Wall clock time and date at job start Wed Apr 1 2020 00:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99669 * 2 1 4 4 H 1.08994 * 109.47266 * 29.99082 * 3 2 1 5 5 C 1.53006 * 109.46779 * 269.99643 * 3 2 1 6 6 C 1.52992 * 109.47150 * 150.00049 * 3 2 1 7 7 C 1.50703 * 109.47172 * 294.99387 * 6 3 2 8 8 O 1.21276 * 119.99539 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99953 * 179.97438 * 7 6 3 10 10 C 1.47151 * 120.98688 * 359.72036 * 9 7 6 11 11 C 1.52882 * 108.59713 * 230.55090 * 10 9 7 12 12 H 1.08997 * 109.36437 * 67.78402 * 11 10 9 13 13 C 1.53003 * 109.61775 * 187.85781 * 11 10 9 14 14 O 1.42968 * 109.30954 * 307.89593 * 11 10 9 15 15 C 1.42896 * 114.20629 * 62.35491 * 14 11 10 16 16 C 1.52987 * 109.55963 * 57.46716 * 15 14 11 17 17 C 1.53201 * 109.34641 * 59.04484 * 16 15 14 18 18 N 1.46933 * 108.77357 * 54.56756 * 17 16 15 19 19 C 1.36941 * 120.63888 * 126.35304 * 18 17 16 20 20 H 1.08000 * 119.99646 * 207.66044 * 19 18 17 21 21 C 1.38809 * 119.99900 * 27.66656 * 19 18 17 22 22 N 1.31618 * 120.00379 * 17.37688 * 21 19 18 23 23 Si 1.86805 * 119.99600 * 197.38471 * 21 19 18 24 24 H 1.48497 * 109.47147 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47390 * 119.99992 * 23 21 19 26 26 H 1.48507 * 109.46580 * 239.99556 * 23 21 19 27 27 C 1.46929 * 118.71962 * 306.33424 * 18 17 16 28 28 C 1.52992 * 109.55070 * 177.77465 * 15 14 11 29 29 C 1.47152 * 120.98222 * 180.02562 * 9 7 6 30 30 H 1.08999 * 109.47189 * 60.00663 * 1 2 3 31 31 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46995 * 300.00265 * 1 2 3 33 33 H 1.08998 * 109.47289 * 179.97438 * 5 3 2 34 34 H 1.09006 * 109.47312 * 300.00160 * 5 3 2 35 35 H 1.09006 * 109.47031 * 60.00084 * 5 3 2 36 36 H 1.09000 * 109.47315 * 54.99657 * 6 3 2 37 37 H 1.08999 * 109.47142 * 174.99481 * 6 3 2 38 38 H 1.08999 * 109.68689 * 350.33058 * 10 9 7 39 39 H 1.09005 * 109.68079 * 110.89011 * 10 9 7 40 40 H 1.08996 * 109.46599 * 179.91519 * 13 11 10 41 41 H 1.08995 * 109.47154 * 299.91961 * 13 11 10 42 42 H 1.08998 * 109.47153 * 59.91760 * 13 11 10 43 43 H 1.09004 * 109.49256 * 179.00300 * 16 15 14 44 44 H 1.08998 * 109.49720 * 299.08355 * 16 15 14 45 45 H 1.08997 * 109.58790 * 294.78458 * 17 16 15 46 46 H 1.09000 * 109.58775 * 174.35480 * 17 16 15 47 47 H 0.96997 * 120.00269 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58257 * 293.88034 * 27 18 17 49 49 H 1.08998 * 109.58454 * 173.46289 * 27 18 17 50 50 H 1.09000 * 109.49261 * 60.91591 * 28 15 14 51 51 H 1.08998 * 109.49210 * 180.99367 * 28 15 14 52 52 H 1.09001 * 109.67857 * 249.22747 * 29 9 7 53 53 H 1.08992 * 109.68007 * 9.77747 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2177 1.7714 -1.4426 6 6 3.3588 1.2634 0.7212 7 6 3.1415 0.9239 2.1733 8 8 2.0186 0.7338 2.5901 9 7 4.1952 0.8304 3.0085 10 6 5.5674 1.0496 2.5244 11 6 6.4368 -0.1244 2.9750 12 1 6.1245 -1.0276 2.4507 13 6 7.9038 0.1704 2.6557 14 8 6.2833 -0.3129 4.3839 15 6 4.9550 -0.6503 4.7886 16 6 4.5065 -1.9215 4.0652 17 6 5.4701 -3.0639 4.4019 18 7 5.5533 -3.1973 5.8628 19 6 5.3203 -4.4035 6.4678 20 1 4.9448 -4.4363 7.4799 21 6 5.5670 -5.5839 5.7804 22 7 6.3284 -5.5736 4.7068 23 14 4.8180 -7.1872 6.3788 24 1 4.0088 -6.9310 7.5973 25 1 3.9487 -7.7543 5.3169 26 1 5.9018 -8.1509 6.6984 27 6 5.8918 -2.0117 6.6619 28 6 4.9236 -0.8809 6.3007 29 6 4.0081 0.4997 4.4301 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 2.6605 2.7673 -1.4427 34 1 2.8830 1.0774 -1.9564 35 1 1.2568 1.8013 -1.9565 36 1 3.9931 0.5053 0.2617 37 1 3.8426 2.2371 0.6442 38 1 5.5678 1.1087 1.4360 39 1 5.9609 1.9760 2.9430 40 1 8.5214 -0.6674 2.9793 41 1 8.0201 0.3140 1.5815 42 1 8.2149 1.0745 3.1789 43 1 3.4999 -2.1877 4.3880 44 1 4.5098 -1.7481 2.9891 45 1 6.4576 -2.8398 3.9986 46 1 5.0994 -3.9938 3.9706 47 1 6.5004 -6.3984 4.2262 48 1 6.9135 -1.7023 6.4418 49 1 5.7995 -2.2472 7.7221 50 1 5.2235 0.0326 6.8142 51 1 3.9138 -1.1553 6.6058 52 1 4.2402 1.3705 5.0432 53 1 2.9766 0.1929 4.6028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111538448.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:26 Heat of formation + Delta-G solvation = -121.325003 kcal Electronic energy + Delta-G solvation = -32711.814040 eV Core-core repulsion = 28583.590735 eV Total energy + Delta-G solvation = -4128.223306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.89378 -40.30024 -38.78081 -37.93327 -35.72937 -35.16157 -33.83796 -33.14752 -31.83509 -31.25096 -29.69749 -28.14342 -27.46565 -27.18161 -25.72094 -24.21173 -23.26397 -22.59328 -21.94964 -20.56387 -20.01749 -18.89534 -18.25036 -17.84193 -17.42919 -16.98762 -16.84956 -16.42687 -16.13390 -15.89931 -15.89181 -15.66312 -15.28501 -15.02312 -14.89088 -14.69028 -14.56722 -13.88918 -13.79817 -13.48565 -13.36623 -13.30891 -13.16013 -13.10547 -12.96210 -12.92904 -12.81410 -12.80839 -12.64937 -12.55349 -12.30292 -12.23397 -12.01093 -11.90746 -11.75089 -11.63534 -11.42224 -11.26946 -10.79526 -10.73189 -10.54884 -10.51235 -9.48300 -8.68682 -7.88775 -5.33518 1.43177 1.45127 1.55835 1.61962 1.90347 2.49005 2.71873 2.89574 3.25485 3.44449 3.60516 3.69995 3.79984 3.85350 3.90375 3.96169 4.12785 4.20014 4.25311 4.30749 4.41055 4.44592 4.45048 4.51207 4.53666 4.59770 4.63065 4.67130 4.69037 4.70759 4.78108 4.81963 4.84257 4.89617 4.93664 4.96451 5.03825 5.04975 5.12874 5.16404 5.31466 5.33000 5.35114 5.39539 5.46095 5.62496 5.69071 6.30974 6.35663 6.38256 6.39900 7.13031 7.15702 7.84870 8.37885 9.17818 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011973 B = 0.003546 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.964595 B = 7895.134118 C = 8985.864431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.407 6.407 3 C 0.092 3.908 4 H 0.058 0.942 5 C -0.166 4.166 6 C -0.135 4.135 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.615 5.615 10 C 0.084 3.916 11 C 0.059 3.941 12 H 0.040 0.960 13 C -0.134 4.134 14 O -0.373 6.373 15 C 0.126 3.874 16 C -0.142 4.142 17 C 0.197 3.803 18 N -0.610 5.610 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.052 4.052 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.289 1.289 27 C 0.150 3.850 28 C -0.110 4.110 29 C 0.099 3.901 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.052 0.948 45 H -0.002 1.002 46 H 0.044 0.956 47 H 0.249 0.751 48 H 0.017 0.983 49 H 0.056 0.944 50 H 0.092 0.908 51 H 0.071 0.929 52 H 0.090 0.910 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 21.335 -11.848 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.326 6.326 3 C 0.034 3.966 4 H 0.076 0.924 5 C -0.223 4.223 6 C -0.174 4.174 7 C 0.301 3.699 8 O -0.456 6.456 9 N -0.348 5.348 10 C -0.038 4.038 11 C 0.001 3.999 12 H 0.058 0.942 13 C -0.191 4.191 14 O -0.293 6.293 15 C 0.086 3.914 16 C -0.181 4.181 17 C 0.071 3.929 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.794 3.206 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.216 1.216 27 C 0.024 3.976 28 C -0.149 4.149 29 C -0.025 4.025 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.063 0.937 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.016 0.984 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.089 0.911 52 H 0.108 0.892 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.765 20.974 -11.575 24.250 hybrid contribution -0.689 -1.486 0.233 1.655 sum -4.455 19.488 -11.342 22.984 Atomic orbital electron populations 1.22732 0.80402 1.02733 1.00004 1.87873 1.20764 1.28818 1.95173 1.22007 0.93397 0.84739 0.96436 0.92384 1.22243 1.02987 1.02748 0.94363 1.22011 0.99493 1.06511 0.89393 1.21289 0.83655 0.75715 0.89272 1.90659 1.24775 1.51534 1.78616 1.48259 1.07620 1.69760 1.09210 1.22613 0.79753 0.99028 1.02397 1.22571 0.98053 0.96851 0.82450 0.94157 1.21691 0.91547 1.02494 1.03368 1.87981 1.28173 1.89871 1.23245 1.21511 0.82752 0.91710 0.95448 1.22431 0.99490 0.97272 0.98925 1.20285 0.93879 0.94790 0.83985 1.44313 1.80957 1.05816 1.02224 1.19581 1.35929 0.84157 0.99610 0.91442 1.25797 0.98887 1.00909 0.99142 1.70203 1.38966 1.26859 1.22025 0.85232 0.77784 0.79805 0.77811 1.18994 1.21917 1.21616 1.20895 0.95356 0.86674 0.94628 1.21889 1.00798 0.99820 0.92408 1.22148 1.00205 0.97909 0.82197 0.92364 0.90065 0.94945 0.89061 0.91534 0.92067 0.87100 0.83705 0.85799 0.88233 0.93739 0.88010 0.90406 0.93735 0.92894 0.98369 0.93778 0.94217 0.96522 0.92593 0.88920 0.91068 0.89209 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.82 113.37 1.23 2.06 16 2 O -0.41 -10.80 9.58 -135.19 -1.30 -12.09 16 3 C 0.09 1.77 2.27 30.59 0.07 1.84 16 4 H 0.06 1.20 7.60 -2.39 -0.02 1.18 16 5 C -0.17 -2.02 9.53 71.98 0.69 -1.33 16 6 C -0.13 -2.32 3.79 29.85 0.11 -2.20 16 7 C 0.51 13.70 7.59 87.66 0.67 14.36 16 8 O -0.58 -20.44 14.89 10.78 0.16 -20.27 16 9 N -0.62 -15.58 2.53 -818.29 -2.07 -17.65 16 10 C 0.08 1.55 5.81 86.22 0.50 2.05 16 11 C 0.06 1.54 3.00 30.56 0.09 1.63 16 12 H 0.04 1.28 6.29 -2.39 -0.02 1.26 16 13 C -0.13 -2.69 9.57 71.98 0.69 -2.00 16 14 O -0.37 -12.53 8.64 -148.98 -1.29 -13.82 16 15 C 0.13 4.37 0.68 -10.73 -0.01 4.36 16 16 C -0.14 -5.99 4.33 30.66 0.13 -5.86 16 17 C 0.20 10.20 5.08 86.36 0.44 10.64 16 18 N -0.61 -32.40 2.99 -699.06 -2.09 -34.50 16 19 C -0.26 -15.12 9.59 84.03 0.81 -14.31 16 20 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 21 C -0.05 -3.04 4.91 84.86 0.42 -2.62 16 22 N -0.93 -57.47 11.19 21.65 0.24 -57.23 16 23 Si 0.97 46.68 29.59 68.60 2.03 48.71 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 27 C 0.15 6.56 6.28 86.36 0.54 7.10 16 28 C -0.11 -3.86 5.10 30.65 0.16 -3.70 16 29 C 0.10 2.90 5.29 86.33 0.46 3.36 16 30 H 0.06 0.96 7.87 -2.39 -0.02 0.94 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.03 0.77 8.08 -2.39 -0.02 0.76 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.73 7.87 -2.38 -0.02 0.71 16 36 H 0.11 1.76 7.65 -2.39 -0.02 1.75 16 37 H 0.15 1.25 8.03 -2.39 -0.02 1.23 16 38 H 0.12 1.42 6.05 -2.39 -0.01 1.40 16 39 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.05 2.16 6.15 -2.39 -0.01 2.15 16 45 H 0.00 -0.10 7.83 -2.39 -0.02 -0.12 16 46 H 0.04 2.62 6.03 -2.39 -0.01 2.60 16 47 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 48 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16 49 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 50 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 51 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 52 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 53 H 0.08 2.60 7.07 -2.39 -0.02 2.59 16 Total: -1.00 -78.10 402.39 3.54 -74.57 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.87 Total: 16.93 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.98 Total: 15.36 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -3.92 Total: -109.38 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -2.42 Total: -46.18 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -78.10 3.54 -74.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111538448.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.760 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds