Wall clock time and date at job start Tue Mar 31 2020 23:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53080 * 1 3 3 H 1.10925 * 106.78664 * 2 1 4 4 C 1.52560 * 109.98412 * 244.05872 * 2 1 3 5 5 C 1.52966 * 110.17056 * 281.77009 * 4 2 1 6 6 H 1.08762 * 110.26169 * 61.94936 * 5 4 2 7 7 C 1.53247 * 109.32528 * 181.91599 * 5 4 2 8 8 C 1.52997 * 109.47364 * 293.66439 * 7 5 4 9 9 N 1.46501 * 109.47646 * 179.97438 * 8 7 5 10 10 C 1.34772 * 120.00104 * 180.02562 * 9 8 7 11 11 O 1.21345 * 120.00562 * 0.02562 * 10 9 8 12 12 C 1.49454 * 119.99572 * 180.02562 * 10 9 8 13 13 O 1.21352 * 120.00190 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99986 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00459 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47202 * 180.02562 * 15 14 12 17 17 C 1.53007 * 109.46976 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46985 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00103 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99646 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99954 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99798 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47275 * 90.00062 * 22 20 18 24 24 H 1.48498 * 109.47011 * 210.00308 * 22 20 18 25 25 H 1.48506 * 109.47083 * 330.00029 * 22 20 18 26 26 C 1.52974 * 108.52071 * 301.08037 * 5 4 2 27 27 C 1.52571 * 110.11996 * 59.05835 * 26 5 4 28 28 H 1.10922 * 107.15533 * 193.68368 * 27 26 5 29 29 C 1.53075 * 109.99218 * 77.94463 * 27 26 5 30 30 O 1.40754 * 113.08777 * 312.45417 * 27 26 5 31 31 H 1.09001 * 109.47301 * 175.94162 * 1 2 3 32 32 H 1.08997 * 109.47515 * 295.94087 * 1 2 3 33 33 H 1.09002 * 109.47165 * 55.94578 * 1 2 3 34 34 H 1.09234 * 109.57211 * 161.41557 * 4 2 1 35 35 H 1.09237 * 109.55964 * 42.10495 * 4 2 1 36 36 H 1.09001 * 109.47002 * 53.66335 * 7 5 4 37 37 H 1.08999 * 109.47232 * 173.66231 * 7 5 4 38 38 H 1.08998 * 109.47659 * 300.00184 * 8 7 5 39 39 H 1.09007 * 109.47035 * 59.99981 * 8 7 5 40 40 H 0.96999 * 119.99373 * 0.02562 * 9 8 7 41 41 H 0.97005 * 119.99651 * 359.97438 * 14 12 10 42 42 H 1.09005 * 109.46574 * 300.00148 * 15 14 12 43 43 H 1.08999 * 109.47188 * 59.99491 * 15 14 12 44 44 H 1.09001 * 109.46857 * 299.99519 * 16 15 14 45 45 H 1.08999 * 109.47621 * 59.99564 * 16 15 14 46 46 H 1.08998 * 109.47022 * 300.00362 * 17 16 15 47 47 H 1.09007 * 109.46922 * 59.99700 * 17 16 15 48 48 H 0.97004 * 119.99585 * 179.97438 * 21 20 18 49 49 H 1.09228 * 109.35528 * 298.60086 * 26 5 4 50 50 H 1.09234 * 109.35236 * 179.50520 * 26 5 4 51 51 H 1.08999 * 109.47535 * 55.96724 * 29 27 26 52 52 H 1.09000 * 109.46683 * 175.96326 * 29 27 26 53 53 H 1.08998 * 109.46881 * 295.96101 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8512 1.0620 0.0000 4 6 2.0522 -0.6272 -1.2893 5 6 1.9572 -2.1518 -1.2101 6 1 0.9197 -2.4594 -1.1008 7 6 2.5294 -2.7629 -2.4937 8 6 1.6360 -2.3900 -3.6785 9 7 2.1833 -2.9736 -4.9057 10 6 1.5582 -2.7754 -6.0831 11 8 0.5424 -2.1132 -6.1270 12 6 2.1163 -3.3714 -7.3350 13 8 3.1325 -4.0333 -7.2913 14 7 1.4916 -3.1728 -8.5125 15 6 2.0389 -3.7565 -9.7398 16 6 1.1465 -3.3819 -10.9247 17 6 1.7185 -3.9909 -12.2065 18 6 0.8392 -3.6225 -13.3736 19 1 -0.0395 -3.0144 -13.2169 20 6 1.1570 -4.0609 -14.6416 21 7 2.2273 -4.8010 -14.8324 22 14 0.0675 -3.6036 -16.0884 23 1 0.5408 -2.3266 -16.6804 24 1 0.1288 -4.6769 -17.1128 25 1 -1.3334 -3.4438 -15.6220 26 6 2.7802 -2.6284 -0.0120 27 6 2.2529 -1.9954 1.2721 28 1 3.0170 -2.1647 2.0581 29 6 0.9821 -2.7170 1.7277 30 8 2.0480 -0.6074 1.1596 31 1 -0.3634 -1.0251 -0.0727 32 1 -0.3634 0.4495 0.9241 33 1 -0.3633 0.5755 -0.8514 34 1 3.0941 -0.3368 -1.4422 35 1 1.4595 -0.2711 -2.1350 36 1 3.5353 -2.3785 -2.6621 37 1 2.5669 -3.8477 -2.3944 38 1 0.6300 -2.7743 -3.5102 39 1 1.5985 -1.3051 -3.7779 40 1 2.9955 -3.5027 -4.8707 41 1 0.6795 -2.6434 -8.5475 42 1 3.0451 -3.3723 -9.9074 43 1 2.0760 -4.8413 -9.6410 44 1 0.1402 -3.7657 -10.7573 45 1 1.1098 -2.2970 -11.0233 46 1 2.7248 -3.6068 -12.3737 47 1 1.7555 -5.0759 -12.1081 48 1 2.4507 -5.1097 -15.7245 49 1 3.8258 -2.3471 -0.1561 50 1 2.7146 -3.7163 0.0626 51 1 1.1896 -3.7808 1.8429 52 1 0.6531 -2.3057 2.6821 53 1 0.1986 -2.5782 0.9828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117306243.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:52 Heat of formation + Delta-G solvation = -178.612095 kcal Electronic energy + Delta-G solvation = -28849.726254 eV Core-core repulsion = 24719.018793 eV Total energy + Delta-G solvation = -4130.707460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.74650 -40.89410 -39.69814 -37.44181 -37.01914 -35.42365 -34.95962 -34.33114 -33.04397 -31.66776 -29.71205 -28.87434 -27.25818 -26.46649 -25.02271 -23.87171 -23.49476 -22.39763 -22.35940 -21.24889 -19.51033 -19.44112 -18.51329 -18.01796 -17.34487 -17.31796 -16.94362 -16.62331 -16.45021 -16.34249 -16.18808 -15.82337 -15.77111 -15.27960 -15.01560 -14.86997 -14.53711 -14.27273 -13.84073 -13.78219 -13.65015 -13.51188 -13.26200 -13.22855 -13.11051 -12.93960 -12.83655 -12.76002 -12.54868 -12.40432 -12.39984 -12.11587 -11.80470 -11.70227 -11.66689 -11.56126 -11.23949 -11.19127 -10.86528 -10.65003 -10.54609 -10.35792 -10.30621 -10.26477 -8.19409 -6.30302 0.29444 1.27900 1.42475 1.43104 1.54242 2.09368 2.41737 2.60577 2.76773 3.14645 3.39621 3.60540 3.70431 3.81567 3.88055 4.05554 4.07928 4.10948 4.17824 4.24583 4.33978 4.45569 4.50297 4.52211 4.57470 4.61189 4.66045 4.68556 4.86184 4.91126 4.91312 4.92726 4.96939 5.01772 5.02057 5.05065 5.14587 5.17133 5.22550 5.23076 5.25636 5.29477 5.40428 5.49670 5.51581 5.70689 5.84432 5.87916 6.22945 6.31893 6.69256 6.86562 6.87280 6.89843 7.39147 8.92400 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033687 B = 0.001358 C = 0.001327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.986698 B =20615.754235 C =21096.744737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.080 4.080 6 H 0.078 0.922 7 C -0.118 4.118 8 C 0.114 3.886 9 N -0.688 5.688 10 C 0.513 3.487 11 O -0.541 6.541 12 C 0.500 3.500 13 O -0.548 6.548 14 N -0.687 5.687 15 C 0.127 3.873 16 C -0.106 4.106 17 C 0.024 3.976 18 C -0.543 4.543 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.263 1.263 26 C -0.142 4.142 27 C 0.095 3.905 28 H 0.094 0.906 29 C -0.178 4.178 30 O -0.399 6.399 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.420 0.580 41 H 0.419 0.581 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.067 0.933 46 H -0.003 1.003 47 H -0.003 1.003 48 H 0.263 0.737 49 H 0.072 0.928 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.054 0.946 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.634 6.682 36.340 36.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.187 4.187 5 C -0.099 4.099 6 H 0.096 0.904 7 C -0.156 4.156 8 C -0.008 4.008 9 N -0.341 5.341 10 C 0.293 3.707 11 O -0.419 6.419 12 C 0.281 3.719 13 O -0.426 6.426 14 N -0.339 5.339 15 C 0.004 3.996 16 C -0.144 4.144 17 C -0.013 4.013 18 C -0.581 4.581 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.789 3.211 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.187 1.187 26 C -0.180 4.180 27 C 0.038 3.962 28 H 0.112 0.888 29 C -0.236 4.236 30 O -0.319 6.319 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.258 0.742 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.107 0.893 51 H 0.095 0.905 52 H 0.074 0.926 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.498 6.702 36.360 36.976 hybrid contribution -0.397 -0.184 -1.357 1.426 sum -0.896 6.518 35.003 35.616 Atomic orbital electron populations 1.22480 0.96225 1.02397 1.02486 1.21867 0.93123 0.96446 0.84529 0.89157 1.22260 1.02662 0.95742 0.97999 1.20926 1.00356 0.94746 0.93826 0.90357 1.21854 0.99327 1.02395 0.92002 1.21704 0.98207 0.98918 0.81986 1.45784 1.29408 1.52770 1.06138 1.19928 0.84321 0.81271 0.85179 1.90760 1.24610 1.39749 1.86760 1.20373 0.84469 0.81566 0.85480 1.90750 1.24828 1.40187 1.86882 1.45894 1.29355 1.52281 1.06378 1.21479 0.97774 0.98182 0.82170 1.21645 0.98686 1.01174 0.92916 1.18939 0.95377 0.94996 0.92014 1.21685 1.10712 1.32428 0.93323 0.91790 1.25966 0.96683 0.94941 1.02218 1.70099 1.27305 1.36854 1.23005 0.85451 0.79320 0.77878 0.78407 1.19870 1.20938 1.18672 1.22155 1.00100 1.01932 0.93782 1.21922 0.96964 0.80012 0.97300 0.88828 1.22481 0.98434 1.01157 1.01517 1.86381 1.83873 1.22488 1.39109 0.92552 0.92502 0.90926 0.90961 0.90099 0.90120 0.89691 0.91077 0.90811 0.74244 0.74352 0.91713 0.91700 0.91471 0.91461 0.98503 0.98494 0.92804 0.90916 0.89320 0.90454 0.92649 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.34 72.01 0.67 -1.17 16 2 C 0.10 1.08 3.43 30.48 0.10 1.18 16 3 H 0.09 0.96 8.28 -1.35 -0.01 0.95 16 4 C -0.15 -1.34 4.52 30.44 0.14 -1.20 16 5 C -0.08 -0.61 2.10 -10.73 -0.02 -0.63 16 6 H 0.08 0.65 6.65 -2.51 -0.02 0.64 16 7 C -0.12 -0.88 4.78 30.68 0.15 -0.73 16 8 C 0.11 1.42 5.45 86.38 0.47 1.90 16 9 N -0.69 -11.72 5.55 -464.41 -2.58 -14.30 16 10 C 0.51 12.37 7.89 87.27 0.69 13.06 16 11 O -0.54 -15.13 16.48 -3.23 -0.05 -15.18 16 12 C 0.50 14.19 7.89 87.27 0.69 14.88 16 13 O -0.55 -17.82 16.48 -3.25 -0.05 -17.87 16 14 N -0.69 -19.72 5.55 -464.40 -2.58 -22.29 16 15 C 0.13 4.28 5.67 86.38 0.49 4.77 16 16 C -0.11 -4.05 5.27 30.60 0.16 -3.89 16 17 C 0.02 1.25 4.97 29.85 0.15 1.39 16 18 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 20 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 21 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 22 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 26 C -0.14 -1.01 4.77 30.44 0.15 -0.87 16 27 C 0.10 0.93 3.43 30.48 0.10 1.03 16 28 H 0.09 0.81 8.28 -1.35 -0.01 0.80 16 29 C -0.18 -1.54 9.37 72.01 0.67 -0.87 16 30 O -0.40 -5.52 9.72 -143.60 -1.40 -6.92 16 31 H 0.06 0.58 5.70 -2.39 -0.01 0.57 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.66 8.16 -2.26 -0.02 0.64 16 35 H 0.08 0.71 6.56 -2.26 -0.01 0.70 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.98 6.63 -2.38 -0.02 0.97 16 40 H 0.42 6.17 7.94 -92.71 -0.74 5.43 16 41 H 0.42 10.79 7.94 -92.70 -0.74 10.06 16 42 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 47 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 48 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 49 H 0.07 0.53 8.16 -2.27 -0.02 0.51 16 50 H 0.09 0.44 8.01 -2.26 -0.02 0.42 16 51 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 52 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 53 H 0.05 0.51 5.76 -2.39 -0.01 0.50 16 Total: -1.00 -68.85 421.30 0.41 -68.44 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.55 Total: 19.01 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.31 Total: -0.64 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -4.87 Total: -92.53 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.50 Total: -39.97 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -68.85 0.41 -68.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306243.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.176 kcal (2) G-P(sol) polarization free energy of solvation -68.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds