3.6689 44 1 3.9243 -5.0846 1.9766 45 1 5.4043 -7.0023 1.6073 46 1 3.8641 -7.5851 2.2893 47 1 3.9848 -10.2729 1.5331 48 1 7.4526 -6.8707 3.4124 49 1 7.0092 -7.3830 5.0611 50 1 7.1307 -4.8787 4.8028 51 1 5.5229 -5.4531 5.3076 52 1 6.1068 -2.8242 4.0126 53 1 4.4236 -3.3341 4.3025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111536584.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:59 Heat of formation + Delta-G solvation = -119.504666 kcal Electronic energy + Delta-G solvation = -32282.197297 eV Core-core repulsion = 28154.052928 eV Total energy + Delta-G solvation = -4128.144370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.92481 -40.30040 -38.93682 -37.95820 -35.81872 -35.15164 -33.74653 -33.18134 -31.84507 -31.29334 -29.86370 -28.18663 -27.84007 -27.19779 -25.59793 -24.20149 -23.15572 -22.26734 -22.23772 -20.65596 -20.19848 -18.89513 -18.41989 -18.00888 -17.30582 -17.03337 -16.83948 -16.78799 -16.20038 -15.87160 -15.76162 -15.49373 -15.28212 -15.03150 -14.87905 -14.71298 -14.47300 -13.98218 -13.83819 -13.54493 -13.34889 -13.31366 -13.13390 -13.09723 -13.04386 -12.92912 -12.86888 -12.81360 -12.60843 -12.56090 -12.37213 -12.28087 -12.02986 -11.91526 -11.74781 -11.65580 -11.44326 -11.30360 -10.80984 -10.77345 -10.65603 -10.52563 -9.55721 -8.67872 -7.88402 -5.32752 1.44049 1.44304 1.47416 1.53601 1.58544 2.49567 2.70010 2.77807 3.25711 3.43117 3.57844 3.67498 3.81798 3.88789 3.91679 3.99199 4.05609 4.07435 4.15433 4.22789 4.24696 4.29360 4.40316 4.44087 4.46548 4.61072 4.66861 4.68962 4.74831 4.75665 4.81358 4.84217 4.91644 4.93199 4.93548 4.96606 5.04328 5.11810 5.15185 5.27792 5.29536 5.33614 5.33956 5.37180 5.45752 5.62799 5.69867 6.09931 6.31303 6.35284 6.39126 7.03141 7.13805 7.85745 8.38439 9.17936 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003085 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.295350 B = 9073.325155 C = 9909.067044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 C -0.172 4.172 4 O -0.395 6.395 5 C 0.050 3.950 6 C 0.508 3.492 7 O -0.573 6.573 8 N -0.609 5.609 9 C 0.081 3.919 10 C 0.059 3.941 11 H 0.045 0.955 12 C -0.134 4.134 13 O -0.371 6.371 14 C 0.126 3.874 15 C -0.145 4.145 16 C 0.196 3.804 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.273 1.273 26 C 0.150 3.850 27 C -0.110 4.110 28 C 0.098 3.902 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.102 0.898 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.000 1.000 46 H 0.045 0.955 47 H 0.249 0.751 48 H 0.018 0.982 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.071 0.929 52 H 0.094 0.906 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 22.891 -9.249 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 C -0.229 4.229 4 O -0.314 6.314 5 C -0.030 4.030 6 C 0.298 3.702 7 O -0.452 6.452 8 N -0.344 5.344 9 C -0.040 4.040 10 C 0.001 3.999 11 H 0.063 0.937 12 C -0.191 4.191 13 O -0.291 6.291 14 C 0.086 3.914 15 C -0.184 4.184 16 C 0.070 3.930 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.085 0.915 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.208 1.208 24 H -0.219 1.219 25 H -0.198 1.198 26 C 0.024 3.976 27 C -0.149 4.149 28 C -0.025 4.025 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.142 0.858 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.018 0.982 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.036 0.964 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.090 0.910 52 H 0.112 0.888 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.646 22.761 -8.655 24.407 hybrid contribution -0.870 -1.272 0.245 1.560 sum 0.776 21.489 -8.410 23.089 Atomic orbital electron populations 1.21904 0.93362 1.02444 1.03153 1.22447 0.95503 0.93230 0.87477 1.22289 1.01890 0.95701 1.03043 1.88046 1.35531 1.70327 1.37511 1.22370 0.88587 0.98105 0.93896 1.21010 0.80083 0.78546 0.90596 1.90700 1.52723 1.61831 1.39922 1.48157 1.20568 1.51999 1.13640 1.22782 0.95575 0.97216 0.88460 1.22659 0.98390 0.92755 0.86097 0.93724 1.21700 0.98116 1.02610 0.96723 1.87993 1.38327 1.83057 1.19677 1.21512 0.88756 0.92565 0.88562 1.22467 0.97538 0.98181 1.00227 1.20294 0.95011 0.89454 0.88208 1.44294 1.29764 1.21981 1.37240 1.19506 1.32773 0.93697 0.93405 0.91519 1.25783 1.03283 0.99944 0.95696 1.70189 1.45479 1.38103 1.04234 0.85368 0.78931 0.79002 0.77328 1.20803 1.21915 1.19837 1.20897 0.88723 0.91356 0.96589 1.21893 1.01368 0.96929 0.94734 1.22222 1.01126 0.92191 0.86925 0.92970 0.88599 0.92973 0.89817 0.89424 0.93126 0.91783 0.86886 0.88002 0.87887 0.85824 0.90440 0.93619 0.87937 0.93620 0.92649 0.98185 0.93697 0.94192 0.96413 0.92630 0.88857 0.91047 0.88812 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.56 71.98 0.69 -1.58 16 2 C 0.07 1.07 3.34 30.59 0.10 1.17 16 3 C -0.17 -2.02 9.53 71.98 0.69 -1.34 16 4 O -0.39 -9.50 9.52 -129.94 -1.24 -10.74 16 5 C 0.05 0.94 4.60 71.24 0.33 1.26 16 6 C 0.51 14.36 7.79 87.66 0.68 15.05 16 7 O -0.57 -22.28 15.97 16.00 0.26 -22.02 16 8 N -0.61 -15.28 2.52 -817.49 -2.06 -17.34 16 9 C 0.08 1.41 5.83 86.36 0.50 1.91 16 10 C 0.06 1.45 3.01 30.69 0.09 1.55 16 11 H 0.04 1.32 6.29 -2.39 -0.02 1.30 16 12 C -0.13 -2.51 9.57 71.98 0.69 -1.82 16 13 O -0.37 -11.98 8.64 -148.98 -1.29 -13.26 16 14 C 0.13 4.26 0.68 -10.73 -0.01 4.25 16 15 C -0.14 -5.94 4.33 30.66 0.13 -5.80 16 16 C 0.20 9.93 5.08 86.36 0.44 10.37 16 17 N -0.61 -31.86 2.99 -699.07 -2.09 -33.95 16 18 C -0.26 -15.01 9.59 84.03 0.81 -14.20 16 19 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 20 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 21 N -0.93 -56.70 11.19 21.65 0.24 -56.46 16 22 Si 0.97 46.27 29.59 68.60 2.03 48.30 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 C 0.15 6.43 6.28 86.36 0.54 6.98 16 27 C -0.11 -3.77 5.10 30.66 0.16 -3.62 16 28 C 0.10 2.85 5.29 86.33 0.46 3.30 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.89 7.79 -2.39 -0.02 0.87 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 36 H 0.11 1.29 7.74 -2.39 -0.02 1.28 16 37 H 0.10 1.45 7.60 -2.39 -0.02 1.43 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 1.22 6.05 -2.39 -0.01 1.21 16 40 H 0.08 1.23 8.14 -2.38 -0.02 1.22 16 41 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 43 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.05 2.15 6.15 -2.39 -0.01 2.13 16 45 H 0.00 0.01 7.83 -2.39 -0.02 -0.01 16 46 H 0.04 2.60 6.03 -2.39 -0.01 2.59 16 47 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 48 H 0.02 0.80 7.82 -2.39 -0.02 0.78 16 49 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 50 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 51 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 52 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 53 H 0.08 2.63 7.07 -2.38 -0.02 2.61 16 Total: -1.00 -78.87 404.46 3.43 -75.44 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.87 Total: 15.13 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.71 Total: 14.91 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -3.91 Total: -107.76 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -2.27 Total: -46.02 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -78.87 3.43 -75.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111536584.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.061 kcal (2) G-P(sol) polarization free energy of solvation -78.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds