Wall clock time and date at job start Wed Apr 1 2020 00:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99887 * 2 1 4 4 H 1.08996 * 109.46947 * 329.99651 * 3 2 1 5 5 C 1.52993 * 109.47372 * 90.00151 * 3 2 1 6 6 C 1.53005 * 109.46737 * 210.00137 * 3 2 1 7 7 C 1.50693 * 109.47420 * 64.99864 * 6 3 2 8 8 O 1.21291 * 120.00199 * 359.97438 * 7 6 3 9 9 N 1.34778 * 120.00547 * 180.02562 * 7 6 3 10 10 C 1.47150 * 120.98234 * 359.97438 * 9 7 6 11 11 C 1.53302 * 108.37182 * 129.13274 * 10 9 7 12 12 H 1.08999 * 109.51113 * 292.42387 * 11 10 9 13 13 C 1.53004 * 109.51222 * 172.27866 * 11 10 9 14 14 O 1.42964 * 109.22777 * 52.35121 * 11 10 9 15 15 C 1.42891 * 114.20975 * 297.50894 * 14 11 10 16 16 C 1.52974 * 109.56336 * 302.51887 * 15 14 11 17 17 C 1.53195 * 109.35368 * 300.95772 * 16 15 14 18 18 N 1.46934 * 108.77236 * 305.43248 * 17 16 15 19 19 C 1.36939 * 120.63652 * 233.64512 * 18 17 16 20 20 H 1.08004 * 119.99857 * 152.30797 * 19 18 17 21 21 C 1.38813 * 120.00001 * 332.29644 * 19 18 17 22 22 N 1.31614 * 120.00226 * 342.59728 * 21 19 18 23 23 Si 1.86805 * 119.99758 * 162.59615 * 21 19 18 24 24 H 1.48492 * 109.47331 * 94.35438 * 23 21 19 25 25 H 1.48501 * 109.47043 * 214.35270 * 23 21 19 26 26 H 1.48504 * 109.46913 * 334.35055 * 23 21 19 27 27 C 1.46923 * 118.72256 * 53.66418 * 18 17 16 28 28 C 1.53002 * 109.54798 * 182.21504 * 15 14 11 29 29 C 1.47146 * 120.98918 * 179.72132 * 9 7 6 30 30 H 1.09000 * 109.47569 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47421 * 300.00251 * 1 2 3 32 32 H 1.08999 * 109.47399 * 60.00351 * 1 2 3 33 33 H 1.09005 * 109.47249 * 59.99702 * 5 3 2 34 34 H 1.09001 * 109.47106 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47374 * 299.99931 * 5 3 2 36 36 H 1.09003 * 109.47060 * 305.00049 * 6 3 2 37 37 H 1.09000 * 109.47136 * 185.00119 * 6 3 2 38 38 H 1.08999 * 109.68786 * 248.85036 * 10 9 7 39 39 H 1.09003 * 109.68487 * 9.41320 * 10 9 7 40 40 H 1.09008 * 109.46979 * 59.99953 * 13 11 10 41 41 H 1.08999 * 109.46802 * 179.97438 * 13 11 10 42 42 H 1.09002 * 109.46923 * 300.00060 * 13 11 10 43 43 H 1.09001 * 109.49254 * 60.92167 * 16 15 14 44 44 H 1.09002 * 109.49556 * 180.99247 * 16 15 14 45 45 H 1.08995 * 109.59438 * 185.63722 * 17 16 15 46 46 H 1.09000 * 109.69984 * 65.28179 * 17 16 15 47 47 H 0.97003 * 120.00046 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.59214 * 186.54265 * 27 18 17 49 49 H 1.08998 * 109.70357 * 66.18383 * 27 18 17 50 50 H 1.09000 * 109.49331 * 179.00589 * 28 15 14 51 51 H 1.08995 * 109.49054 * 299.06450 * 28 15 14 52 52 H 1.08997 * 109.68180 * 350.47197 * 29 9 7 53 53 H 1.09002 * 109.67697 * 111.01948 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5139 5 6 2.2176 1.7714 1.4424 6 6 3.3588 1.2632 -0.7213 7 6 3.1416 0.9235 -2.1733 8 8 2.0186 0.7334 -2.5902 9 7 4.1952 0.8299 -3.0086 10 6 5.5668 1.0556 -2.5259 11 6 6.4357 -0.1271 -2.9690 12 1 6.1220 -1.0274 -2.4405 13 6 7.9026 0.1687 -2.6502 14 8 6.2829 -0.3222 -4.3770 15 6 4.9547 -0.6601 -4.7810 16 6 4.5043 -1.9275 -4.0522 17 6 5.4670 -3.0724 -4.3829 18 7 5.5511 -3.2126 -5.8431 19 6 5.3173 -4.4214 -6.4427 20 1 4.9419 -4.4585 -7.4547 21 6 5.5629 -5.5989 -5.7499 22 7 6.3245 -5.5843 -4.6766 23 14 4.8123 -7.2042 -6.3409 24 1 5.7837 -7.9140 -7.2113 25 1 4.4816 -8.0564 -5.1706 26 1 3.5749 -6.9182 -7.1105 27 6 5.8914 -2.0311 -6.6474 28 6 4.9240 -0.8976 -6.2922 29 6 4.0085 0.4936 -4.4288 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.8829 1.0775 1.9563 34 1 2.6614 2.7670 1.4424 35 1 1.2569 1.8015 1.9563 36 1 3.9930 0.5051 -0.2618 37 1 3.8427 2.2369 -0.6444 38 1 5.9588 1.9791 -2.9523 39 1 5.5667 1.1239 -1.4381 40 1 8.0176 0.3217 -1.5770 41 1 8.5197 -0.6728 -2.9650 42 1 8.2156 1.0679 -3.1809 43 1 4.5071 -1.7491 -2.9769 44 1 3.4977 -2.1941 -4.3744 45 1 5.0951 -3.9999 -3.9475 46 1 6.4549 -2.8499 -3.9797 47 1 6.4958 -6.4072 -4.1923 48 1 5.7996 -2.2713 -7.7067 49 1 6.9135 -1.7208 -6.4304 50 1 3.9142 -1.1725 -6.5967 51 1 5.2248 0.0133 -6.8096 52 1 2.9766 0.1876 -4.6011 53 1 4.2423 1.3615 -5.0454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111538445.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:13 Heat of formation + Delta-G solvation = -121.274315 kcal Electronic energy + Delta-G solvation = -32713.847132 eV Core-core repulsion = 28585.626025 eV Total energy + Delta-G solvation = -4128.221108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.88408 -40.29586 -38.78035 -37.92419 -35.72762 -35.15171 -33.83791 -33.13965 -31.83363 -31.24480 -29.69742 -28.14003 -27.46293 -27.17135 -25.71813 -24.21268 -23.26371 -22.59215 -21.95073 -20.56014 -20.01874 -18.89425 -18.24512 -17.84095 -17.42425 -16.98243 -16.84627 -16.42783 -16.13125 -15.89643 -15.88914 -15.66277 -15.29047 -15.02087 -14.88708 -14.68871 -14.56380 -13.88876 -13.79489 -13.48554 -13.36579 -13.30985 -13.16077 -13.09773 -12.95737 -12.92841 -12.81073 -12.80693 -12.62630 -12.54186 -12.30320 -12.27116 -12.02456 -11.90678 -11.75011 -11.63471 -11.42202 -11.27057 -10.79361 -10.73123 -10.54164 -10.50991 -9.47810 -8.68347 -7.88761 -5.33324 1.43448 1.45384 1.55504 1.62009 1.90607 2.49225 2.72100 2.89615 3.25651 3.44683 3.60396 3.69815 3.79976 3.85346 3.90437 3.95762 4.13112 4.20115 4.25307 4.30653 4.41182 4.44575 4.45103 4.51253 4.53675 4.59774 4.63109 4.67157 4.69057 4.70774 4.78205 4.81993 4.84192 4.89607 4.93749 4.96465 5.03888 5.05039 5.12937 5.16451 5.31500 5.33015 5.35125 5.39619 5.46153 5.62351 5.69314 6.31085 6.35768 6.38405 6.40022 7.13134 7.15800 7.85067 8.38124 9.17802 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011950 B = 0.003551 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.583970 B = 7882.393003 C = 8976.414707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.407 6.407 3 C 0.092 3.908 4 H 0.058 0.942 5 C -0.166 4.166 6 C -0.135 4.135 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.616 5.616 10 C 0.084 3.916 11 C 0.059 3.941 12 H 0.041 0.959 13 C -0.134 4.134 14 O -0.373 6.373 15 C 0.126 3.874 16 C -0.141 4.141 17 C 0.197 3.803 18 N -0.609 5.609 19 C -0.264 4.264 20 H 0.068 0.932 21 C -0.052 4.052 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.271 1.271 27 C 0.150 3.850 28 C -0.110 4.110 29 C 0.099 3.901 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.044 0.956 45 H 0.044 0.956 46 H -0.002 1.002 47 H 0.249 0.751 48 H 0.055 0.945 49 H 0.017 0.983 50 H 0.071 0.929 51 H 0.092 0.908 52 H 0.077 0.923 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.464 21.336 11.809 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.326 6.326 3 C 0.034 3.966 4 H 0.076 0.924 5 C -0.223 4.223 6 C -0.174 4.174 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.349 5.349 10 C -0.038 4.038 11 C 0.001 3.999 12 H 0.059 0.941 13 C -0.191 4.191 14 O -0.293 6.293 15 C 0.086 3.914 16 C -0.181 4.181 17 C 0.071 3.929 18 N -0.333 5.333 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.195 1.195 27 C 0.025 3.975 28 C -0.149 4.149 29 C -0.025 4.025 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.035 0.965 50 H 0.089 0.911 51 H 0.111 0.889 52 H 0.095 0.905 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.753 20.971 11.546 24.232 hybrid contribution -0.684 -1.480 -0.250 1.649 sum -4.438 19.491 11.296 22.961 Atomic orbital electron populations 1.22731 0.80403 1.02734 1.00002 1.87871 1.20762 1.28820 1.95171 1.22007 0.93395 0.84739 0.96435 0.92385 1.22239 1.02983 1.02754 0.94365 1.22012 0.99495 1.06509 0.89396 1.21293 0.83661 0.75720 0.89272 1.90663 1.24777 1.51550 1.78612 1.48262 1.07673 1.69606 1.09319 1.22703 0.79727 0.98904 1.02447 1.22655 0.98040 0.96764 0.82468 0.94107 1.21696 0.91581 1.02465 1.03379 1.87977 1.28151 1.89805 1.23344 1.21524 0.82750 0.91705 0.95434 1.22421 0.99476 0.97260 0.98926 1.20279 0.93886 0.94757 0.84010 1.44299 1.80912 1.05830 1.02244 1.19547 1.36091 0.84147 0.99656 0.91475 1.25798 0.98872 1.00918 0.99107 1.70199 1.38923 1.27049 1.21851 0.85289 0.78571 0.79714 0.77071 1.20916 1.21928 1.19541 1.20886 0.95343 0.86742 0.94574 1.21891 1.00793 0.99785 0.92449 1.22164 1.00208 0.97840 0.82240 0.90064 0.92374 0.94942 0.91542 0.89057 0.92061 0.87103 0.83703 0.88211 0.85786 0.88005 0.93758 0.90416 0.92883 0.93737 0.93795 0.98378 0.94207 0.92628 0.96544 0.91087 0.88927 0.90466 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.82 113.37 1.23 2.06 16 2 O -0.41 -10.80 9.58 -135.19 -1.29 -12.10 16 3 C 0.09 1.78 2.27 30.59 0.07 1.84 16 4 H 0.06 1.20 7.60 -2.39 -0.02 1.18 16 5 C -0.17 -2.02 9.53 71.98 0.69 -1.33 16 6 C -0.13 -2.32 3.78 29.85 0.11 -2.21 16 7 C 0.51 13.69 7.59 87.65 0.67 14.36 16 8 O -0.58 -20.45 14.89 10.73 0.16 -20.29 16 9 N -0.62 -15.58 2.52 -817.34 -2.06 -17.64 16 10 C 0.08 1.54 5.83 86.36 0.50 2.05 16 11 C 0.06 1.54 3.02 30.70 0.09 1.63 16 12 H 0.04 1.29 6.29 -2.39 -0.02 1.28 16 13 C -0.13 -2.70 9.57 71.98 0.69 -2.01 16 14 O -0.37 -12.54 8.65 -148.98 -1.29 -13.83 16 15 C 0.13 4.37 0.68 -10.70 -0.01 4.36 16 16 C -0.14 -5.98 4.33 30.65 0.13 -5.85 16 17 C 0.20 10.20 5.08 86.36 0.44 10.64 16 18 N -0.61 -32.43 2.99 -699.07 -2.09 -34.52 16 19 C -0.26 -15.23 9.59 84.03 0.81 -14.43 16 20 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 21 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 22 N -0.93 -57.46 11.19 21.65 0.24 -57.22 16 23 Si 0.97 46.65 29.59 68.60 2.03 48.68 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 27 C 0.15 6.57 6.28 86.36 0.54 7.11 16 28 C -0.11 -3.86 5.10 30.66 0.16 -3.71 16 29 C 0.10 2.91 5.30 86.36 0.46 3.36 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 0.96 7.87 -2.38 -0.02 0.94 16 32 H 0.03 0.78 8.08 -2.39 -0.02 0.76 16 33 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.73 7.87 -2.39 -0.02 0.72 16 36 H 0.11 1.77 7.66 -2.39 -0.02 1.75 16 37 H 0.15 1.25 8.01 -2.39 -0.02 1.23 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.12 1.41 6.05 -2.39 -0.01 1.39 16 40 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 2.17 6.16 -2.39 -0.01 2.15 16 44 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.04 2.60 6.04 -2.39 -0.01 2.59 16 46 H 0.00 -0.10 7.83 -2.39 -0.02 -0.12 16 47 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 48 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 49 H 0.02 0.76 7.83 -2.39 -0.02 0.74 16 50 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 51 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 52 H 0.08 2.61 7.07 -2.39 -0.02 2.59 16 53 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -78.12 402.45 3.55 -74.57 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.87 Total: 17.04 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 6.99 Total: 15.29 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.91 Total: -109.38 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -2.42 Total: -46.21 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -78.12 3.55 -74.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111538445.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.701 kcal (2) G-P(sol) polarization free energy of solvation -78.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds