Wall clock time and date at job start Wed Apr 1 2020 00:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00033 * 2 1 4 4 H 1.08997 * 109.47480 * 29.99669 * 3 2 1 5 5 C 1.52998 * 109.46989 * 269.99999 * 3 2 1 6 6 C 1.52999 * 109.47216 * 150.00444 * 3 2 1 7 7 C 1.50705 * 109.46627 * 294.99409 * 6 3 2 8 8 O 1.21276 * 120.00128 * 0.02562 * 7 6 3 9 9 N 1.34774 * 119.99593 * 180.02562 * 7 6 3 10 10 C 1.47149 * 120.99172 * 0.02562 * 9 7 6 11 11 C 1.53289 * 108.38073 * 129.41347 * 10 9 7 12 12 H 1.09003 * 109.55020 * 292.39194 * 11 10 9 13 13 C 1.52998 * 109.51310 * 172.27225 * 11 10 9 14 14 O 1.42967 * 109.23259 * 52.34562 * 11 10 9 15 15 C 1.42905 * 114.20325 * 297.51144 * 14 11 10 16 16 C 1.52984 * 109.55762 * 302.53198 * 15 14 11 17 17 C 1.53192 * 109.34792 * 300.96588 * 16 15 14 18 18 N 1.46937 * 108.77435 * 305.43004 * 17 16 15 19 19 C 1.36930 * 120.63982 * 233.64236 * 18 17 16 20 20 H 1.07995 * 120.00315 * 27.70082 * 19 18 17 21 21 C 1.38814 * 119.99879 * 207.69613 * 19 18 17 22 22 N 1.31619 * 120.00128 * 17.38071 * 21 19 18 23 23 Si 1.86806 * 119.99889 * 197.37252 * 21 19 18 24 24 H 1.48495 * 109.47332 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46919 * 120.00333 * 23 21 19 26 26 H 1.48507 * 109.46950 * 240.00319 * 23 21 19 27 27 C 1.46928 * 118.72073 * 53.66692 * 18 17 16 28 28 C 1.52992 * 109.54518 * 182.23010 * 15 14 11 29 29 C 1.47160 * 120.98649 * 180.02562 * 9 7 6 30 30 H 1.09000 * 109.46928 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46959 * 300.00100 * 1 2 3 32 32 H 1.08999 * 109.47103 * 60.00042 * 1 2 3 33 33 H 1.09000 * 109.47151 * 59.99949 * 5 3 2 34 34 H 1.08998 * 109.47283 * 179.97438 * 5 3 2 35 35 H 1.09004 * 109.47353 * 300.00333 * 5 3 2 36 36 H 1.09006 * 109.47071 * 175.00212 * 6 3 2 37 37 H 1.08990 * 109.47594 * 54.99391 * 6 3 2 38 38 H 1.09001 * 109.68543 * 9.68726 * 10 9 7 39 39 H 1.09004 * 109.68470 * 249.13662 * 10 9 7 40 40 H 1.08998 * 109.47188 * 300.24514 * 13 11 10 41 41 H 1.08999 * 109.47290 * 180.23944 * 13 11 10 42 42 H 1.09002 * 109.47452 * 60.24521 * 13 11 10 43 43 H 1.08994 * 109.49514 * 60.92907 * 16 15 14 44 44 H 1.09003 * 109.49162 * 181.00307 * 16 15 14 45 45 H 1.08997 * 109.59242 * 185.64489 * 17 16 15 46 46 H 1.08999 * 109.70622 * 65.28544 * 17 16 15 47 47 H 0.96997 * 119.99910 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.58970 * 186.54422 * 27 18 17 49 49 H 1.09004 * 109.70359 * 66.18193 * 27 18 17 50 50 H 1.09001 * 109.48935 * 178.99987 * 28 15 14 51 51 H 1.08996 * 109.49351 * 299.05080 * 28 15 14 52 52 H 1.09000 * 109.68058 * 110.74353 * 29 9 7 53 53 H 1.09006 * 109.70582 * 350.22452 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3590 1.2632 0.7211 7 6 3.1416 0.9237 2.1733 8 8 2.0187 0.7336 2.5901 9 7 4.1952 0.8311 3.0086 10 6 5.5668 1.0579 2.5262 11 6 6.2468 2.0663 3.4592 12 1 5.7723 3.0416 3.3503 13 6 7.7297 2.1765 3.0990 14 8 6.1158 1.6198 4.8110 15 6 4.7656 1.5336 5.2713 16 6 4.0885 2.8982 5.1306 17 6 4.8631 3.9360 5.9490 18 7 4.9765 3.4575 7.3337 19 6 4.5710 4.2435 8.3790 20 1 3.7926 4.9777 8.2324 21 6 5.1603 4.0966 9.6272 22 7 6.3130 3.4716 9.7413 23 14 4.3175 4.7863 11.1450 24 1 3.0428 5.4379 10.7504 25 1 4.0346 3.6833 12.0982 26 1 5.2048 5.7853 11.7930 27 6 5.5338 2.1196 7.5750 28 6 4.7518 1.1016 6.7389 29 6 4.0082 0.5004 4.4303 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.2569 1.8014 -1.9563 34 1 2.6606 2.7672 -1.4425 35 1 2.8829 1.0773 -1.9564 36 1 3.8427 2.2370 0.6442 37 1 3.9931 0.5051 0.2617 38 1 5.5382 1.4571 1.5124 39 1 6.1194 0.1184 2.5358 40 1 8.2032 1.2007 3.2064 41 1 8.2134 2.8905 3.7655 42 1 7.8289 2.5170 2.0682 43 1 4.0810 3.1941 4.0817 44 1 3.0643 2.8356 5.4985 45 1 4.3295 4.8862 5.9334 46 1 5.8588 4.0691 5.5258 47 1 6.7246 3.3687 10.6136 48 1 5.4427 1.8711 8.6323 49 1 6.5842 2.1012 7.2844 50 1 3.7224 1.0534 7.0941 51 1 5.2156 0.1198 6.8335 52 1 4.4025 -0.4959 4.6303 53 1 2.9472 0.5317 4.6784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111538446.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:19 Heat of formation + Delta-G solvation = -100.251631 kcal Electronic energy + Delta-G solvation = -32457.913315 eV Core-core repulsion = 28330.603819 eV Total energy + Delta-G solvation = -4127.309496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.72970 -39.18949 -37.83750 -36.36332 -34.54228 -33.62764 -32.96642 -31.58517 -30.14995 -29.75367 -28.64606 -27.04972 -26.63963 -25.99271 -24.03874 -22.65234 -21.87122 -21.61511 -20.65733 -19.12337 -18.91753 -17.29552 -17.04936 -16.93126 -16.37411 -15.68676 -15.36193 -15.19430 -15.03011 -14.85486 -14.59601 -14.24019 -13.80637 -13.56810 -13.47363 -13.29605 -13.16350 -13.01961 -12.84582 -12.58567 -12.37582 -12.34271 -12.21910 -11.92928 -11.79722 -11.59622 -11.56015 -11.39626 -11.28709 -10.99523 -10.94039 -10.79208 -10.62263 -10.31529 -10.22878 -10.04526 -9.82732 -9.80030 -9.68536 -9.46543 -9.29180 -8.41697 -8.33866 -6.61034 -5.74065 -3.15710 2.64100 2.87874 3.39570 3.47594 3.49929 3.59856 3.89718 4.30808 4.49960 4.53314 4.69357 4.85276 4.88696 4.97632 5.08305 5.12165 5.15641 5.19634 5.25901 5.26988 5.32683 5.37017 5.41358 5.42428 5.48882 5.54407 5.60990 5.61537 5.65583 5.66153 5.81072 5.85168 5.91904 5.99858 6.07568 6.18111 6.32236 6.35177 6.38578 6.56723 6.60409 6.70758 6.77597 7.03388 7.04925 7.36504 7.44794 7.64041 7.77637 7.84359 8.17457 8.49641 9.26575 9.90194 10.47953 11.34180 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.002958 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.360691 B = 9463.669251 C =10268.207251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.069 0.931 5 C -0.175 4.175 6 C -0.140 4.140 7 C 0.518 3.482 8 O -0.533 6.533 9 N -0.613 5.613 10 C 0.079 3.921 11 C 0.069 3.931 12 H 0.066 0.934 13 C -0.142 4.142 14 O -0.353 6.353 15 C 0.120 3.880 16 C -0.151 4.151 17 C 0.153 3.847 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.179 3.821 28 C -0.126 4.126 29 C 0.089 3.911 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.020 0.980 47 H 0.252 0.748 48 H 0.086 0.914 49 H 0.027 0.973 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.069 0.931 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -5.702 -22.157 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.087 0.913 5 C -0.232 4.232 6 C -0.180 4.180 7 C 0.307 3.693 8 O -0.410 6.410 9 N -0.347 5.347 10 C -0.045 4.045 11 C 0.010 3.990 12 H 0.084 0.916 13 C -0.199 4.199 14 O -0.272 6.272 15 C 0.080 3.920 16 C -0.191 4.191 17 C 0.026 3.974 18 N -0.313 5.313 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.053 3.947 28 C -0.166 4.166 29 C -0.033 4.033 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.068 0.932 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.076 0.924 52 H 0.087 0.913 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.380 -6.033 -21.662 22.739 hybrid contribution -0.675 0.558 0.556 1.037 sum -4.055 -5.475 -21.106 22.179 Atomic orbital electron populations 1.22694 0.81014 1.02407 0.99747 1.87876 1.19817 1.26972 1.94953 1.21786 0.93576 0.85900 0.94595 0.91332 1.22301 1.02601 1.01659 0.96653 1.21879 0.99094 1.04199 0.92783 1.20476 0.84303 0.76760 0.87793 1.90679 1.22930 1.49729 1.77619 1.48153 1.06427 1.70198 1.09927 1.22529 0.82619 1.00639 0.98665 1.22384 0.96734 0.96324 0.83545 0.91648 1.21701 0.93768 1.03256 1.01224 1.88075 1.25998 1.87125 1.25992 1.21741 0.81647 0.93914 0.94693 1.22507 1.00689 0.96544 0.99314 1.20758 0.96224 0.93996 0.86377 1.44041 1.73694 1.13505 1.00085 1.19217 1.13626 1.16594 0.88599 0.91792 1.25025 0.95418 1.00427 0.98809 1.70054 1.15120 1.46515 1.22840 0.86262 0.79043 0.78271 0.83443 1.20317 1.21581 1.21793 1.20672 0.93506 0.81947 0.98588 1.22202 1.02264 1.00392 0.91749 1.22452 1.02903 0.98651 0.79289 0.90069 0.93486 0.94697 0.92171 0.91429 0.91680 0.87757 0.88132 0.89393 0.90629 0.91793 0.91063 0.91404 0.93226 0.91471 0.93238 0.96168 0.93742 0.89561 0.95442 0.91196 0.92374 0.91257 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.82 101.05 1.09 1.47 16 2 O -0.38 -4.58 9.58 -49.66 -0.48 -5.05 16 3 C 0.10 1.00 2.27 -26.73 -0.06 0.94 16 4 H 0.07 0.75 7.60 -51.93 -0.39 0.35 16 5 C -0.17 -1.24 9.53 37.16 0.35 -0.89 16 6 C -0.14 -1.33 3.78 -27.88 -0.11 -1.43 16 7 C 0.52 7.09 7.59 -10.98 -0.08 7.00 16 8 O -0.53 -9.18 14.89 -8.87 -0.13 -9.32 16 9 N -0.61 -8.17 2.52 -172.30 -0.43 -8.60 16 10 C 0.08 0.83 5.83 -3.54 -0.02 0.81 16 11 C 0.07 0.88 3.01 -26.58 -0.08 0.80 16 12 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 13 C -0.14 -1.48 9.57 37.16 0.36 -1.13 16 14 O -0.35 -6.02 8.65 -35.23 -0.30 -6.32 16 15 C 0.12 2.07 0.68 -90.50 -0.06 2.01 16 16 C -0.15 -2.75 4.33 -26.64 -0.12 -2.87 16 17 C 0.15 3.30 6.28 -3.70 -0.02 3.27 16 18 N -0.59 -15.01 2.99 -172.31 -0.52 -15.52 16 19 C -0.25 -6.97 9.59 -15.06 -0.14 -7.11 16 20 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 23 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.18 4.33 5.08 -3.71 -0.02 4.31 16 28 C -0.13 -2.46 5.10 -26.63 -0.14 -2.60 16 29 C 0.09 1.38 5.29 -3.55 -0.02 1.36 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.51 8.09 -51.92 -0.42 0.09 16 32 H 0.03 0.27 7.87 -51.93 -0.41 -0.13 16 33 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 37 H 0.10 0.82 8.02 -51.93 -0.42 0.41 16 38 H 0.09 0.66 6.05 -51.93 -0.31 0.34 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.82 6.16 -51.93 -0.32 0.50 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 46 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.09 2.33 6.03 -51.93 -0.31 2.02 16 49 H 0.03 0.72 7.83 -51.93 -0.41 0.31 16 50 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 52 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 53 H 0.10 1.63 7.08 -51.93 -0.37 1.26 16 LS Contribution 402.44 15.07 6.06 6.06 Total: -1.00 -33.19 402.44 -8.87 -42.06 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -9.51 Total: -0.36 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 0.85 Total: 5.92 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.33 Total: -49.86 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.91 Total: -20.69 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.19 -8.87 -42.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111538446.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.193 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds