Wall clock time and date at job start Wed Apr 1 2020 00:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00194 * 2 1 4 4 C 1.53003 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47332 * 305.00294 * 4 3 2 6 6 C 1.52994 * 109.46928 * 65.00605 * 4 3 2 7 7 C 1.50706 * 109.47031 * 185.00336 * 4 3 2 8 8 O 1.21279 * 119.99640 * 335.54477 * 7 4 3 9 9 N 1.34778 * 119.99853 * 155.55108 * 7 4 3 10 10 C 1.47155 * 120.98992 * 354.76422 * 9 7 4 11 11 C 1.53707 * 108.15418 * 129.38109 * 10 9 7 12 12 H 1.08995 * 109.69625 * 292.58113 * 11 10 9 13 13 C 1.52999 * 109.44061 * 172.40987 * 11 10 9 14 14 O 1.42971 * 109.16015 * 52.57258 * 11 10 9 15 15 C 1.42894 * 114.20033 * 297.38755 * 14 11 10 16 16 C 1.53005 * 109.55320 * 182.23656 * 15 14 11 17 17 C 1.53180 * 109.35216 * 59.07235 * 16 15 14 18 18 N 1.46938 * 108.77542 * 54.58165 * 17 16 15 19 19 C 1.36938 * 120.64104 * 126.28863 * 18 17 16 20 20 H 1.08004 * 119.99649 * 211.64344 * 19 18 17 21 21 C 1.38809 * 120.00355 * 31.64970 * 19 18 17 22 22 N 1.31617 * 120.00138 * 10.18265 * 21 19 18 23 23 Si 1.86798 * 119.99982 * 190.18098 * 21 19 18 24 24 H 1.48500 * 109.47222 * 90.00065 * 23 21 19 25 25 H 1.48503 * 109.47368 * 210.00001 * 23 21 19 26 26 H 1.48497 * 109.47399 * 329.99968 * 23 21 19 27 27 C 1.46918 * 118.70892 * 306.31454 * 18 17 16 28 28 C 1.52988 * 109.56630 * 302.54480 * 15 14 11 29 29 C 1.47152 * 120.98540 * 175.05074 * 9 7 4 30 30 H 1.09000 * 109.47304 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46957 * 299.99592 * 1 2 3 32 32 H 1.09000 * 109.47538 * 59.99410 * 1 2 3 33 33 H 1.09007 * 109.47121 * 60.00633 * 3 2 1 34 34 H 1.08998 * 109.47623 * 300.00469 * 3 2 1 35 35 H 1.08997 * 109.47777 * 64.90314 * 6 4 3 36 36 H 1.09006 * 109.47102 * 184.90185 * 6 4 3 37 37 H 1.09003 * 109.46916 * 304.89638 * 6 4 3 38 38 H 1.09001 * 109.68159 * 249.15793 * 10 9 7 39 39 H 1.08996 * 109.68096 * 9.71325 * 10 9 7 40 40 H 1.09005 * 109.47491 * 300.37647 * 13 11 10 41 41 H 1.09001 * 109.46989 * 60.37559 * 13 11 10 42 42 H 1.09001 * 109.47216 * 180.37868 * 13 11 10 43 43 H 1.08999 * 109.48456 * 179.03731 * 16 15 14 44 44 H 1.08998 * 109.48450 * 299.10512 * 16 15 14 45 45 H 1.09006 * 109.59344 * 294.79627 * 17 16 15 46 46 H 1.09004 * 109.58785 * 174.36559 * 17 16 15 47 47 H 0.96994 * 120.00322 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.59054 * 293.88475 * 27 18 17 49 49 H 1.09001 * 109.70134 * 173.52849 * 27 18 17 50 50 H 1.09001 * 109.48920 * 60.88850 * 28 15 14 51 51 H 1.09007 * 109.49062 * 180.93250 * 28 15 14 52 52 H 1.08998 * 109.68349 * 350.19471 * 29 9 7 53 53 H 1.09006 * 109.67877 * 110.70217 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 1 3.8508 0.5683 0.8427 6 6 3.9962 0.5365 -1.3064 7 6 4.1480 2.5559 0.1246 8 8 3.5240 3.5331 -0.2314 9 7 5.3891 2.6963 0.6308 10 6 6.1209 1.5411 1.1743 11 6 7.5168 1.5128 0.5314 12 1 7.4273 1.2873 -0.5312 13 6 8.3690 0.4395 1.2116 14 8 8.1361 2.7906 0.6978 15 6 7.4483 3.8635 0.0516 16 6 8.2280 5.1649 0.2501 17 6 9.6348 5.0082 -0.3354 18 7 9.5190 4.5812 -1.7366 19 6 10.1455 5.2805 -2.7333 20 1 9.7054 5.3280 -3.7185 21 6 11.3463 5.9283 -2.4777 22 7 11.9842 5.7100 -1.3473 23 14 12.0570 7.1098 -3.7380 24 1 11.5480 8.4797 -3.4744 25 1 13.5388 7.1051 -3.6406 26 1 11.6492 6.6840 -5.1009 27 6 8.7175 3.3897 -2.0474 28 6 7.3205 3.5637 -1.4432 29 6 6.0503 4.0106 0.6622 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.7580 1.1945 -2.1421 36 1 5.0729 0.3707 -1.2700 37 1 3.4860 -0.4178 -1.4384 38 1 6.2137 1.6410 2.2558 39 1 5.5862 0.6220 0.9346 40 1 8.4567 0.6647 2.2745 41 1 7.8963 -0.5344 1.0843 42 1 9.3612 0.4235 0.7605 43 1 7.7113 5.9794 -0.2577 44 1 8.2997 5.3870 1.3148 45 1 10.1849 4.2568 0.2312 46 1 10.1594 5.9624 -0.2864 47 1 12.8234 6.1623 -1.1688 48 1 9.1933 2.5074 -1.6195 49 1 8.6362 3.2732 -3.1281 50 1 6.7473 2.6471 -1.5825 51 1 6.8104 4.3904 -1.9377 52 1 5.4697 4.7276 0.0817 53 1 6.1339 4.3550 1.6930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111540911.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:42 Heat of formation + Delta-G solvation = -120.423577 kcal Electronic energy + Delta-G solvation = -32557.611583 eV Core-core repulsion = 28429.427366 eV Total energy + Delta-G solvation = -4128.184217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.02157 -40.38466 -38.76660 -37.95300 -35.87050 -35.20174 -34.50180 -33.25678 -31.68042 -31.24054 -28.87336 -28.28100 -27.35880 -26.72742 -26.04486 -24.30725 -23.70414 -22.91463 -21.99247 -20.52723 -19.84629 -18.91743 -18.64924 -17.52245 -17.14521 -16.98405 -16.91583 -16.59254 -16.52214 -15.99012 -15.81687 -15.76750 -15.25476 -15.03800 -14.96963 -14.86822 -14.63826 -14.15494 -13.89614 -13.52634 -13.36240 -13.33883 -13.20417 -13.10146 -12.98156 -12.90273 -12.81899 -12.65979 -12.56423 -12.43610 -12.29767 -12.22122 -12.05037 -11.88908 -11.85790 -11.73332 -11.44214 -11.31269 -10.78860 -10.73386 -10.65590 -10.54206 -9.54287 -8.60661 -7.85669 -5.37552 1.44331 1.46123 1.46963 1.56025 1.69965 2.49994 2.71122 2.77871 3.29006 3.41767 3.58103 3.68959 3.76409 3.79734 3.87293 3.91184 3.98448 4.09125 4.17809 4.28388 4.37913 4.44158 4.45565 4.49274 4.49821 4.60486 4.61998 4.63493 4.68022 4.70621 4.74411 4.84600 4.86419 4.86977 4.90930 4.92273 4.97018 5.05922 5.11211 5.15268 5.24471 5.25791 5.32511 5.38846 5.48234 5.64039 5.82323 6.11977 6.25859 6.40737 6.42186 6.98899 7.16876 7.86054 8.40438 9.19759 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.002860 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.024249 B = 9787.101184 C =10266.623785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.084 3.916 4 C -0.103 4.103 5 H 0.126 0.874 6 C -0.135 4.135 7 C 0.522 3.478 8 O -0.580 6.580 9 N -0.607 5.607 10 C 0.078 3.922 11 C 0.061 3.939 12 H 0.059 0.941 13 C -0.137 4.137 14 O -0.375 6.375 15 C 0.128 3.872 16 C -0.119 4.119 17 C 0.191 3.809 18 N -0.608 5.608 19 C -0.265 4.265 20 H 0.061 0.939 21 C -0.047 4.047 22 N -0.933 5.933 23 Si 0.969 3.031 24 H -0.284 1.284 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.155 3.845 28 C -0.138 4.138 29 C 0.098 3.902 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.000 1.000 46 H 0.053 0.947 47 H 0.250 0.750 48 H 0.015 0.985 49 H 0.046 0.954 50 H 0.071 0.929 51 H 0.054 0.946 52 H 0.083 0.917 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.517 -14.833 7.412 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.007 3.993 4 C -0.124 4.124 5 H 0.143 0.857 6 C -0.193 4.193 7 C 0.312 3.688 8 O -0.460 6.460 9 N -0.339 5.339 10 C -0.044 4.044 11 C 0.003 3.997 12 H 0.077 0.923 13 C -0.195 4.195 14 O -0.295 6.295 15 C 0.088 3.912 16 C -0.158 4.158 17 C 0.066 3.934 18 N -0.332 5.332 19 C -0.395 4.395 20 H 0.079 0.921 21 C -0.243 4.243 22 N -0.579 5.579 23 Si 0.797 3.203 24 H -0.211 1.211 25 H -0.219 1.219 26 H -0.195 1.195 27 C 0.029 3.971 28 C -0.177 4.177 29 C -0.025 4.025 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.143 0.857 40 H 0.087 0.913 41 H 0.122 0.878 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.018 0.982 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.033 0.967 49 H 0.065 0.935 50 H 0.090 0.910 51 H 0.073 0.927 52 H 0.101 0.899 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.417 -14.408 7.365 25.276 hybrid contribution 0.466 1.295 -0.796 1.590 sum -18.951 -13.113 6.568 23.963 Atomic orbital electron populations 1.22943 0.79314 1.04116 1.00675 1.87768 1.21427 1.27206 1.95575 1.22116 0.91714 0.84614 1.00899 1.21210 0.94921 0.92907 1.03324 0.85661 1.21698 1.02264 1.01533 0.93786 1.20916 0.80746 0.91484 0.75691 1.90684 1.61920 1.42321 1.51043 1.48185 1.15534 1.09741 1.60412 1.22892 0.92430 0.89289 0.99754 1.22764 0.92536 0.84759 0.99663 0.92283 1.21724 0.99506 0.97101 1.01122 1.88059 1.51512 1.15756 1.74160 1.21480 0.90334 0.88258 0.91167 1.22023 0.98122 0.94584 1.01080 1.20384 0.91873 0.97991 0.83169 1.44227 1.57583 1.27970 1.03391 1.19465 1.00776 1.26334 0.92944 0.92094 1.25915 0.96188 1.02892 0.99290 1.70146 1.16504 1.45150 1.26088 0.85251 0.76939 0.78953 0.79174 1.21101 1.21911 1.19495 1.20806 0.90258 0.88889 0.97126 1.22337 0.98153 1.01273 0.95954 1.22206 0.92645 0.85568 1.02113 0.87694 0.93395 0.93670 0.93153 0.93270 0.93467 0.91060 0.89146 0.88914 0.85651 0.91257 0.87751 0.93262 0.91495 0.90674 0.98185 0.92856 0.94053 0.96739 0.93549 0.91040 0.92713 0.89853 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.86 10.16 -148.98 -1.51 -8.37 16 3 C 0.08 1.58 4.75 71.98 0.34 1.92 16 4 C -0.10 -1.82 2.13 -11.54 -0.02 -1.85 16 5 H 0.13 1.61 6.37 -2.39 -0.02 1.59 16 6 C -0.14 -2.21 9.03 71.98 0.65 -1.56 16 7 C 0.52 13.02 6.82 87.66 0.60 13.62 16 8 O -0.58 -19.11 15.68 -3.03 -0.05 -19.15 16 9 N -0.61 -14.43 2.52 -816.61 -2.05 -16.49 16 10 C 0.08 1.37 5.77 86.49 0.50 1.87 16 11 C 0.06 1.41 3.03 30.83 0.09 1.51 16 12 H 0.06 1.46 6.29 -2.39 -0.02 1.44 16 13 C -0.14 -2.53 9.57 71.98 0.69 -1.84 16 14 O -0.38 -12.30 8.65 -148.98 -1.29 -13.59 16 15 C 0.13 4.29 0.68 -10.71 -0.01 4.28 16 16 C -0.12 -4.62 5.10 30.66 0.16 -4.46 16 17 C 0.19 9.58 5.02 86.36 0.43 10.01 16 18 N -0.61 -31.63 2.98 -699.10 -2.09 -33.72 16 19 C -0.26 -14.99 9.58 84.03 0.81 -14.18 16 20 H 0.06 3.39 7.85 -2.91 -0.02 3.37 16 21 C -0.05 -2.69 5.06 84.86 0.43 -2.26 16 22 N -0.93 -56.10 11.04 21.65 0.24 -55.86 16 23 Si 0.97 45.71 29.57 68.60 2.03 47.74 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C 0.15 6.73 6.28 86.36 0.54 7.28 16 28 C -0.14 -4.93 4.33 30.65 0.13 -4.80 16 29 C 0.10 2.81 5.27 86.34 0.46 3.26 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.05 1.05 8.03 -2.39 -0.02 1.03 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.04 7.79 -2.38 -0.02 1.02 16 37 H 0.09 1.27 7.70 -2.39 -0.02 1.26 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.13 1.39 5.20 -2.39 -0.01 1.38 16 40 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.00 0.00 7.83 -2.38 -0.02 -0.02 16 46 H 0.05 3.01 6.10 -2.38 -0.01 2.99 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.01 0.65 7.83 -2.39 -0.02 0.63 16 49 H 0.05 2.00 7.94 -2.39 -0.02 1.98 16 50 H 0.07 2.24 6.15 -2.39 -0.01 2.23 16 51 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 52 H 0.08 2.66 7.11 -2.39 -0.02 2.65 16 53 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -72.08 401.69 3.19 -68.89 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.87 Total: 16.22 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.04 Total: 14.34 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.90 Total: -106.07 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -2.85 Total: -41.11 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -72.08 3.19 -68.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111540911.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.536 kcal (2) G-P(sol) polarization free energy of solvation -72.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds