Wall clock time and date at job start Wed Apr 1 2020 00:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99896 * 2 1 4 4 C 1.53009 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47180 * 305.00174 * 4 3 2 6 6 C 1.52999 * 109.46896 * 65.00314 * 4 3 2 7 7 C 1.50700 * 109.47267 * 184.99993 * 4 3 2 8 8 O 1.21283 * 119.99636 * 346.59841 * 7 4 3 9 9 N 1.34766 * 120.00419 * 166.59491 * 7 4 3 10 10 C 1.47158 * 120.98502 * 356.28492 * 9 7 4 11 11 C 1.53297 * 108.37374 * 230.61613 * 10 9 7 12 12 H 1.08995 * 109.51386 * 67.57345 * 11 10 9 13 13 C 1.53001 * 109.51165 * 187.67359 * 11 10 9 14 14 O 1.42971 * 109.22446 * 307.64535 * 11 10 9 15 15 C 1.42897 * 114.20684 * 62.49794 * 14 11 10 16 16 C 1.52988 * 109.56088 * 57.47308 * 15 14 11 17 17 C 1.53192 * 109.34731 * 59.04247 * 16 15 14 18 18 N 1.46926 * 108.77951 * 54.57085 * 17 16 15 19 19 C 1.36936 * 120.64332 * 126.30928 * 18 17 16 20 20 H 1.07999 * 119.99779 * 332.25541 * 19 18 17 21 21 C 1.38813 * 119.99949 * 152.25179 * 19 18 17 22 22 N 1.31624 * 119.99595 * 166.64992 * 21 19 18 23 23 Si 1.86797 * 120.00116 * 346.65213 * 21 19 18 24 24 H 1.48501 * 109.47334 * 94.80607 * 23 21 19 25 25 H 1.48500 * 109.46905 * 214.80272 * 23 21 19 26 26 H 1.48500 * 109.47180 * 334.80199 * 23 21 19 27 27 C 1.46931 * 118.71681 * 306.32856 * 18 17 16 28 28 C 1.52999 * 109.54703 * 177.77561 * 15 14 11 29 29 C 1.47154 * 120.99392 * 176.30601 * 9 7 4 30 30 H 1.09004 * 109.46965 * 60.00109 * 1 2 3 31 31 H 1.09003 * 109.47175 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47060 * 300.00060 * 1 2 3 33 33 H 1.08998 * 109.47230 * 60.00596 * 3 2 1 34 34 H 1.08996 * 109.47278 * 299.99490 * 3 2 1 35 35 H 1.09002 * 109.47331 * 184.82304 * 6 4 3 36 36 H 1.09008 * 109.47255 * 304.81983 * 6 4 3 37 37 H 1.08996 * 109.47580 * 64.82287 * 6 4 3 38 38 H 1.09002 * 109.68647 * 350.33733 * 10 9 7 39 39 H 1.09006 * 109.68339 * 110.89422 * 10 9 7 40 40 H 1.08998 * 109.46951 * 59.99643 * 13 11 10 41 41 H 1.08993 * 109.47290 * 179.97438 * 13 11 10 42 42 H 1.09001 * 109.47365 * 299.99965 * 13 11 10 43 43 H 1.09001 * 109.48453 * 179.00234 * 16 15 14 44 44 H 1.08994 * 109.48928 * 299.07323 * 16 15 14 45 45 H 1.09005 * 109.58206 * 294.78124 * 17 16 15 46 46 H 1.08997 * 109.58328 * 174.36197 * 17 16 15 47 47 H 0.97000 * 119.99445 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58787 * 293.88823 * 27 18 17 49 49 H 1.08999 * 109.58440 * 173.45823 * 27 18 17 50 50 H 1.08995 * 109.49335 * 60.91415 * 28 15 14 51 51 H 1.08997 * 109.48709 * 180.96893 * 28 15 14 52 52 H 1.09004 * 109.67290 * 9.77502 * 29 9 7 53 53 H 1.08997 * 109.67827 * 249.24247 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8508 0.5685 0.8426 6 6 3.9962 0.5365 -1.3064 7 6 4.1480 2.5560 0.1245 8 8 3.4627 3.5432 -0.0390 9 7 5.4572 2.6854 0.4169 10 6 6.2905 1.5059 0.6994 11 6 7.0440 1.7497 2.0120 12 1 6.3357 1.7685 2.8402 13 6 8.0601 0.6276 2.2339 14 8 7.7253 3.0044 1.9377 15 6 6.8611 4.1323 1.7858 16 6 5.8660 4.1751 2.9471 17 6 6.6333 4.2687 4.2697 18 7 7.5413 5.4222 4.2093 19 6 7.5128 6.3846 5.1829 20 1 6.5996 6.5754 5.7271 21 6 8.6577 7.1150 5.4706 22 7 8.5762 8.2040 6.2054 23 14 10.3138 6.5525 4.8148 24 1 10.6073 7.2575 3.5412 25 1 11.3718 6.8651 5.8088 26 1 10.2789 5.0877 4.5731 27 6 8.4802 5.5234 3.0836 28 6 7.6928 5.4164 1.7738 29 6 6.0958 4.0103 0.4638 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 5.0732 0.3721 -1.2706 36 1 3.4871 -0.4184 -1.4377 37 1 3.7567 1.1938 -2.1422 38 1 5.6575 0.6240 0.7977 39 1 7.0039 1.3577 -0.1114 40 1 8.7691 0.6105 1.4062 41 1 8.5957 0.8018 3.1670 42 1 7.5398 -0.3288 2.2863 43 1 5.2191 5.0458 2.8395 44 1 5.2608 3.2688 2.9409 45 1 7.2106 3.3568 4.4224 46 1 5.9297 4.4001 5.0917 47 1 9.3762 8.7141 6.4067 48 1 9.2072 4.7132 3.1402 49 1 8.9955 6.4831 3.1228 50 1 8.3865 5.3926 0.9334 51 1 7.0314 6.2771 1.6752 52 1 5.3333 4.7874 0.4081 53 1 6.7877 4.1140 -0.3720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111540913.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:51 Heat of formation + Delta-G solvation = -114.385940 kcal Electronic energy + Delta-G solvation = -32621.399966 eV Core-core repulsion = 28493.477561 eV Total energy + Delta-G solvation = -4127.922405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.07421 -40.47249 -38.79142 -38.20307 -35.93700 -35.23419 -34.50934 -33.50852 -32.10101 -31.52469 -28.99706 -28.23917 -27.39097 -26.70119 -25.90788 -24.84776 -23.66494 -22.98556 -22.22152 -20.58013 -19.98377 -18.97099 -18.66488 -17.65493 -17.32178 -17.12700 -17.07412 -16.68912 -16.34249 -16.09268 -15.98757 -15.84512 -15.48885 -15.31999 -14.94780 -14.85683 -14.54818 -14.25395 -14.09701 -13.76535 -13.59079 -13.52139 -13.36892 -13.29137 -13.11372 -12.94471 -12.87246 -12.62462 -12.58856 -12.43450 -12.31862 -12.28719 -12.04637 -11.89126 -11.74383 -11.53222 -11.48755 -11.32980 -10.94291 -10.80168 -10.68766 -10.64938 -9.56802 -8.92541 -8.15833 -5.52633 1.29432 1.41574 1.45679 1.50916 1.69374 2.40729 2.63650 2.76471 3.10380 3.25659 3.40492 3.58181 3.69452 3.74777 3.80716 3.87753 3.93109 4.06895 4.19428 4.23889 4.25526 4.39391 4.44534 4.45533 4.48413 4.49570 4.58167 4.60038 4.61554 4.62595 4.65909 4.74644 4.77680 4.84511 4.88093 4.88507 4.88745 4.93692 4.96872 5.02300 5.10881 5.15397 5.24613 5.27718 5.37303 5.40491 5.84118 6.10489 6.11196 6.24859 6.32493 6.89416 6.99375 7.60032 8.01089 9.04095 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019309 B = 0.003067 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.722142 B = 9127.298786 C = 9648.541765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.083 3.917 4 C -0.103 4.103 5 H 0.122 0.878 6 C -0.134 4.134 7 C 0.521 3.479 8 O -0.581 6.581 9 N -0.606 5.606 10 C 0.078 3.922 11 C 0.059 3.941 12 H 0.058 0.942 13 C -0.137 4.137 14 O -0.373 6.373 15 C 0.127 3.873 16 C -0.142 4.142 17 C 0.158 3.842 18 N -0.620 5.620 19 C -0.247 4.247 20 H 0.049 0.951 21 C -0.041 4.041 22 N -0.965 5.965 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.315 1.315 26 H -0.250 1.250 27 C 0.128 3.872 28 C -0.116 4.116 29 C 0.097 3.903 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.050 0.950 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.102 0.898 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.047 0.953 47 H 0.261 0.739 48 H 0.043 0.957 49 H 0.046 0.954 50 H 0.091 0.909 51 H 0.071 0.929 52 H 0.082 0.918 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -23.386 -18.043 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.005 3.995 4 C -0.123 4.123 5 H 0.139 0.861 6 C -0.191 4.191 7 C 0.311 3.689 8 O -0.461 6.461 9 N -0.338 5.338 10 C -0.043 4.043 11 C 0.001 3.999 12 H 0.076 0.924 13 C -0.194 4.194 14 O -0.293 6.293 15 C 0.087 3.913 16 C -0.181 4.181 17 C 0.033 3.967 18 N -0.345 5.345 19 C -0.377 4.377 20 H 0.066 0.934 21 C -0.235 4.235 22 N -0.612 5.612 23 Si 0.788 3.212 24 H -0.205 1.205 25 H -0.245 1.245 26 H -0.174 1.174 27 C 0.004 3.996 28 C -0.155 4.155 29 C -0.026 4.026 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.141 0.859 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.120 0.880 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.064 0.936 50 H 0.109 0.891 51 H 0.090 0.910 52 H 0.101 0.899 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.552 -22.927 -18.053 30.409 hybrid contribution 0.158 1.133 0.457 1.232 sum -8.394 -21.795 -17.596 29.242 Atomic orbital electron populations 1.22936 0.79393 1.04109 1.00599 1.87759 1.21348 1.27215 1.95567 1.22117 0.92123 0.84493 1.00735 1.21181 0.94588 0.92948 1.03633 0.86054 1.21728 1.02764 1.01352 0.93266 1.20920 0.81259 0.91618 0.75117 1.90701 1.61384 1.41748 1.52283 1.48143 1.08853 1.08047 1.68777 1.22835 0.95243 0.88015 0.98230 1.22729 0.95724 0.84992 0.96487 0.92406 1.21722 0.98667 0.96241 1.02785 1.88016 1.33429 1.13952 1.93857 1.21451 0.89908 0.87063 0.92899 1.22354 0.97899 1.01497 0.96336 1.20857 0.91695 0.88834 0.95359 1.44421 1.42866 1.23621 1.23546 1.18874 0.95149 1.10944 1.12684 0.93358 1.25980 1.01417 0.97390 0.98729 1.69921 1.29673 1.17599 1.44022 0.85808 0.79435 0.79968 0.76027 1.20453 1.24474 1.17405 1.21351 0.92539 0.98498 0.87223 1.21927 0.99653 0.95280 0.98678 1.22200 0.97242 0.85613 0.97577 0.93461 0.87616 0.93825 0.93911 0.93059 0.90070 0.89547 0.93117 0.85869 0.88438 0.90978 0.92925 0.87979 0.92858 0.90830 0.94634 0.93405 0.92983 0.93951 0.93563 0.89052 0.91009 0.89944 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.81 10.16 -148.98 -1.51 -8.33 16 3 C 0.08 1.56 4.63 71.99 0.33 1.89 16 4 C -0.10 -1.67 2.11 -11.54 -0.02 -1.69 16 5 H 0.12 1.53 6.74 -2.39 -0.02 1.51 16 6 C -0.13 -1.60 8.91 71.98 0.64 -0.95 16 7 C 0.52 12.11 6.93 87.66 0.61 12.72 16 8 O -0.58 -18.53 15.54 -3.04 -0.05 -18.58 16 9 N -0.61 -12.79 2.52 -817.42 -2.06 -14.85 16 10 C 0.08 1.13 4.78 86.35 0.41 1.54 16 11 C 0.06 1.15 3.01 30.69 0.09 1.24 16 12 H 0.06 1.25 6.29 -2.39 -0.02 1.24 16 13 C -0.14 -1.99 9.57 71.98 0.69 -1.30 16 14 O -0.37 -10.36 8.64 -148.98 -1.29 -11.65 16 15 C 0.13 3.79 0.68 -10.71 -0.01 3.78 16 16 C -0.14 -4.75 4.33 30.65 0.13 -4.62 16 17 C 0.16 6.37 6.28 86.36 0.54 6.91 16 18 N -0.62 -30.11 2.81 -699.07 -1.96 -32.07 16 19 C -0.25 -14.50 10.10 84.03 0.85 -13.65 16 20 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 21 C -0.04 -2.49 5.37 84.86 0.46 -2.03 16 22 N -0.97 -62.44 13.97 21.65 0.30 -62.14 16 23 Si 0.96 47.97 24.27 68.60 1.67 49.64 16 24 H -0.28 -13.15 6.77 99.48 0.67 -12.48 16 25 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 26 H -0.25 -11.84 5.79 99.48 0.58 -11.26 16 27 C 0.13 5.55 3.87 86.36 0.33 5.89 16 28 C -0.12 -3.95 5.10 30.66 0.16 -3.80 16 29 C 0.10 2.47 5.30 86.34 0.46 2.93 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 0.91 8.13 -2.39 -0.02 0.89 16 34 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.08 0.68 6.73 -2.39 -0.02 0.66 16 36 H 0.09 0.92 7.70 -2.38 -0.02 0.91 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.12 1.06 5.29 -2.39 -0.01 1.05 16 39 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 2.18 6.15 -2.39 -0.01 2.17 16 45 H 0.04 1.38 7.83 -2.38 -0.02 1.36 16 46 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 47 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 48 H 0.04 1.83 6.34 -2.39 -0.02 1.82 16 49 H 0.05 2.20 4.09 -2.39 -0.01 2.19 16 50 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 51 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 52 H 0.08 2.45 7.06 -2.38 -0.02 2.43 16 53 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -76.34 392.01 2.73 -73.60 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.72 Total: 13.96 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.92 Total: 10.41 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -3.72 Total: -109.06 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -2.85 Total: -38.55 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.67 Total: 49.64 kcal Total: -76.34 2.73 -73.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111540913.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.783 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds