Wall clock time and date at job start Wed Apr 1 2020 00:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00266 * 2 1 4 4 C 1.52997 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47302 * 54.99246 * 4 3 2 6 6 C 1.52999 * 109.46966 * 294.99905 * 4 3 2 7 7 C 1.50700 * 109.47385 * 174.99852 * 4 3 2 8 8 O 1.21279 * 119.99768 * 14.00886 * 7 4 3 9 9 N 1.34769 * 120.00112 * 194.01208 * 7 4 3 10 10 C 1.47156 * 120.98865 * 3.81189 * 9 7 4 11 11 C 1.53300 * 108.37207 * 129.43007 * 10 9 7 12 12 H 1.08995 * 109.51537 * 292.42225 * 11 10 9 13 13 C 1.53010 * 109.50822 * 172.27657 * 11 10 9 14 14 O 1.42965 * 109.22670 * 52.35602 * 11 10 9 15 15 C 1.42895 * 114.20471 * 297.49800 * 14 11 10 16 16 C 1.52984 * 109.56567 * 302.52988 * 15 14 11 17 17 C 1.53198 * 109.34760 * 300.96148 * 16 15 14 18 18 N 1.46930 * 108.77441 * 305.42643 * 17 16 15 19 19 C 1.36934 * 120.64197 * 233.65463 * 18 17 16 20 20 H 1.08000 * 120.00244 * 152.15679 * 19 18 17 21 21 C 1.38817 * 119.99896 * 332.42829 * 19 18 17 22 22 N 1.31617 * 119.99890 * 166.53099 * 21 19 18 23 23 Si 1.86803 * 119.99935 * 346.53654 * 21 19 18 24 24 H 1.48493 * 109.47163 * 94.75806 * 23 21 19 25 25 H 1.48500 * 109.46696 * 214.75915 * 23 21 19 26 26 H 1.48495 * 109.46808 * 334.75617 * 23 21 19 27 27 C 1.46927 * 118.71534 * 53.92375 * 18 17 16 28 28 C 1.52999 * 109.54726 * 182.22673 * 15 14 11 29 29 C 1.47161 * 120.98857 * 183.83624 * 9 7 4 30 30 H 1.08998 * 109.47105 * 59.99928 * 1 2 3 31 31 H 1.08993 * 109.47788 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47244 * 300.00775 * 1 2 3 33 33 H 1.08992 * 109.47275 * 59.99938 * 3 2 1 34 34 H 1.09007 * 109.46679 * 299.99783 * 3 2 1 35 35 H 1.09007 * 109.47177 * 184.89338 * 6 4 3 36 36 H 1.08998 * 109.47367 * 304.88950 * 6 4 3 37 37 H 1.08999 * 109.47318 * 64.89479 * 6 4 3 38 38 H 1.09005 * 109.68396 * 249.14831 * 10 9 7 39 39 H 1.09005 * 109.68165 * 9.70798 * 10 9 7 40 40 H 1.09003 * 109.46879 * 59.99944 * 13 11 10 41 41 H 1.08997 * 109.46866 * 179.97438 * 13 11 10 42 42 H 1.08997 * 109.47405 * 300.00113 * 13 11 10 43 43 H 1.08995 * 109.49182 * 180.99439 * 16 15 14 44 44 H 1.09003 * 109.50735 * 60.92989 * 16 15 14 45 45 H 1.09001 * 109.58302 * 185.63814 * 17 16 15 46 46 H 1.08999 * 109.58517 * 65.21235 * 17 16 15 47 47 H 0.97000 * 119.99854 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.59046 * 65.85469 * 27 18 17 49 49 H 1.09004 * 109.58786 * 186.28229 * 27 18 17 50 50 H 1.08999 * 109.49472 * 178.99923 * 28 15 14 51 51 H 1.08997 * 109.49712 * 299.05782 * 28 15 14 52 52 H 1.08996 * 109.67479 * 110.71641 * 29 9 7 53 53 H 1.08998 * 109.70063 * 350.19596 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8508 0.5683 -0.8426 6 6 3.9962 0.5363 1.3064 7 6 4.1481 2.5558 -0.1245 8 8 3.4654 3.5429 0.0498 9 7 5.4545 2.6852 -0.4290 10 6 6.2835 1.5064 -0.7266 11 6 7.0253 1.7575 -2.0445 12 1 6.3095 1.7825 -2.8661 13 6 8.0386 0.6360 -2.2822 14 8 7.7091 3.0107 -1.9684 15 6 6.8481 4.1388 -1.8016 16 6 5.8424 4.1905 -2.9533 17 6 6.5976 4.2913 -4.2824 18 7 7.5079 5.4431 -4.2229 19 6 7.4724 6.4113 -5.1906 20 1 7.7708 7.4221 -4.9544 21 6 7.0475 6.0950 -6.4737 22 7 6.7591 7.0549 -7.3268 23 14 6.8850 4.3070 -6.9895 24 1 5.4828 3.8602 -6.7916 25 1 7.2507 4.1700 -8.4223 26 1 7.7925 3.4695 -6.1648 27 6 8.4610 5.5329 -3.1083 28 6 7.6817 5.4217 -1.7890 29 6 6.0946 4.0096 -0.4733 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5140 0.8899 33 1 1.6887 1.8463 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 5.0856 0.5291 1.3442 36 1 3.6072 1.1051 2.1510 37 1 3.6242 -0.4871 1.3553 38 1 7.0041 1.3520 0.0766 39 1 5.6482 0.6261 -0.8248 40 1 7.5170 -0.3197 -2.3356 41 1 8.5653 0.8149 -3.2196 42 1 8.7550 0.6135 -1.4611 43 1 5.1977 5.0612 -2.8343 44 1 5.2356 3.2850 -2.9476 45 1 5.8866 4.4290 -5.0970 46 1 7.1722 3.3796 -4.4462 47 1 6.4618 6.8338 -8.2233 48 1 9.1834 4.7197 -3.1788 49 1 8.9804 6.4903 -3.1479 50 1 7.0225 6.2828 -1.6796 51 1 8.3827 5.3918 -0.9549 52 1 6.7944 4.1069 0.3567 53 1 5.3343 4.7876 -0.4054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111540910.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:38 Heat of formation + Delta-G solvation = -114.529246 kcal Electronic energy + Delta-G solvation = -32786.398526 eV Core-core repulsion = 28658.469907 eV Total energy + Delta-G solvation = -4127.928619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.08618 -40.48341 -38.80722 -38.18963 -35.95014 -35.27161 -34.54095 -33.47200 -32.09951 -31.52661 -29.00369 -28.25911 -27.40452 -26.71650 -25.92185 -24.72468 -23.87741 -23.10371 -21.98879 -20.65443 -19.99073 -18.98777 -18.69133 -17.63949 -17.47211 -17.12060 -17.04905 -16.67483 -16.38934 -16.14142 -15.91733 -15.85269 -15.53674 -15.29521 -14.99244 -14.87512 -14.52584 -14.30914 -14.12994 -13.66887 -13.64620 -13.60547 -13.37793 -13.23577 -13.08974 -12.98123 -12.96944 -12.69975 -12.49263 -12.44480 -12.32595 -12.25148 -12.10179 -11.91604 -11.84671 -11.58404 -11.39050 -11.37714 -10.95096 -10.78987 -10.73969 -10.68782 -9.58158 -8.92903 -8.17729 -5.53361 1.23211 1.35135 1.43692 1.44067 1.68878 2.37235 2.62642 2.74625 3.06904 3.26467 3.39324 3.58078 3.65832 3.75245 3.79067 3.85557 3.91873 4.04833 4.16064 4.22041 4.23889 4.36141 4.40726 4.43447 4.45876 4.50689 4.57421 4.59669 4.60448 4.64062 4.64601 4.69562 4.76652 4.82247 4.84562 4.86056 4.93539 4.94154 4.99230 5.05530 5.07691 5.12575 5.24692 5.27985 5.35432 5.44303 5.84171 6.08167 6.10744 6.22934 6.29614 6.88471 6.97767 7.59127 8.00819 9.02257 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003544 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.203039 B = 7898.124049 C = 8491.635753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.082 3.918 4 C -0.104 4.104 5 H 0.119 0.881 6 C -0.132 4.132 7 C 0.520 3.480 8 O -0.581 6.581 9 N -0.608 5.608 10 C 0.080 3.920 11 C 0.057 3.943 12 H 0.048 0.952 13 C -0.136 4.136 14 O -0.368 6.368 15 C 0.126 3.874 16 C -0.145 4.145 17 C 0.134 3.866 18 N -0.620 5.620 19 C -0.243 4.243 20 H 0.056 0.944 21 C -0.043 4.043 22 N -0.965 5.965 23 Si 0.953 3.047 24 H -0.287 1.287 25 H -0.312 1.312 26 H -0.249 1.249 27 C 0.152 3.848 28 C -0.112 4.112 29 C 0.097 3.903 30 H 0.042 0.958 31 H 0.106 0.894 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.260 0.740 48 H 0.039 0.961 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.099 0.901 52 H 0.096 0.904 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 -20.684 20.696 29.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.005 3.995 4 C -0.125 4.125 5 H 0.137 0.863 6 C -0.189 4.189 7 C 0.310 3.690 8 O -0.461 6.461 9 N -0.340 5.340 10 C -0.042 4.042 11 C -0.002 4.002 12 H 0.066 0.934 13 C -0.194 4.194 14 O -0.288 6.288 15 C 0.086 3.914 16 C -0.184 4.184 17 C 0.009 3.991 18 N -0.345 5.345 19 C -0.372 4.372 20 H 0.074 0.926 21 C -0.237 4.237 22 N -0.612 5.612 23 Si 0.784 3.216 24 H -0.215 1.215 25 H -0.242 1.242 26 H -0.173 1.173 27 C 0.028 3.972 28 C -0.151 4.151 29 C -0.026 4.026 30 H 0.060 0.940 31 H 0.124 0.876 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.117 0.883 52 H 0.114 0.886 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.376 -20.279 20.659 29.277 hybrid contribution -0.932 0.399 -1.190 1.563 sum -5.308 -19.879 19.469 28.326 Atomic orbital electron populations 1.22937 0.79398 1.04127 1.00585 1.87762 1.21352 1.27179 1.95567 1.22136 0.92138 0.84522 1.00686 1.21190 0.94587 0.93010 1.03694 0.86332 1.21712 1.02349 1.01690 0.93140 1.20917 0.81299 0.91599 0.75207 1.90696 1.61374 1.41728 1.52277 1.48165 1.09141 1.08301 1.68401 1.22818 0.95407 0.87979 0.97980 1.22719 0.95734 0.85384 0.96332 0.93444 1.21722 0.98716 0.96082 1.02849 1.88001 1.33258 1.13851 1.93657 1.21514 0.89979 0.87727 0.92216 1.22401 0.98238 1.01209 0.96590 1.21246 0.91875 0.90223 0.95728 1.44467 1.38950 1.24120 1.26968 1.18944 1.39499 0.89793 0.89010 0.92628 1.25957 1.00705 1.01048 0.95953 1.69906 1.50848 1.33398 1.07025 0.85870 0.77780 0.82308 0.75679 1.21464 1.24151 1.17321 1.21053 0.90766 0.99672 0.85723 1.21973 0.99514 0.94311 0.99277 1.22239 0.97340 0.85424 0.97597 0.93977 0.87571 0.93341 0.92854 0.94207 0.90337 0.92838 0.89428 0.87898 0.86147 0.88187 0.93114 0.90348 0.92761 0.91705 0.94399 0.94415 0.93063 0.94321 0.92344 0.91109 0.88282 0.88559 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.30 10.33 -148.98 -1.54 -8.84 16 3 C 0.08 1.66 4.63 71.98 0.33 2.00 16 4 C -0.10 -1.82 2.11 -11.54 -0.02 -1.84 16 5 H 0.12 1.70 6.70 -2.39 -0.02 1.69 16 6 C -0.13 -1.65 8.79 71.98 0.63 -1.02 16 7 C 0.52 12.68 6.93 87.66 0.61 13.28 16 8 O -0.58 -19.11 15.55 -3.03 -0.05 -19.16 16 9 N -0.61 -13.31 2.52 -817.40 -2.06 -15.37 16 10 C 0.08 1.22 4.72 86.35 0.41 1.62 16 11 C 0.06 1.19 3.02 30.70 0.09 1.28 16 12 H 0.05 1.18 6.29 -2.39 -0.02 1.17 16 13 C -0.14 -2.11 9.57 71.99 0.69 -1.43 16 14 O -0.37 -10.21 8.64 -148.98 -1.29 -11.49 16 15 C 0.13 3.74 0.68 -10.71 -0.01 3.73 16 16 C -0.14 -5.30 4.33 30.66 0.13 -5.16 16 17 C 0.13 5.95 3.87 86.36 0.33 6.28 16 18 N -0.62 -30.04 2.80 -698.22 -1.96 -31.99 16 19 C -0.24 -14.19 10.10 84.04 0.85 -13.34 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.04 -2.60 5.37 84.86 0.46 -2.14 16 22 N -0.96 -62.67 13.97 21.65 0.30 -62.36 16 23 Si 0.95 48.56 24.27 68.60 1.67 50.23 16 24 H -0.29 -14.15 6.76 99.48 0.67 -13.47 16 25 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 26 H -0.25 -11.91 5.79 99.48 0.58 -11.33 16 27 C 0.15 5.95 6.31 86.51 0.55 6.49 16 28 C -0.11 -3.44 5.12 30.80 0.16 -3.28 16 29 C 0.10 2.45 5.30 86.34 0.46 2.91 16 30 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.08 0.74 6.84 -2.38 -0.02 0.72 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.94 7.95 -2.39 -0.02 0.93 16 38 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.12 1.20 5.41 -2.38 -0.01 1.19 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 2.19 6.16 -2.39 -0.01 2.18 16 45 H 0.04 1.89 4.08 -2.39 -0.01 1.88 16 46 H 0.04 1.65 6.34 -2.39 -0.02 1.64 16 47 H 0.26 16.10 8.31 -92.71 -0.77 15.32 16 48 H 0.04 1.48 7.82 -2.39 -0.02 1.47 16 49 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 50 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 51 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 52 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 53 H 0.08 2.41 7.06 -2.39 -0.02 2.40 16 Total: -1.00 -76.78 392.47 2.70 -74.08 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.72 Total: 13.95 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.91 Total: 10.98 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.72 Total: -109.73 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -2.87 Total: -39.50 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.67 Total: 50.23 kcal Total: -76.78 2.70 -74.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111540910.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.454 kcal (2) G-P(sol) polarization free energy of solvation -76.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds