Wall clock time and date at job start Wed Apr 1 2020 00:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99943 * 2 1 4 4 C 1.53005 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46938 * 55.00015 * 4 3 2 6 6 C 1.52995 * 109.46885 * 294.99601 * 4 3 2 7 7 C 1.50703 * 109.46702 * 174.99974 * 4 3 2 8 8 O 1.21278 * 120.00491 * 29.30318 * 7 4 3 9 9 N 1.34780 * 119.99576 * 209.30168 * 7 4 3 10 10 C 1.47153 * 120.99062 * 354.90545 * 9 7 4 11 11 C 1.53296 * 108.37545 * 230.61937 * 10 9 7 12 12 H 1.08998 * 109.51275 * 67.57967 * 11 10 9 13 13 C 1.52998 * 109.50885 * 187.67641 * 11 10 9 14 14 O 1.42962 * 109.27073 * 307.62587 * 11 10 9 15 15 C 1.42989 * 114.15401 * 62.45848 * 14 11 10 16 16 C 1.52981 * 109.54992 * 57.52437 * 15 14 11 17 17 C 1.53188 * 109.34927 * 59.01119 * 16 15 14 18 18 N 1.46935 * 108.77429 * 54.57185 * 17 16 15 19 19 C 1.36933 * 120.64070 * 126.35417 * 18 17 16 20 20 H 1.08005 * 120.00049 * 209.26165 * 19 18 17 21 21 C 1.38813 * 120.00155 * 29.26117 * 19 18 17 22 22 N 1.31621 * 119.99996 * 12.52824 * 21 19 18 23 23 Si 1.86799 * 120.00074 * 192.53420 * 21 19 18 24 24 H 1.48499 * 109.47168 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47179 * 119.99831 * 23 21 19 26 26 H 1.48503 * 109.46973 * 239.99899 * 23 21 19 27 27 C 1.46927 * 118.71779 * 306.33321 * 18 17 16 28 28 C 1.52996 * 109.53186 * 177.81009 * 15 14 11 29 29 C 1.47155 * 120.98600 * 174.92890 * 9 7 4 30 30 H 1.09006 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47098 * 299.99459 * 1 2 3 32 32 H 1.09002 * 109.47257 * 60.00469 * 1 2 3 33 33 H 1.08993 * 109.47498 * 60.00020 * 3 2 1 34 34 H 1.09006 * 109.47191 * 299.99849 * 3 2 1 35 35 H 1.09000 * 109.46927 * 185.06773 * 6 4 3 36 36 H 1.08998 * 109.47625 * 305.07009 * 6 4 3 37 37 H 1.08998 * 109.47132 * 65.07079 * 6 4 3 38 38 H 1.09000 * 109.68478 * 110.89309 * 10 9 7 39 39 H 1.09002 * 109.68214 * 350.33984 * 10 9 7 40 40 H 1.09004 * 109.47203 * 59.90240 * 13 11 10 41 41 H 1.09000 * 109.47219 * 179.90127 * 13 11 10 42 42 H 1.09003 * 109.47376 * 299.89988 * 13 11 10 43 43 H 1.09001 * 109.49076 * 178.97526 * 16 15 14 44 44 H 1.09003 * 109.48939 * 299.04569 * 16 15 14 45 45 H 1.08999 * 109.58473 * 294.78368 * 17 16 15 46 46 H 1.09000 * 109.58983 * 174.35755 * 17 16 15 47 47 H 0.96998 * 120.00332 * 180.02562 * 22 21 19 48 48 H 1.09009 * 109.58251 * 293.88521 * 27 18 17 49 49 H 1.08998 * 109.58734 * 173.46291 * 27 18 17 50 50 H 1.09007 * 109.48971 * 60.94079 * 28 15 14 51 51 H 1.08997 * 109.49219 * 180.99252 * 28 15 14 52 52 H 1.08997 * 109.67618 * 249.22134 * 29 9 7 53 53 H 1.08998 * 109.67652 * 9.76645 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8427 6 6 3.9962 0.5365 1.3064 7 6 4.1478 2.5561 -0.1245 8 8 3.5612 3.5238 0.3116 9 7 5.3476 2.7070 -0.7199 10 6 6.1289 1.5391 -1.1568 11 6 7.5530 1.6771 -0.6066 12 1 7.5346 1.5825 0.4791 13 6 8.4387 0.5798 -1.2002 14 8 8.0754 2.9586 -0.9655 15 6 7.3505 4.0611 -0.4145 16 6 7.3235 3.9450 1.1107 17 6 8.7594 3.9331 1.6443 18 7 9.4607 5.1222 1.1412 19 6 10.0921 5.9774 2.0044 20 1 10.1862 7.0241 1.7553 21 6 10.6111 5.4991 3.1997 22 7 10.7206 4.2025 3.3976 23 14 11.1541 6.6956 4.5274 24 1 10.9290 8.0876 4.0615 25 1 10.3676 6.4536 5.7636 26 1 12.5979 6.4969 4.8124 27 6 9.4719 5.3757 -0.3060 28 6 8.0283 5.3720 -0.8183 29 6 5.9153 4.0447 -0.9518 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 5.0855 0.5322 1.3455 36 1 3.6045 1.1034 2.1510 37 1 3.6269 -0.4879 1.3539 38 1 6.1578 1.5034 -2.2459 39 1 5.6730 0.6273 -0.7711 40 1 8.4566 0.6750 -2.2860 41 1 9.4515 0.6796 -0.8100 42 1 8.0389 -0.3969 -0.9277 43 1 6.7864 4.7955 1.5307 44 1 6.8216 3.0205 1.3962 45 1 9.2701 3.0342 1.2989 46 1 8.7444 3.9515 2.7340 47 1 11.0830 3.8682 4.2330 48 1 10.0404 4.5936 -0.8095 49 1 9.9274 6.3461 -0.5035 50 1 8.0276 5.4621 -1.9047 51 1 7.4855 6.2111 -0.3834 52 1 5.9208 4.2609 -2.0201 53 1 5.3189 4.7922 -0.4286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111540912.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:46 Heat of formation + Delta-G solvation = -120.699925 kcal Electronic energy + Delta-G solvation = -32637.025767 eV Core-core repulsion = 28508.829567 eV Total energy + Delta-G solvation = -4128.196200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.01816 -40.38599 -38.77213 -37.96557 -35.87033 -35.24642 -34.53713 -33.12858 -31.81502 -31.21302 -28.86423 -28.29583 -27.39358 -26.72382 -26.05100 -24.27348 -23.74924 -22.92913 -21.97361 -20.53808 -19.85978 -18.92187 -18.66613 -17.52335 -17.19880 -16.97692 -16.91260 -16.63426 -16.41837 -15.98922 -15.83178 -15.79430 -15.28318 -15.03044 -14.98219 -14.87075 -14.62965 -14.19717 -13.88594 -13.52941 -13.41259 -13.35463 -13.20495 -13.07312 -13.03185 -12.89806 -12.82643 -12.64905 -12.55772 -12.45121 -12.32160 -12.21647 -11.99534 -11.94582 -11.89479 -11.74227 -11.43337 -11.29084 -10.79974 -10.76598 -10.66276 -10.54592 -9.54421 -8.64639 -7.86829 -5.35298 1.43019 1.44010 1.45294 1.55960 1.70611 2.49150 2.70386 2.78238 3.27678 3.40857 3.58163 3.68598 3.74938 3.81853 3.87352 3.92094 3.97338 4.10445 4.18976 4.26382 4.40892 4.43964 4.45462 4.48248 4.49638 4.60103 4.60633 4.63391 4.67606 4.69775 4.73319 4.81089 4.85275 4.85790 4.90630 4.94400 4.96944 5.05240 5.12304 5.15268 5.21602 5.30744 5.34920 5.37305 5.48439 5.63019 5.73184 6.11218 6.24950 6.35973 6.40755 6.98724 7.15001 7.85996 8.39004 9.19010 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003097 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.626965 B = 9040.273322 C = 9554.924437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.085 3.915 4 C -0.102 4.102 5 H 0.126 0.874 6 C -0.136 4.136 7 C 0.521 3.479 8 O -0.580 6.580 9 N -0.608 5.608 10 C 0.080 3.920 11 C 0.062 3.938 12 H 0.044 0.956 13 C -0.135 4.135 14 O -0.371 6.371 15 C 0.125 3.875 16 C -0.143 4.143 17 C 0.196 3.804 18 N -0.610 5.610 19 C -0.259 4.259 20 H 0.067 0.933 21 C -0.054 4.054 22 N -0.936 5.936 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.290 1.290 27 C 0.149 3.851 28 C -0.110 4.110 29 C 0.096 3.904 30 H 0.105 0.895 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.054 0.946 45 H -0.003 1.003 46 H 0.048 0.952 47 H 0.249 0.751 48 H 0.017 0.983 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.094 0.906 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.856 -11.446 -12.620 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C 0.007 3.993 4 C -0.123 4.123 5 H 0.144 0.856 6 C -0.193 4.193 7 C 0.310 3.690 8 O -0.459 6.459 9 N -0.340 5.340 10 C -0.041 4.041 11 C 0.004 3.996 12 H 0.062 0.938 13 C -0.192 4.192 14 O -0.291 6.291 15 C 0.084 3.916 16 C -0.183 4.183 17 C 0.070 3.930 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.085 0.915 21 C -0.249 4.249 22 N -0.583 5.583 23 Si 0.796 3.204 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.024 3.976 28 C -0.149 4.149 29 C -0.027 4.027 30 H 0.123 0.877 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.015 0.985 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.090 0.910 52 H 0.112 0.888 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.825 -11.137 -12.393 23.679 hybrid contribution 0.261 0.936 1.420 1.721 sum -16.563 -10.201 -10.973 22.334 Atomic orbital electron populations 1.22947 0.79289 1.04131 1.00690 1.87776 1.21454 1.27144 1.95579 1.22127 0.91512 0.84708 1.00922 1.21202 0.95076 0.92884 1.03105 0.85619 1.21698 1.01491 1.02062 0.94076 1.20927 0.80615 0.91407 0.76011 1.90681 1.62921 1.43110 1.49219 1.48197 1.18744 1.07947 1.59160 1.22769 0.90861 0.88647 1.01871 1.22610 0.93529 0.84880 0.98612 0.93801 1.21700 0.98863 0.96553 1.02108 1.88012 1.55043 1.13511 1.72516 1.21559 0.90304 0.88132 0.91578 1.22453 0.99055 1.00140 0.96611 1.20319 0.87819 0.87502 0.97387 1.44292 1.60441 1.27063 1.01560 1.19580 1.29118 0.90364 0.99898 0.91498 1.25869 0.99548 0.97240 1.02210 1.70165 1.49970 1.12850 1.25290 0.85191 0.77119 0.79072 0.79004 1.19016 1.21890 1.21711 1.20900 0.94531 0.98260 0.83907 1.21888 0.97254 0.94125 1.01617 1.22260 0.93440 0.84987 1.01963 0.87691 0.93743 0.93265 0.93356 0.92911 0.91907 0.93406 0.88877 0.88123 0.86181 0.90430 0.93524 0.88149 0.93531 0.92786 0.98454 0.93369 0.94231 0.96535 0.92621 0.88929 0.90951 0.88792 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.27 10.33 -148.98 -1.54 -8.81 16 3 C 0.08 1.69 4.82 71.98 0.35 2.03 16 4 C -0.10 -1.98 2.11 -11.54 -0.02 -2.01 16 5 H 0.13 1.80 6.58 -2.39 -0.02 1.78 16 6 C -0.14 -2.58 8.79 71.98 0.63 -1.95 16 7 C 0.52 13.89 6.77 87.66 0.59 14.48 16 8 O -0.58 -20.12 15.73 -3.02 -0.05 -20.16 16 9 N -0.61 -15.22 2.52 -817.40 -2.06 -17.28 16 10 C 0.08 1.52 5.60 86.35 0.48 2.01 16 11 C 0.06 1.60 3.01 30.69 0.09 1.69 16 12 H 0.04 1.35 6.29 -2.39 -0.02 1.34 16 13 C -0.13 -2.72 9.57 71.98 0.69 -2.03 16 14 O -0.37 -12.18 8.65 -148.98 -1.29 -13.47 16 15 C 0.12 4.18 0.68 -10.71 -0.01 4.18 16 16 C -0.14 -5.86 4.33 30.65 0.13 -5.72 16 17 C 0.20 9.93 5.05 86.36 0.44 10.37 16 18 N -0.61 -31.85 2.99 -699.08 -2.09 -33.94 16 19 C -0.26 -14.70 9.60 84.03 0.81 -13.89 16 20 H 0.07 3.68 7.86 -2.91 -0.02 3.66 16 21 C -0.05 -3.09 5.02 84.86 0.43 -2.66 16 22 N -0.94 -56.84 11.00 21.65 0.24 -56.60 16 23 Si 0.97 46.16 29.57 68.60 2.03 48.19 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 C 0.15 6.41 6.28 86.36 0.54 6.95 16 28 C -0.11 -3.73 5.10 30.66 0.16 -3.58 16 29 C 0.10 2.73 5.31 86.34 0.46 3.19 16 30 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 33 H 0.05 1.10 8.02 -2.39 -0.02 1.08 16 34 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.06 1.18 7.61 -2.39 -0.02 1.17 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.47 7.96 -2.39 -0.02 1.45 16 38 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.12 1.62 5.19 -2.39 -0.01 1.60 16 40 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 44 H 0.05 2.11 6.16 -2.39 -0.01 2.09 16 45 H 0.00 -0.14 7.82 -2.39 -0.02 -0.16 16 46 H 0.05 2.81 5.99 -2.39 -0.01 2.79 16 47 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 48 H 0.02 0.75 7.82 -2.38 -0.02 0.73 16 49 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 50 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 51 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 52 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 53 H 0.08 2.63 7.06 -2.39 -0.02 2.61 16 Total: -1.00 -73.35 401.60 3.12 -70.23 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.87 Total: 17.23 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 7.01 Total: 14.62 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -3.92 Total: -107.82 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -2.87 Total: -42.44 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.35 3.12 -70.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111540912.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.474 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds