Wall clock time and date at job start Wed Apr 1 2020 00:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00020 * 2 1 4 4 C 1.53005 * 109.46964 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47101 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47284 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99819 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00285 * 179.97438 * 6 5 4 9 9 C 1.47155 * 120.98519 * 0.02562 * 8 6 5 10 10 C 1.53297 * 108.37388 * 129.42037 * 9 8 6 11 11 H 1.08997 * 109.50543 * 292.42038 * 10 9 8 12 12 C 1.53002 * 109.55080 * 172.29720 * 10 9 8 13 13 O 1.42965 * 109.23353 * 52.34280 * 10 9 8 14 14 C 1.42896 * 114.21395 * 297.52216 * 13 10 9 15 15 C 1.52985 * 109.56474 * 302.50955 * 14 13 10 16 16 C 1.53182 * 109.35750 * 300.93982 * 15 14 13 17 17 N 1.46930 * 108.77798 * 305.42732 * 16 15 14 18 18 C 1.36934 * 120.64587 * 233.70195 * 17 16 15 19 19 H 1.07999 * 120.00292 * 27.66429 * 18 17 16 20 20 C 1.38821 * 119.99672 * 207.66930 * 18 17 16 21 21 N 1.31613 * 120.00265 * 17.36256 * 20 18 17 22 22 Si 1.86798 * 119.99471 * 197.36378 * 20 18 17 23 23 H 1.48503 * 109.47413 * 60.00088 * 22 20 18 24 24 H 1.48508 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47356 * 300.00017 * 22 20 18 26 26 C 1.46933 * 118.70904 * 53.67474 * 17 16 15 27 27 C 1.52999 * 109.55192 * 182.20482 * 14 13 10 28 28 C 1.47151 * 120.99031 * 180.02562 * 8 6 5 29 29 H 1.08998 * 109.47597 * 59.99276 * 1 2 3 30 30 H 1.08995 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46581 * 299.99316 * 1 2 3 32 32 H 1.08996 * 109.46603 * 60.01058 * 3 2 1 33 33 H 1.08991 * 109.47602 * 300.00712 * 3 2 1 34 34 H 1.08994 * 109.47055 * 60.00134 * 4 3 2 35 35 H 1.09000 * 109.47220 * 300.00335 * 4 3 2 36 36 H 1.08999 * 109.47220 * 59.99466 * 5 4 3 37 37 H 1.09000 * 109.46877 * 299.99957 * 5 4 3 38 38 H 1.08999 * 109.68758 * 9.69845 * 9 8 6 39 39 H 1.09007 * 109.68451 * 249.13808 * 9 8 6 40 40 H 1.08996 * 109.47105 * 300.21411 * 12 10 9 41 41 H 1.08997 * 109.46873 * 60.21923 * 12 10 9 42 42 H 1.08998 * 109.47014 * 180.21797 * 12 10 9 43 43 H 1.09004 * 109.48534 * 60.90835 * 15 14 13 44 44 H 1.09002 * 109.49018 * 180.97168 * 15 14 13 45 45 H 1.09000 * 109.59087 * 185.63621 * 16 15 14 46 46 H 1.09004 * 109.70324 * 65.28263 * 16 15 14 47 47 H 0.97000 * 120.00016 * 179.97438 * 21 20 18 48 48 H 1.09007 * 109.58242 * 186.53507 * 26 17 16 49 49 H 1.08996 * 109.70243 * 66.18284 * 26 17 16 50 50 H 1.09004 * 109.49251 * 179.02882 * 27 14 13 51 51 H 1.09002 * 109.48916 * 299.07853 * 27 14 13 52 52 H 1.08997 * 109.67749 * 350.19657 * 28 8 6 53 53 H 1.08998 * 109.67406 * 110.70257 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 -0.0013 7 8 6.1817 1.3683 -0.0021 8 7 6.4241 3.5736 -0.0015 9 6 5.8142 4.9128 0.0001 10 6 6.4561 5.7348 1.1237 11 1 6.1670 5.3195 2.0891 12 6 5.9835 7.1870 1.0298 13 8 7.8786 5.6858 0.9894 14 6 8.4347 4.3758 1.1177 15 6 8.0432 3.7836 2.4729 16 6 8.5615 4.6915 3.5926 17 7 10.0068 4.8858 3.4131 18 6 10.8789 4.6208 4.4350 19 1 10.6262 3.8843 5.1833 20 6 12.0878 5.2991 4.5091 21 7 12.2606 6.4125 3.8288 22 14 13.4694 4.6316 5.5745 23 1 13.8474 3.2752 5.1025 24 1 14.6454 5.5338 5.4827 25 1 13.0136 4.5554 6.9857 26 6 10.4982 5.3694 2.1155 27 6 9.9590 4.4540 1.0119 28 6 7.8928 3.4827 -0.0033 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6887 1.8462 0.8901 33 1 1.6886 1.8465 -0.8898 34 1 3.8567 0.6439 -0.8908 35 1 3.8575 0.6435 0.8891 36 1 3.8365 3.1227 0.8904 37 1 3.8359 3.1237 -0.8895 38 1 4.7416 4.8277 0.1742 39 1 5.9936 5.3991 -0.9589 40 1 6.2714 7.6010 0.0636 41 1 4.8990 7.2234 1.1323 42 1 6.4436 7.7710 1.8269 43 1 6.9576 3.7098 2.5376 44 1 8.4823 2.7913 2.5767 45 1 8.3729 4.2239 4.5590 46 1 8.0549 5.6556 3.5481 47 1 13.1052 6.8866 3.8809 48 1 11.5880 5.3492 2.1070 49 1 10.1502 6.3885 1.9475 50 1 10.3832 3.4565 1.1271 51 1 10.2357 4.8566 0.0375 52 1 8.1969 2.4505 0.1705 53 1 8.2803 3.8228 -0.9636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111536914.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:04 Heat of formation + Delta-G solvation = -125.976095 kcal Electronic energy + Delta-G solvation = -31780.545920 eV Core-core repulsion = 27652.120928 eV Total energy + Delta-G solvation = -4128.424992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.89224 -40.16344 -38.82517 -37.96531 -35.76307 -35.18110 -34.56099 -33.29786 -31.69366 -31.28770 -29.55532 -28.19631 -27.27444 -26.65692 -25.53500 -24.21090 -23.26283 -22.72090 -22.02879 -20.55382 -19.97413 -18.88384 -18.28790 -17.51007 -17.36561 -17.03471 -16.97159 -16.69537 -16.48284 -16.08031 -15.87700 -15.65841 -15.27090 -15.11511 -15.01351 -14.86696 -14.68918 -14.25414 -13.86792 -13.38693 -13.35655 -13.25068 -13.09863 -13.03636 -12.96028 -12.80799 -12.71413 -12.60320 -12.59635 -12.56444 -12.24027 -12.08664 -11.94870 -11.89131 -11.84735 -11.72941 -11.42686 -11.30849 -10.78444 -10.75560 -10.58108 -10.52702 -9.50323 -8.67833 -7.87424 -5.32558 1.45377 1.48093 1.54971 1.57846 1.83389 2.50306 2.72768 2.85752 3.26330 3.47525 3.59960 3.70499 3.78774 3.91258 3.94959 3.98893 4.12033 4.16651 4.24811 4.27714 4.38041 4.44278 4.46371 4.49153 4.53673 4.56901 4.60262 4.62943 4.66424 4.68691 4.73262 4.79400 4.86461 4.88751 4.89722 4.96063 5.05687 5.10873 5.11994 5.16027 5.22418 5.28198 5.34678 5.40949 5.45531 5.63109 5.79020 6.28053 6.35563 6.38201 6.42292 7.11199 7.14512 7.85569 8.38601 9.18608 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017706 B = 0.002554 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.978292 B =10960.745483 C =11618.797582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.063 3.937 4 C -0.102 4.102 5 C -0.126 4.126 6 C 0.509 3.491 7 O -0.587 6.587 8 N -0.612 5.612 9 C 0.082 3.918 10 C 0.057 3.943 11 H 0.057 0.943 12 C -0.136 4.136 13 O -0.377 6.377 14 C 0.129 3.871 15 C -0.137 4.137 16 C 0.154 3.846 17 N -0.608 5.608 18 C -0.266 4.266 19 H 0.062 0.938 20 C -0.049 4.049 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.190 3.810 27 C -0.119 4.119 28 C 0.097 3.903 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.251 0.749 48 H 0.052 0.948 49 H 0.001 0.999 50 H 0.065 0.935 51 H 0.075 0.925 52 H 0.079 0.921 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.902 -2.876 -11.847 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.013 4.013 4 C -0.140 4.140 5 C -0.165 4.165 6 C 0.299 3.701 7 O -0.467 6.467 8 N -0.345 5.345 9 C -0.040 4.040 10 C -0.001 4.001 11 H 0.075 0.925 12 C -0.193 4.193 13 O -0.296 6.296 14 C 0.089 3.911 15 C -0.176 4.176 16 C 0.028 3.972 17 N -0.332 5.332 18 C -0.396 4.396 19 H 0.080 0.920 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.201 1.201 26 C 0.064 3.936 27 C -0.158 4.158 28 C -0.027 4.027 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.019 0.981 50 H 0.084 0.916 51 H 0.094 0.906 52 H 0.098 0.902 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -24.292 -3.346 -11.873 27.245 hybrid contribution 1.141 -0.228 0.848 1.440 sum -23.151 -3.574 -11.025 25.890 Atomic orbital electron populations 1.22915 0.79341 1.03643 1.01104 1.87852 1.21656 1.29433 1.95686 1.22596 0.92366 0.84377 1.01980 1.21158 0.93857 0.96233 1.02775 1.21608 0.88323 0.99198 1.07363 1.21402 0.91167 0.82881 0.74612 1.90703 1.76117 1.28060 1.51823 1.48263 1.06031 1.07198 1.72973 1.22754 1.00056 0.80907 1.00306 1.22730 0.81203 0.98396 0.97750 0.92523 1.21713 1.02546 0.92173 1.02889 1.88052 1.21181 1.27595 1.92809 1.21441 0.93596 0.83063 0.93033 1.22315 1.00117 0.99133 0.96030 1.20818 0.84654 0.95795 0.95902 1.44274 1.01177 1.77762 1.09938 1.19439 0.98901 1.15543 1.05756 0.92002 1.25782 1.02068 0.95575 1.01025 1.70187 1.24875 1.16010 1.46620 0.85359 0.78802 0.77512 0.78869 1.20582 1.21780 1.20145 1.20383 0.97658 0.92717 0.82797 1.22016 0.92669 1.01039 1.00116 1.22139 0.80623 1.00906 0.98998 0.92741 0.89161 0.92964 0.91475 0.91080 0.92397 0.92896 0.85839 0.85174 0.84937 0.89028 0.91291 0.87525 0.93526 0.91054 0.92909 0.93592 0.96629 0.94039 0.92918 0.98087 0.91617 0.90606 0.90220 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.80 10.70 -148.98 -1.59 -9.40 16 3 C 0.06 0.81 5.94 71.98 0.43 1.24 16 4 C -0.10 -1.80 4.87 30.59 0.15 -1.65 16 5 C -0.13 -1.64 4.07 29.85 0.12 -1.52 16 6 C 0.51 12.12 7.71 87.66 0.68 12.80 16 7 O -0.59 -19.88 15.45 -3.04 -0.05 -19.93 16 8 N -0.61 -13.97 2.52 -817.47 -2.06 -16.03 16 9 C 0.08 1.27 5.83 86.35 0.50 1.77 16 10 C 0.06 1.27 3.01 30.69 0.09 1.37 16 11 H 0.06 1.36 6.29 -2.39 -0.02 1.34 16 12 C -0.14 -2.35 9.57 71.98 0.69 -1.66 16 13 O -0.38 -12.26 8.65 -148.98 -1.29 -13.54 16 14 C 0.13 4.35 0.68 -10.72 -0.01 4.34 16 15 C -0.14 -4.95 4.33 30.65 0.13 -4.82 16 16 C 0.15 6.75 6.28 86.36 0.54 7.29 16 17 N -0.61 -31.88 2.99 -699.08 -2.09 -33.98 16 18 C -0.27 -15.19 9.59 84.04 0.81 -14.39 16 19 H 0.06 3.47 7.89 -2.91 -0.02 3.44 16 20 C -0.05 -2.80 4.91 84.87 0.42 -2.38 16 21 N -0.93 -56.24 11.19 21.65 0.24 -56.00 16 22 Si 0.97 45.99 29.59 68.60 2.03 48.02 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.19 9.56 5.08 86.36 0.44 10.00 16 27 C -0.12 -4.68 5.10 30.66 0.16 -4.52 16 28 C 0.10 2.80 5.29 86.33 0.46 3.25 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.12 0.99 7.66 -2.39 -0.02 0.97 16 37 H 0.13 0.84 8.01 -2.39 -0.02 0.82 16 38 H 0.13 0.93 6.05 -2.39 -0.01 0.91 16 39 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.07 2.26 6.16 -2.39 -0.01 2.25 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 46 H 0.02 0.70 7.83 -2.38 -0.02 0.69 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 48 H 0.05 2.98 6.03 -2.38 -0.01 2.97 16 49 H 0.00 0.05 7.83 -2.39 -0.02 0.04 16 50 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 51 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 52 H 0.08 2.62 7.07 -2.39 -0.02 2.61 16 53 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -77.62 404.80 2.90 -74.72 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.87 Total: 13.50 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.85 Total: 12.64 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -3.91 Total: -106.01 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -2.93 Total: -42.87 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -77.62 2.90 -74.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111536914.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.261 kcal (2) G-P(sol) polarization free energy of solvation -77.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds